ENSG00000164933:-:8:103404775:103407784

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000164933:-:8:103404775:103407784 ENSG00000164933 ENST00000297578 - 8 103404776 103407784 237 UGAGUGAUGGAUUGGAACUGAGACCGAAAUAUAAUGGAAUUUUACAUUGCUUGACUACCAUUUGGAAACUUGAUGGACUACGGGGACUUUAUCAAGGAGUAACCCCAAAUAUAUGGGGUGCAGGUUUAUCCUGGGGACUCUACUUUUUCUUUUACAAUGCCAUCAAGUCAUAUAAAACAGAAGGAAGAGCUGAACGUUUAGAGGCAACAGAAUACCUUGUCUCAGCUGCUGAAGCUGUGAGUGAUGGAUUGGAACUGAGACCGAAAUAUAAUGGAAUUUUACAUUGC circ
ENSG00000164933:-:8:103404775:103407784 ENSG00000164933 ENST00000297578 - 8 103404776 103407784 22 UGCUGAAGCUGUGAGUGAUGGA bsj
ENSG00000164933:-:8:103404775:103407784 ENSG00000164933 ENST00000297578 - 8 103407775 103407984 210 UUUUACAUAUUUAUAUAUAUAUAUAUUUAUAUAUAUAUGUAAUAUAUAUAUAAAAGCCUGGAAAAUAAUUUUUUCUACCUAAAAAAGUUUUUCUUCUAAGUUUAUCUCCUUUAUAUAACCAAUUGUACAGUGUCUGUGUUUAUAUGUGAUACAGAGCUAGAACUUUGUUCUUACCUGACUUUGUGUAUCCCUUGAUGCAGUGAGUGAUGG ie_up
ENSG00000164933:-:8:103404775:103407784 ENSG00000164933 ENST00000297578 - 8 103404576 103404785 210 GCUGAAGCUGGUAAGGCAAUGUGUGAAAUAUAAAAAUGUCACCUUCCAAACUUAAUUUUCAGUUUUGGUUUUUGAUUUCUUUUCUUUGAACACCUGAGUUUAAAUAUGCCCAUCUAACUGUAUUAAAUCAGUUACAUGGAAUUUCUGUUUUUUUUGUUUGUUUGUUUUUCGGUUUUUGGUUUUUUUUUUUGAGGCGGAGUUUCGCUCUUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 1 407 0.008438819 0.0005912752 3.835139 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
AKAP1 1 426 0.008438819 0.0006188101 3.769472 AUAUAU AUAUAU,UAUAUA
RBMS3 4 1283 0.021097046 0.0018607779 3.503063 AAUAUA,AUAUAU,CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM41 3 1318 0.016877637 0.0019115000 3.142336 UACAUU,UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPM 2 999 0.012658228 0.0014492040 3.126743 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
EIF4B 2 1179 0.012658228 0.0017100607 2.887956 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SNRNP70 2 1237 0.012658228 0.0017941145 2.818732 AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC3 1 1234 0.008438819 0.0017897669 2.237269 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA3 2 2140 0.012658228 0.0031027457 2.028458 AAGGAG,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
U2AF2 1 1477 0.008438819 0.0021419234 1.978134 UUUUUC UUUUCC,UUUUUC,UUUUUU
RALY 1 1553 0.008438819 0.0022520629 1.905794 UUUUUC UUUUUC,UUUUUG,UUUUUU
RBM24 2 2357 0.012658228 0.0034172229 1.889179 GAGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 1 1605 0.008438819 0.0023274215 1.858308 GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
KHDRBS1 4 4064 0.021097046 0.0058910141 1.840453 AUAAAA,UAAAAC,UUUUAC AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBMX 5 4925 0.025316456 0.0071387787 1.826326 AAGGAA,AGAAGG,AGGAAG,AGUAAC,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
G3BP2 1 1644 0.008438819 0.0023839405 1.823693 GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
KHDRBS2 1 1858 0.008438819 0.0026940701 1.647254 AUAAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
QKI 2 2805 0.012658228 0.0040664663 1.638228 UCAUAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF6 2 2997 0.012658228 0.0043447134 1.542743 GUGAUG,UGUGAG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPCL1 1 2062 0.008438819 0.0029897078 1.497037 CUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
ESRP2 1 2150 0.008438819 0.0031172377 1.436773 UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 1 2152 0.008438819 0.0031201361 1.435432 GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
YTHDC1 4 5576 0.021097046 0.0080822104 1.384219 GAAUAC,GACUAC,GGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
CPEB2 1 2261 0.008438819 0.0032780993 1.364181 CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
KHDRBS3 2 3429 0.012658228 0.0049707696 1.348534 AUAAAA,UAAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPC 2 3471 0.012658228 0.0050316361 1.330976 CUUUUU,UUUUUC AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SRSF4 2 3740 0.012658228 0.0054214720 1.223319 AGGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PPIE 13 18315 0.059071730 0.0265436196 1.154103 AAAUAU,AAUAUA,AAUUUU,AUAAAA,AUAUAA,AUAUAU,AUUUUA,UAUAAA,UAUAAU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
NOVA2 2 4013 0.012658228 0.0058171047 1.121702 AGUCAU,GAGGCA AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBM5 4 6879 0.021097046 0.0099705232 1.081300 AAGGAA,AAGGAG,CAAGGA,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
MSI1 1 2770 0.008438819 0.0040157442 1.071374 AGGAAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPD 1 2837 0.008438819 0.0041128408 1.036906 UUAGAG AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL3 1 2867 0.008438819 0.0041563169 1.021735 AUUUUA AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
LIN28A 2 4315 0.012658228 0.0062547643 1.017048 AGGAGU,GGAGUA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF6 1 7 0.09090909 0.0005239717 7.438792 UGUGAG GUGAGG,GUGUUG,UGUGGG,UGUGUG
PTBP1 2 30 0.13636364 0.0020303904 6.069558 AGCUGU,GCUGUG AGCUGU,CAUCUU,CCAUCU,CCUCUU,CUAUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUUCU,GGCUCC,GUCUUU,UACUUU,UAUUUU,UCCUCU,UCUAUC,UCUCUU,UCUUCU,UCUUUC,UUACUU,UUCUUC,UUCUUG,UUUCUU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 AGCUGU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 23 221 0.057142857 0.001118501 5.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 12 217 0.030952381 0.001098347 4.816644 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 25 562 0.061904762 0.002836558 4.447837 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 15 764 0.038095238 0.003854293 3.305073 UAAAUA,UACAUA,UAUAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RALY 17 1117 0.042857143 0.005632809 2.927609 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB4 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
DDX19B 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
EIF4A3 10 691 0.026190476 0.003486497 2.909192 UUUUUU UUUUUU
U2AF2 13 1071 0.033333333 0.005401048 2.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
KHDRBS2 12 1051 0.030952381 0.005300282 2.545909 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPCL1 15 1381 0.038095238 0.006962918 2.451847 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 11 1041 0.028571429 0.005249899 2.444212 AAAAAA,UUUUUU AAAAAA,UUUUUU
ELAVL1 35 3309 0.085714286 0.016676743 2.361698 AUUUAU,UAUUUA,UGAUUU,UGGUUU,UGUUUU,UUGAUU,UUGGUU,UUGUUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPU 11 1136 0.028571429 0.005728537 2.318335 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS1 19 1945 0.047619048 0.009804514 2.280021 AUAAAA,CUAAAA,UAAAAA,UAAAAG,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
PUM1 21 2172 0.052380952 0.010948206 2.258348 AAUUGU,AUUGUA,GUAAUA,UAAAUA,UAAUAU,UACAUA,UAUAUA,UGUAAU,UGUACA,UUGUAC AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
KHDRBS3 15 1646 0.038095238 0.008298065 2.198764 AAAUAA,AUAAAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPC 18 2006 0.045238095 0.010111850 2.161491 AUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ACO1 2 325 0.007142857 0.001642483 2.120623 CAGUGA,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CSTF2 8 1022 0.021428571 0.005154172 2.055723 GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
PPIE 80 9262 0.192857143 0.046669690 2.046975 AAAAAA,AAAAAU,AAAAUA,AAAUAA,AAAUAU,AAUAAU,AAUAUA,AAUUUU,AUAAAA,AUAAUU,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAU,AUUUUU,UAAAAA,UAAAUA,UAAUAU,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UUAAAU,UUAAUU,UUAUAU,UUUAAA,UUUAUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ERI1 1 228 0.004761905 0.001153769 2.045185 UUUCAG UUCAGA,UUUCAG
NOVA1 11 1428 0.028571429 0.007199718 1.988561 AACACC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 11 1434 0.028571429 0.007229948 1.982516 AACACC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
CELF1 8 1097 0.021428571 0.005532044 1.953651 GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CPEB2 11 1487 0.028571429 0.007496977 1.930192 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM41 3 502 0.009523810 0.002534260 1.909974 UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 3 505 0.009523810 0.002549375 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ELAVL3 14 1928 0.035714286 0.009718863 1.877642 AUUUAU,UAUUUA,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TIA1 37 5140 0.090476190 0.025901854 1.804483 AUUUUC,AUUUUU,CUCCUU,CUUUUC,GUUUUG,GUUUUU,UCCUUU,UCUCCU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 39 5597 0.095238095 0.028204353 1.755621 AAUUUU,AGUUUU,AUUUUC,AUUUUU,CAGUUU,CUUUUC,GUUUUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUCAG,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 68 9826 0.164285714 0.049511286 1.730378 AAUUUU,AUAUUU,AUUUAU,AUUUUC,AUUUUU,GUUUUU,UAAGUU,UAAUUU,UAUAUA,UAUAUU,UAUUUA,UCUUUU,UGAUUU,UGUAUU,UUAAUU,UUAUAU,UUCUUU,UUGAUU,UUUAUA,UUUCUU,UUUGAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 11 1711 0.028571429 0.008625554 1.727884 AAAAAA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SNRPB2 1 288 0.004761905 0.001456066 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CELF2 5 881 0.014285714 0.004443773 1.684716 AUGUGU,GUCUGU,UAUGUG,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
A1CF 3 598 0.009523810 0.003017936 1.657976 AUAAUU,AUCAGU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC4 2 462 0.007142857 0.002332729 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
ZFP36L2 4 774 0.011904762 0.003904676 1.608264 AUUUAU,UAUUUA AUUUAU,UAUUUA,UUAUUU,UUUAUU
RC3H1 3 631 0.009523810 0.003184200 1.580608 UCCCUU,UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL4 17 2916 0.042857143 0.014696695 1.544044 AAAAAA,AUCUAA,AUUUAU,UAUUUA,UGUAUC,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CELF5 3 669 0.009523810 0.003375655 1.496371 GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
IGHMBP2 1 350 0.004761905 0.001768440 1.429061 AAAAAA AAAAAA
RBM24 4 888 0.011904762 0.004479041 1.410277 GAGUGA,GUGUGA,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ENOX1 3 756 0.009523810 0.003813986 1.320239 AUACAG,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF4 3 776 0.009523810 0.003914752 1.282618 GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SAMD4A 3 790 0.009523810 0.003985288 1.256855 CUGGAA,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
DAZAP1 13 2878 0.033333333 0.014505240 1.200391 AAAAAA,AGUUUA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZNF638 2 646 0.007142857 0.003259774 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 2 666 0.007142857 0.003360540 1.087808 ACUUAA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPK 13 3244 0.033333333 0.016349254 1.027741 AAAAAA,CCAAAC,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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