ENSG00000061938:-:3:195872275:195888606

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000061938:-:3:195872275:195888606 ENSG00000061938 ENST00000333602 - 3 195872276 195888606 1469 AGGCUGGGAGGCGGCAGAAUGCAGCCAGAGGAGGGCACAGGCUGGCUGCUGGAGCUGCUGUCCGAGGUGCAGCUGCAACAGUACUUCCUGCGGCUCCGAGAUGACCUCAACGUCACCCGCCUGUCCCACUUUGAGUACGUCAAGAAUGAGGACCUGGAGAAGAUCGGCAUGGGUCGGCCUGGCCAGCGGCGGCUGUGGGAGGCUGUGAAGAGGAGGAAGGCCUUGUGCAAACGCAAGUCGUGGAUGAGUAAGGUGUUCAGUGGAAAGCGACUGGAGGCUGAGUUCCCACCUCAUCACUCUCAGAGCACCUUCCGGAAGACCUCGCCCGCCCCUGGGGGCCCAGCAGGGGAGGGGCCCCUGCAGAGCCUCACCUGCCUCAUUGGGGAGAAGGACCUGCGCCUCCUGGAGAAGCUGGGUGAUGGUUCCUUUGGCGUGGUGCGCAGGGGCGAGUGGGACGCGCCCUCAGGGAAGACGGUGAGUGUGGCUGUGAAGUGCCUGAAGCCCGAUGUCCUGAGCCAGCCAGAAGCCAUGGACGACUUCAUCCGGGAGGUCAAUGCCAUGCACUCGCUCGACCACCGAAACCUCAUCCGCCUCUACGGGGUGGUGCUCACGCCGCCCAUGAAGAUGGUGACAGAGCUGGCACCUCUGGGAUCGUUGUUGGACCGGCUACGUAAGCACCAGGGCCACUUCCUCCUGGGGACUCUGAGCCGCUACGCUGUGCAGGUGGCUGAGGGCAUGGGCUACCUGGAGUCCAAGCGCUUUAUUCACCGUGACCUGGCUGCCCGCAAUCUGCUGUUGGCUACCCGCGACCUGGUCAAGAUCGGGGACUUUGGGCUGAUGCGAGCACUACCUCAGAAUGACGACCAUUACGUCAUGCAGGAACAUCGCAAGGUGCCCUUCGCCUGGUGUGCCCCCGAGAGCCUGAAGACACGCACCUUCUCCCAUGCCAGCGACACCUGGAUGUUCGGGGUGACACUGUGGGAAAUGUUCACCUACGGCCAGGAGCCCUGGAUCGGCCUCAACGGCAGUCAGAUCCUGCAUAAGAUCGACAAGGAGGGGGAGCGGCUGCCCCGGCCCGAGGACUGUCCCCAGGACAUCUACAACGUCAUGGUCCAGUGCUGGGCUCACAAGCCAGAGGACAGACCCACGUUUGUGGCCCUGCGGGACUUCCUGCUGGAGGCCCAGCCCACAGACAUGCGGGCCCUUCAGGACUUUGAGGAACCGGACAAGCUGCACAUCCAGAUGAAUGAUGUCAUCACCGUCAUCGAGGGAAGGGCCGAGAACUACUGGUGGCGUGGCCAGAACACACGGACGCUGUGUGUGGGGCCCUUCCCUCGCAACGUGGUGACCUCCGUGGCCGGCCUGUCGGCCCAGGACAUCAGCCAGCCCCUGCAGAACAGCUUCAUCCACACAGGGCAUGGCGACAGUGACCCCCGCCACUGCUGGGGCUUCCCGGACAGGAUUGACGAAGGCUGGGAGGCGGCAGAAUGCAGCCAGAGGAGGGCACAGGCUGGCUGCU circ
ENSG00000061938:-:3:195872275:195888606 ENSG00000061938 ENST00000333602 - 3 195872276 195888606 22 AGGAUUGACGAAGGCUGGGAGG bsj
ENSG00000061938:-:3:195872275:195888606 ENSG00000061938 ENST00000333602 - 3 195888597 195888806 210 CGCCCUAAUUGUGCCCUGUGGCUGGCAGGAAUAGGGGACGUGGGUCCAGGCGGUUCUCGGUAGCUUCCCUCGGGAGUCAGAAGGUGGUGUGAGCCCUUCCGGGUGGCCGUGUAGUGGGAUGAAGGUGAGCCCAGGUCACUCGGGCAGGCCCCUGUUGUCCCCCCACAACCCUUGUCCCUGAGCCACUCCUCCCCCCACAGAGGCUGGGAG ie_up
ENSG00000061938:-:3:195872275:195888606 ENSG00000061938 ENST00000333602 - 3 195872076 195872285 210 GGAUUGACGAGUGAGUACUGGGCGGGGAUGGAUGCUGACCUGGCCCCGCUCGGGACUCCAGGGCCCUCAGCACGGCACGCGUGGGCGGAAUCUGCUCUUCACCCUUUCGCCCGGGCUUCAGCCCCCGACCCGCCACUCUCCCCUCCUCACCCUGGCCUUACUCUCGGGAAGCUGUGGAACCCUAGGAAGCCCAGCCUGGUGGGGGUUCUC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001361470 0.0001130379 3.590287 GCAUAA GCAUAA
SUPV3L1 2 199 0.002042206 0.0002898408 2.816796 CCGCCC CCGCCC
CNOT4 2 314 0.002042206 0.0004564992 2.161444 GACAGA GACAGA
RBM8A 4 611 0.003403676 0.0008869128 1.940229 ACGCGC,CGCGCC,GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
RBM25 1 268 0.001361470 0.0003898359 1.804227 AUCGGG AUCGGG,CGGGCA,UCGGGC
IGF2BP1 4 831 0.003403676 0.0012057377 1.497178 AAGCAC,AGCACC,CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRP14 4 847 0.003403676 0.0012289250 1.469697 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ANKHD1 1 339 0.001361470 0.0004927293 1.466298 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
IFIH1 4 904 0.003403676 0.0013115296 1.375843 GGCCCU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
NONO 7 1498 0.005445882 0.0021723567 1.325905 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM42 1 407 0.001361470 0.0005912752 1.203264 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 1 411 0.001361470 0.0005970720 1.189189 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
HNRNPH3 36 7688 0.025187202 0.0111429292 1.176562 AAGGUG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CGAGGG,GAAGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUCG,UCGAGG,UGGGUG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
ZC3H10 4 1053 0.003403676 0.0015274610 1.155958 CAGCGA,CCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
ESRP2 9 2150 0.006807352 0.0031172377 1.126826 GGGAAA,GGGAAG,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPH2 44 9711 0.030633084 0.0140746688 1.121990 AAGGUG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUCG,UCGAGG,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
CELF4 7 1782 0.005445882 0.0025839306 1.075598 GGUGUG,GGUGUU,GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPH1 46 10717 0.031994554 0.0155325680 1.042530 AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUCGGG,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAGGAA,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUCG,UCGAGG,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
FXR2 14 3434 0.010211028 0.0049780156 1.036485 AGACGG,GACAAG,GACAGA,GACAGG,GACGAA,GGACAA,GGACAG,GGACGA,UGACAG,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
CELF6 12 2997 0.008849558 0.0043447134 1.026344 GUGAUG,GUGGGG,GUGGUG,GUGUGG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 4 0.09090909 0.0003274823 8.116864 GACGAA AGACGU,GACGAA,GACGUA,GACGUU
FXR2 1 29 0.09090909 0.0019648939 5.531901 GACGAA AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 CGAAGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
FMR1 1 117 0.09090909 0.0077285827 3.556149 CGAAGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF7 1 128 0.09090909 0.0084490438 3.427565 GAAGGC AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF9 1 134 0.09090909 0.0088420225 3.361976 GAAGGC AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 4 625 0.22727273 0.0410007860 2.470701 ACGAAG,CGAAGG,GAAGGC,GACGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 1 479 0.09090909 0.0314383023 1.531901 GAAGGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 2 53 0.007142857 0.0002720677 4.714464 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SAMD4A 7 790 0.019047619 0.0039852882 2.256855 CGGGAA,CGGGAC,CGGGCA,CUGGCA,CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
RBM28 2 340 0.007142857 0.0017180572 2.055723 GUGUAG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 GGAUGA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
G3BP1 24 3431 0.059523810 0.0172914148 1.783411 ACCCGC,AGGCCC,CAGGCC,CCACAG,CCAGGC,CCCACA,CCCAGG,CCCCAC,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCUC,CCCGCC,CCCUAG,CCCUCC,CCCUCG,CCUAGG,CCUCGG,CGGCAC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPK 17 3244 0.042857143 0.0163492543 1.390311 ACCCGC,ACCCUU,CAACCC,CCCCAC,CCCCCA,CCCCCC,GCCCAG,GCCCCC,GCCCCU,UCCCCC,UCCCCU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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