ENSG00000009307:-:1:114719578:114725333

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000009307:-:1:114719578:114725333 ENSG00000009307 ENST00000690784 - 1 114719579 114725333 1372 UGAGUUCUCUGGUGAUGUUGAUAGCCUGGAACUGGGGGACAUGGUCGAGUAUAGCUUGUCCAAAGGCAAAGGCAACAAAGUCAGUGCAGAAAAAGUGAACAAAACACACUCAGUGAAUGGCAUUACUGAGGAAGCUGAUCCCACCAUUUACUCUGGCAAAGUAAUUCGCCCCCUGAGGAGUGUUGAUCCAACACAGACUGAGUACCAAGGAAUGAUUGAGAUUGUGGAGGAGGGCGAUAUGAAAGGUGAGGUCUAUCCAUUUGGCAUCGUUGGGAUGGCCAACAAAGGGGAUUGCCUGCAGAAAGGGGAGAGCGUCAAGUUCCAAUUGUGUGUCCUGGGCCAAAAUGCACAAACUAUGGCUUACAACAUCACACCCCUGCGCAGGGCCACAGUGGAAUGUGUGAAAGAUCAGGUAAGUGCCAGCAUCUCUGUAUCUGAAUUUGAUCCUUCUAUGAGUUGGUAACCAAAACCUUCAAAUAUUUUCAGCCAAGGGGAAAUCAUCAACAUUCAUUCGUUUUUUUAUUUCUACUUCACCUUUUUUCAGUCAUUUGAGGUAGCUUAAUAAAAACAGAAAACUACACAAAAAGUGACUAUAUUAGCAAUGAGAAAGUAAGAUUGGUAUUAGUAACUAAUAUUAUGCAAUGGGGAAAAUAAGUUAGGGGUGAGAUUUCCAGAAUAGAAGGACUAUAUGGUUUUGUACACUUUUGCUUAGAGCUUCUUUUGCAUAUCACACAAACACAGAAACCACGUUCAAAAGUACUUAAAAAAUAAGCUUAGGGCAAACAAACUUAGUCUUACUCCUGAGAUCUCAGGGAAAUCUGAGUCCUCAGAAUGUUUUUCAUCAGUACAGAGAAUAAUAACAUUUUGUAUGGCUGCUACUAUAACCCAGCUUAAUUCUAGAGGGGAUCCAAACAAUAUAUAUGUUGAAGUAACAGCUUCCUGAUGAGUUUGCUUAAUUCAAAAAGCUUAGUUCAUAAUAUACGAAGGAACAAGGCAAGUUUUAUUUGUUUGGUUCAAGUUUGUGAUAUAGUGAAUGGCACUUUCAGAGAUACAUUUCUUCCCUGACAGGUUUUGCCACAGGCAGCUGGACUGGAGUAUCAACAUUAAUACCAUGUUUUAUACAUCCUUUUAGAUAGGGGCAGGCAUUGUGCUUCAUUCAGAGUGAGGUGUGGCAUGCCCUCUCUUUUUUACCUACUUUUUUUUUUCAGUUUGGCUUCAUUAACUAUGAAGUAGGAGAUAGCAAGAAGCUCUUUUUCCAUGUGAAAGAAGUUCAGGAUGGCAUUGAGCUACAGGCAGGAGAUGAGGUGGAGUUCUCAGUGAUUCUUAAUCAGCGCACUGGCAAGUGCAGCGCCUGUAAUGUUUGGCGAGUCUGUGAGUUCUCUGGUGAUGUUGAUAGCCUGGAACUGGGGGACAUGGUCGAGU circ
ENSG00000009307:-:1:114719578:114725333 ENSG00000009307 ENST00000690784 - 1 114719579 114725333 22 UGGCGAGUCUGUGAGUUCUCUG bsj
ENSG00000009307:-:1:114719578:114725333 ENSG00000009307 ENST00000690784 - 1 114725324 114725533 210 UAUCCUGAAGUUAGGGAUAAUGUUACCUCUUCAUGGGGCAUUCUUGAGGAUUAAAUGAGUCAAUACAUAGAAAUUACUUAAAAUGGUGUCUAAUGUAAAUAAGCAUGCCAUGCCAUGACUGUUACUGUAAAAUAAAGACUGCCUGUUACUGUUGAUGUUUAUGGUAAUGUUUAGUUAAAUGUCAUUUCCUUUCUCCUUAGUGAGUUCUCU ie_up
ENSG00000009307:-:1:114719578:114725333 ENSG00000009307 ENST00000690784 - 1 114719379 114719588 210 GGCGAGUCUGGUGAGUUUUGUUGUUGUGGUUUGAUUAGUAACUACCCUGGAGUGUCUCAACUUUAUAGUCUCUGUUUUGUCACAUCACUUUUCUGUGCCUUGUCUUCUGCCACUUAUUAUUUCUUGAUACUUCCUACUUCUAGUUGAAUACAAAAAGAUUGUUUAGUACAUGUUUUUUAAAAUUUUUGCCAAAUUCUUCUUCUUCCAUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO1 6 548 0.005102041 0.0007956130 2.680936 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPA1L2 3 314 0.002915452 0.0004564992 2.675035 AUAGGG,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
CPEB4 9 821 0.007288630 0.0011912456 2.613177 UUUUUU UUUUUU
DDX19B 9 821 0.007288630 0.0011912456 2.613177 UUUUUU UUUUUU
EIF4A3 9 821 0.007288630 0.0011912456 2.613177 UUUUUU UUUUUU
ERI1 6 632 0.005102041 0.0009173461 2.475536 UUCAGA,UUUCAG UUCAGA,UUUCAG
U2AF2 14 1477 0.010932945 0.0021419234 2.351703 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBMS1 4 497 0.003644315 0.0007217036 2.336169 AUAUAC,AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 3 426 0.002915452 0.0006188101 2.236151 AUAUAU,UAUAUA AUAUAU,UAUAUA
RALY 13 1553 0.010204082 0.0022520629 2.179827 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMS3 9 1283 0.007288630 0.0018607779 1.969742 AAUAUA,AUAUAG,AUAUAU,CUAUAU,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CPEB2 16 2261 0.012390671 0.0032780993 1.918323 CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
PTBP2 1 267 0.001457726 0.0003883867 1.908154 CUCUCU CUCUCU
RBM42 2 407 0.002186589 0.0005912752 1.886780 AACUAA,AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
TARDBP 18 2654 0.013848397 0.0038476365 1.847675 GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPCL1 13 2062 0.010204082 0.0029897078 1.771070 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 10 1634 0.008017493 0.0023694485 1.758600 AAAAAA,UUUUUU AAAAAA,UUUUUU
KHDRBS2 11 1858 0.008746356 0.0026940701 1.698895 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
NOVA1 22 3872 0.016763848 0.0056127669 1.578569 AUCAAC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,UCAGUC,UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPC 19 3471 0.014577259 0.0050316361 1.534620 CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 10 1965 0.008017493 0.0028491350 1.492627 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CSTF2 10 1967 0.008017493 0.0028520334 1.491160 GUGUGU,GUGUUG,GUUUUG,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ELAVL3 14 2867 0.010932945 0.0041563169 1.395304 UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL4 25 5105 0.018950437 0.0073996354 1.356705 AAAAAA,GUAUCU,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPM 4 999 0.003644315 0.0014492040 1.330387 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
IGF2BP3 23 4815 0.017492711 0.0069793662 1.325586 AAAAAC,AAAACA,AAACAC,AAAUCA,AACACA,AAUUCA,ACAAAC,ACACAC,ACACUC,ACAUUC,CAAACA,CACACA,CACUCA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PABPC3 5 1234 0.004373178 0.0017897669 1.288910 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRP14 3 847 0.002915452 0.0012289250 1.246323 CCUGUA,CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
TIAL1 47 10182 0.034985423 0.0147572438 1.245331 AGUUUU,AUUUUC,AUUUUG,CAGUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UCAGUU,UUAUUU,UUCAGU,UUUAUU,UUUCAG,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ESRP2 9 2150 0.007288630 0.0031172377 1.225379 GGGAAA,GGGGAA,GGGGAG,GGGGAU,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
TIA1 41 9206 0.030612245 0.0133428208 1.198045 AUUUUC,AUUUUG,CUUUUA,CUUUUG,CUUUUU,GUUUUA,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPL 22 5085 0.016763848 0.0073706513 1.185489 AAACAA,AAACAC,AAAUAA,AACAAA,AACACA,AAUAAA,ACACAA,ACACAC,CACAAA,CACACA,CACACC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS1 17 4064 0.013119534 0.0058910141 1.155129 AUAAAA,AUUUAC,CAAAAU,GAAAAC,UAAAAA,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPA0 1 453 0.001457726 0.0006579386 1.147695 AGUAGG AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.002186589 0.0009985015 1.130845 AAGAAG AAGAAG
A1CF 6 1642 0.005102041 0.0023810421 1.099481 AGUAUA,AUCAGU,GAUCAG,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF2 7 1886 0.005830904 0.0027346479 1.092364 AUGUGU,GUCUGU,GUGUGU,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 5 1415 0.004373178 0.0020520728 1.091600 GUGUGG,GUGUGU,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ELAVL1 22 5554 0.016763848 0.0080503280 1.058234 UAUUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGGUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS3 13 3429 0.010204082 0.0049707696 1.037605 AAAUAA,AAUAAA,AUAAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBMX 19 4925 0.014577259 0.0071387787 1.029970 AAGAAG,AAGGAA,AAGUAA,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCCCA,GAAGGA,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SNRNP70 4 1237 0.003644315 0.0017941145 1.022376 AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC4 4 1251 0.003644315 0.0018144033 1.006152 AAAAAA,AAAAAG AAAAAA,AAAAAG
NOVA2 15 4013 0.011661808 0.0058171047 1.003418 AGAUCA,AGGCAU,AGUCAU,AUCAAC,AUCAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RC3H1 1 2 0.09090909 0.0001964894 8.853829 UCUGUG CCUUCU,CUUCUG
CELF2 1 5 0.09090909 0.0003929788 7.853829 GUCUGU AUGUGU,GUCUGU,UAUGUU,UGUGUG,UGUUGU
CELF6 1 7 0.09090909 0.0005239717 7.438792 UGUGAG GUGAGG,GUGUUG,UGUGGG,UGUGUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
TUT1 2 230 0.007142857 0.0011638452 2.617602 CAAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACAU,AUACUU,UACAUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,GUACAU,UAAAUA,UACAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUU,GGAUAA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM4 7 1094 0.019047619 0.0055169287 1.787673 CCUCUU,CUUCCU,CUUCUU,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 ACUUAA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUUGUG,GUUGUU,GUUUUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SRSF3 21 3825 0.052380952 0.0192765014 1.442199 AACUUU,ACAUCA,ACUUCU,ACUUUA,CACAUC,CAUCAC,CCUCUU,CUCUUC,CUUCAU,CUUCUU,CUUUAU,UACAAA,UACUUC,UCUUCA,UCUUCC,UUCUCC,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
YTHDC1 6 1254 0.016666667 0.0063230552 1.398272 GAAUAC,GACUGC,GCAUGC,UAGUAC,UCCUAC,UGAUAC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUGUU,GUAAAU,GUACAU,UAAAUA,UAAUGU,UACAUA,UGUAAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAUACA,AGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGUUAG,UAGUAA,UAGUUA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AAUAAA,AUAAAG,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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