ENSG00000141556:+:17:82763964:82814934

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000141556:+:17:82763964:82814934 ENSG00000141556 ENST00000681983 + 17 82763965 82814934 1083 AAUGGAUGAUGAACUUGUUGUUGGACAUAGUGCAAGAUCAGACAUCUCCAGCUUCCCUUGUACAUCUGGCUUUUAAAUUUCUUUACAUCAUCACCAAGGUUCGAGGCUAUAAAACAUUUCUUCGUUUAUUUCCUCAUGAAGUUGCCGAUGUAGAGCCUGUUUUAGAUUUGGUCACAAUUCAGAAUCCCAAGGACCAUGAAGCUUGGGAAACCCGCUACAUGCUUUUGCUCUGGCUCUCCGUGACCUGCCUGAUCCCUUUUGAUUUUUCUCGCCUUGACGGGAACCUCCUCACCCAGCCUGGGCAAGCACGAAUGUCCAUAAUGGACCGUAUUCUCCAAAUAGCAGAGUCCUACUUGAUUGUCAGUGACAAGGCCCGAGAUGCAGCUGCUGUCCUUGUGUCCAGAUUUAUCACACGUCCUGAUGUCAAGCAAAGCAAGAUGGCUGAGUUCCUGGACUGGAGCCUGUGCAAUCUGGCCCGUUCCUCCUUCCAGACCAUGCAGGGGGUCAUCACCAUGGAUGGGACGCUGCAGGCCCUGGCACAAAUAUUUAAACAUGGAAAACGUGAAGACUGUUUGCCCUAUGCUGCCACUGUCCUCAGGUGCCUCGAUGGCUGCAGACUCCCUGAGAGCAACCAGACCCUGCUGCGGAAGCUGGGGGUGAAGCUUGUGCAGCGACUGGGGCUGACAUUCCUGAAGCCGAAGGUGGCAGCAUGGAGGUACCAGCGUGGCUGCCGAUCUUUGGCUGCAAAUCUGCAGCUCCUCACUCAGGGUCAGAGUGAGCAGAAGCCACUCAUCCUGACCGAAGAUGACGACGAAGAUGACGACGUCCCAGAGGGGGUGGAGCGUGUGAUAGAGCAGCUGCUGGUCGGGCUGAAGGACAAGGACACGGUCGUGCGGUGGUCUGCAGCCAAGGGCAUCGGUAGGAUGGCUGGCAGGCUUCCCAGAGCCCUGGCGGAUGAUGUGGUCGGGUCUGUGCUGGACUGCUUCAGUUUCCAGGAGACUGACAAGGCGUGGCAUGGGGGAUGUCUGGCGCUGGCAGAGCUGGGCAGGAGAGGCCUGUUGCUGCCGUCUCGACUCGUGGAUGAAUGGAUGAUGAACUUGUUGUUGGACAUAGUGCAAGAUCAGACAUCUCCA circ
ENSG00000141556:+:17:82763964:82814934 ENSG00000141556 ENST00000681983 + 17 82763965 82814934 22 ACUCGUGGAUGAAUGGAUGAUG bsj
ENSG00000141556:+:17:82763964:82814934 ENSG00000141556 ENST00000681983 + 17 82763765 82763974 210 GGUUUUGCUCUGUUGCCCAGGCUGGAGUGCAAUAGUAGGAUCAUAGCUCAUUGCCGCCUUGAAAUUCUGGCUUCAAAUGAUCCUCCCACCUUGGUCUCCCAAAGUGCUGGGAAAACAGGCAUGAGCCACCACACCUGGCCGGCCUCAAUGUCAUGUUGAUGUUCACUUUUACAGUAAAUGUUUCCUAUGUUUUUCCCUAGAAUGGAUGAU ie_up
ENSG00000141556:+:17:82763964:82814934 ENSG00000141556 ENST00000681983 + 17 82814925 82815134 210 CUCGUGGAUGGUGAGUAGCUGAGGCACGGUCAGGGGGGAUGUCUGGCGCUGGCGGAGCUGGGCAGGAGAGGCCUGUUGCUGCCAUCUCGACUCGUGGAUGGUGAGUAGCUGAAGCACGGUCAGCUGCGUCACCAGGCUGUCCGUGGCAGGCUGCAGCCCUUCGUCUGAACCCAUCUCCGCGGUGUGGCCCUGCCGCGGGCACGCCCAGAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 4 411 0.004616805 0.0005970720 2.950918 ACGACG,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBM25 1 268 0.001846722 0.0003898359 2.244028 UCGGGC AUCGGG,CGGGCA,UCGGGC
ANKHD1 1 339 0.001846722 0.0004927293 1.906099 GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ZC3H10 4 1053 0.004616805 0.0015274610 1.595759 CAGCGA,CCAGCG,GCAGCG,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
SRP14 3 847 0.003693444 0.0012289250 1.587570 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
G3BP2 6 1644 0.006463527 0.0023839405 1.438973 AGGAUG,GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 4 1260 0.004616805 0.0018274462 1.337066 CUGUUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ZFP36L2 4 1277 0.004616805 0.0018520827 1.317746 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA3 7 2140 0.007386888 0.0031027457 1.251421 CAAGGA,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
AGO1 1 548 0.001846722 0.0007956130 1.214828 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
IGF2BP1 2 831 0.002770083 0.0012057377 1.200013 AAGCAC,CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SAMD4A 13 3992 0.012927054 0.0057866714 1.159588 CGGGAA,CGGGUC,CUGGAC,CUGGCA,CUGGCC,CUGGUC,GCUGGA,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
FXR2 11 3434 0.011080332 0.0049780156 1.154359 GACAAG,GACGAA,GACGGG,GGACAA,UGACAA,UGACGA,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
IFIH1 2 904 0.002770083 0.0013115296 1.078679 GCGGAU,GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
PUM2 5 1890 0.005540166 0.0027404447 1.015519 GUACAU,UACAUC,UGUACA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ERI1 1 632 0.001846722 0.0009173461 1.009429 UUCAGA UUCAGA,UUUCAG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TARDBP 2 10 0.13636364 0.0007204611 7.564323 GAAUGG,UGAAUG GAAUGA,GAAUGU,GUUUUG,UGUGUG,UUGUGC,UUGUUC
G3BP2 1 9 0.09090909 0.0006549646 7.116864 GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUGA,GGAUGG,GGAUUG
RBM46 2 14 0.13636364 0.0009824469 7.116864 AUGAAU,GAUGAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
SRSF2 2 479 0.13636364 0.0314383023 2.116864 AUGAAU,UGAAUG AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.0410007860 1.733736 GAUGAA,GGAUGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM14 1 53 0.004761905 0.0002720677 4.129501 CGCGGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
RBM25 1 53 0.004761905 0.0002720677 4.129501 CGGGCA AUCGGG,CGGGCA,UCGGGC
IFIH1 4 146 0.011904762 0.0007406288 4.006644 CCGCGG,GCCGCG,GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGG,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
G3BP2 3 490 0.009523810 0.0024738009 1.944809 GGAUGA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SAMD4A 5 790 0.014285714 0.0039852882 1.841817 CGGGCA,CUGGCC,GCGGGC,GCUGGA,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAGUG,AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAA,GGGGAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACCACA,CACACC,CACCAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
YBX1 6 1321 0.016666667 0.0066606207 1.323237 ACCACA,CACACC,CACCAC,CCACAC,CCACCA,CCCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUGGCU,GGUCUC,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
G3BP1 15 3431 0.038095238 0.0172914148 1.139555 ACAGGC,ACCCAU,ACGCCC,AGGCAC,CACGCC,CAGGCA,CCACAC,CCAGGC,CCCACC,CCCAGG,CCCAUC,CCCUAG,CCGGCC,CUCCGC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAU,AUCAUA,GAUCAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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