ENSG00000101868:+:X:24809897:24815111

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000101868:+:X:24809897:24815111 ENSG00000101868 ENST00000611764 + X 24809898 24815111 465 AUUUUGAUGCAUACGAAAGAGAUGGUACAAAAGAUGAAUCUUGAAGUUAUUUAUGGAGAUACAGAUUCAAUUAUGAUAAACACCAAUAGCACCAAUCUGGAAGAAGUAUUUAAGUUGGGAAACAAGGUAAAAAGUGAAGUGAAUAAGUUGUACAAACUGCUUGAAAUAGACAUUGAUGGGGUUUUCAAGUCUCUGCUACUGCUGAAAAAAAAGAAGUACGCUGCUCUGGUUGUUGAGCCAACGUCGGAUGGGAAUUAUGUCACCAAACAGGAGCUCAAAGGAUUAGAUAUAGUUAGAAGAGAUUGGUGUGAUCUUGCUAAAGACACUGGAAACUUUGUGAUUGGCCAGAUUCUUUCUGAUCAAAGCCGGGACACUAUAGUGGAAAACAUUCAGAAGAGGCUGAUAGAAAUUGGAGAAAAUGUGCUAAAUGGCAGUGUCCCAGUGAGCCAGUUUGAAAUUAACAAGAUUUUGAUGCAUACGAAAGAGAUGGUACAAAAGAUGAAUCUUGAAGUUAU circ
ENSG00000101868:+:X:24809897:24815111 ENSG00000101868 ENST00000611764 + X 24809898 24815111 22 AAAUUAACAAGAUUUUGAUGCA bsj
ENSG00000101868:+:X:24809897:24815111 ENSG00000101868 ENST00000611764 + X 24809698 24809907 210 CUCUGGCUCAGAAUCAGCAUAGAGGCAAACUUAGAUUAUAUUGAUGUUACUGUUAUUUUAAGGGCUGUUGUUAGAAAACCUUCAAGAGCUUUAGAAAUACAUGGAAAUGGCAAAUCAUUGAAAGUUACCUAUCUCUAUGUGCUUCUAUUUAUGUCUUUAUAAUUGUGUAACUUAUUAAUCUUGACUUUUGUUUCAUUUAGAUUUUGAUGC ie_up
ENSG00000101868:+:X:24809897:24815111 ENSG00000101868 ENST00000611764 + X 24815102 24815311 210 AAUUAACAAGGUAAAUGUAGCAUUUAUUGCUGAGCCCAGCUGCUGUCAUGUGUUUUUCACCUCCUUCAGAUAGUUGAAGAACCACCUCAUCCUUGCAAUUGAAAUAAAUUCUAGCUGGUGAUGAAAGCUGCUUAACAACUAUCUCACAGAUUGAGUAUUAGCAUACCUCUUCCAGCCACAGGUACUGCCAUGUCUGCCACAGAGACCUUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 2 497 0.006451613 0.0007217036 3.160182 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
MATR3 3 739 0.008602151 0.0010724109 3.003840 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGHMBP2 3 813 0.008602151 0.0011796520 2.866336 AAAAAA AAAAAA
PABPC4 5 1251 0.012903226 0.0018144033 2.830165 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPA0 1 453 0.004301075 0.0006579386 2.708673 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.006451613 0.0009985015 2.691823 AAGAAG AAGAAG
PABPN1 4 1222 0.010752688 0.0017723764 2.600940 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMY1A1 1 489 0.004301075 0.0007101099 2.598583 ACAAGA ACAAGA,CAAGAC
ZFP36L2 4 1277 0.010752688 0.0018520827 2.537477 AUUUAU,UAUUUA,UUAUUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SNRNP70 3 1237 0.008602151 0.0017941145 2.261425 AUUCAA,GAUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPD 8 2837 0.019354839 0.0041128408 2.234487 AAAAAA,AGAUAU,AUUUAU,UAUUUA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ERI1 1 632 0.004301075 0.0009173461 2.229159 UUCAGA UUCAGA,UUUCAG
ZCRB1 4 1605 0.010752688 0.0023274215 2.207893 AAUUAA,AUUUAA,GAAUUA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TUT1 1 678 0.004301075 0.0009840095 2.127953 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
AGO2 4 1830 0.010752688 0.0026534924 2.018733 AAAAAA,AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SART3 6 2634 0.015053763 0.0038186524 1.978989 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC5 5 2400 0.012903226 0.0034795387 1.890764 AGAAAA,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SYNCRIP 3 1634 0.008602151 0.0023694485 1.860146 AAAAAA AAAAAA,UUUUUU
G3BP2 3 1644 0.008602151 0.0023839405 1.851349 AGGAUU,GGAUGG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPC3 2 1234 0.006451613 0.0017897669 1.849888 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
IGF2BP1 1 831 0.004301075 0.0012057377 1.834781 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
ACO1 2 1283 0.006451613 0.0018607779 1.793754 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 2 1283 0.006451613 0.0018607779 1.793754 AUAUAG,CUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ESRP2 4 2150 0.010752688 0.0031172377 1.786357 GGGAAA,GGGAAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPAB 3 1782 0.008602151 0.0025839306 1.735130 AAAGAC,AAGACA,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPU 3 1965 0.008602151 0.0028491350 1.594173 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
PABPC1 8 4443 0.019354839 0.0064402624 1.587503 AAAAAA,ACAAAC,AGAAAA,CAAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
NELFE 5 3028 0.012903226 0.0043896388 1.555558 CUCUGG,CUGGUU,GUCUCU,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
SRSF4 6 3740 0.015053763 0.0054214720 1.473368 AAGAAG,AGAAGA,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ELAVL3 4 2867 0.010752688 0.0041563169 1.371320 AUUUAU,UAUUUA,UUAUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
EIF4B 1 1179 0.004301075 0.0017100607 1.330650 GUCGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZNF638 2 1773 0.006451613 0.0025708878 1.327393 GGUUGU,GUUGUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
KHDRBS2 2 1858 0.006451613 0.0026940701 1.259872 AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
TRA2A 10 6871 0.023655914 0.0099589296 1.248138 AAAGAA,AAGAAG,AAGAGG,AGAAGA,GAAAGA,GAAGAA,GAAGAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PUM2 2 1890 0.006451613 0.0027404447 1.235250 UAGAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL4 7 5105 0.017204301 0.0073996354 1.217243 AAAAAA,AUUUAU,UAUUUA,UUAUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ENOX1 4 3195 0.010752688 0.0046316558 1.215097 AAGACA,AUACAG,UAGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
DAZAP1 8 5964 0.019354839 0.0086445016 1.162840 AAAAAA,AGAUAU,AGGUAA,AGUUAG,AGUUUG,UAGUUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
IGF2BP3 6 4815 0.015053763 0.0069793662 1.108956 AAAACA,AAACAC,ACAAAC,ACAUUC,CAAACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
MSI1 3 2770 0.008602151 0.0040157442 1.099030 AGUUAG,AGUUGG,UAGUUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SF1 6 4931 0.015053763 0.0071474739 1.074619 AUUAAC,UAACAA,UACGAA,UGCUAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPLL 4 3534 0.010752688 0.0051229360 1.069655 ACAAAC,ACACCA,CAAACA,GCAUAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
RBM3 2 2152 0.006451613 0.0031201361 1.048051 AUACGA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
FUS 4 3648 0.010752688 0.0052881452 1.023864 AAAAAA,UGGUGU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
TRA2B 9 7329 0.021505376 0.0106226650 1.017552 AAAGAA,AAGAAG,AAUAAG,AGAAGA,GAAAGA,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 7 0.09090909 0.0005239717 7.438792 ACAAGA ACAAGA,CAAGAC
ELAVL2 1 28 0.09090909 0.0018993974 5.580811 GAUUUU AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 2 216 0.007142857 0.001093309 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 2 263 0.007142857 0.001330109 2.424957 AACAAC,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC3 2 310 0.007142857 0.001566909 2.188580 AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ERI1 1 228 0.004761905 0.001153769 2.045185 UUCAGA UUCAGA,UUUCAG
TUT1 1 230 0.004761905 0.001163845 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SSB 3 505 0.009523810 0.002549375 1.901395 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZFP36L2 5 774 0.014285714 0.003904676 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SNRPB2 1 288 0.004761905 0.001456066 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF2 5 881 0.014285714 0.004443773 1.684716 AUGUGU,GUUGUU,UAUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPC5 3 596 0.009523810 0.003007860 1.662801 AGAAAA,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SF1 7 1294 0.019047619 0.006524587 1.545652 ACUUAU,AUUAAC,CACAGA,UAACAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
RBM41 2 502 0.007142857 0.002534260 1.494937 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
A1CF 2 598 0.007142857 0.003017936 1.242939 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
ZNF638 2 646 0.007142857 0.003259774 1.131729 GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM46 4 1091 0.011904762 0.005501814 1.113560 AAUCAU,AUCAUU,AUGAAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF1 4 1097 0.011904762 0.005532044 1.105654 UGUCUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ZCRB1 2 666 0.007142857 0.003360540 1.087808 AAUUAA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.003375655 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
QKI 3 904 0.009523810 0.004559653 1.062615 AAUCAU,ACUUAU,AUUAAC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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