ENSG00000105821:-:7:103321931:103322794

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000105821:-:7:103321931:103322794 ENSG00000105821 ENST00000379263 - 7 103321932 103322794 364 UCGUGAUGAGAGGAGAUGGAUUGAAAAGCAGAACAGAGCAACAAGAGCACAAAGAAAAAAAGAAGAAAUGAACAGAAUAAGAACAUUAGUUGACAAUGCAUACAGCUGUGAUCCAAGGAUAAAAAAGUUCAAGGAAGAAGAAAAAGCCAAGAAAGAAGCAGAAAAGAAAGCAAAAGCAGAAGCUAAACGGAAGGAGCAAGAAGCUAAAGAAAAACAAAGACAAGCUGAAUUAGAAGCUGCUCGGUUAGCUAAGGAGAAAGAAGAGGAGGAAGUCAGACAGCAAGCAUUGCUGGCAAAGAAGGAAAAAGAUAUCCAGAAAAAAGCCAUUAAGAAGGAAAGGCAAAAACUUCGAAACUCAUGCAAGUCGUGAUGAGAGGAGAUGGAUUGAAAAGCAGAACAGAGCAACAAGAGCAC circ
ENSG00000105821:-:7:103321931:103322794 ENSG00000105821 ENST00000379263 - 7 103321932 103322794 22 ACUCAUGCAAGUCGUGAUGAGA bsj
ENSG00000105821:-:7:103321931:103322794 ENSG00000105821 ENST00000379263 - 7 103322785 103322994 210 UCACGCCAUUGCACUCCAGCCUGGGCGACAAGAGCAAAAGUCUGUCUCAAAAAAAAAAAAAUCAUUGUUUAAUGUUAGUAAUGACACAGCAUUUUAACCUCUAGGAUGUUAUGUACAUAUAAAUAUUUUAUAAAAUAUUGCAUUUUCCAGUCAUAGCAUCUAUAAGCAGUAGUUUGUUUCCAAUAUUUUCUAUUUUAUAGUCGUGAUGAG ie_up
ENSG00000105821:-:7:103321931:103322794 ENSG00000105821 ENST00000379263 - 7 103321732 103321941 210 CUCAUGCAAGGUAUAUCAGACUGAACAAACACUAGGCACAAGUAAAUCAAGUUGCUUAUUAAGCAAAAAUACUUCUUUUUGUUUGUUUGUUUUUUAGAUGGGGUCUCGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCAGUUCACCGCAAUUUCCGCCUCCGGGUUCGAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 7 688 0.021978022 0.0009985015 4.460153 AAGAAG AAGAAG
PABPC4 9 1251 0.027472527 0.0018144033 3.920423 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPM 6 999 0.019230769 0.0014492040 3.730084 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SART3 16 2634 0.046703297 0.0038186524 3.612389 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IGHMBP2 4 813 0.013736264 0.0011796520 3.541556 AAAAAA AAAAAA
TRA2B 41 7329 0.115384615 0.0106226650 3.441233 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPN1 6 1222 0.019230769 0.0017723764 3.439660 AAAAGA,AGAAGA AAAAGA,AGAAGA
TRA2A 38 6871 0.107142857 0.0099589296 3.427401 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPAB 8 1782 0.024725275 0.0025839306 3.258347 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SRSF4 17 3740 0.049450549 0.0054214720 3.189230 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPA0 1 453 0.005494505 0.0006579386 3.061965 AGAUAU AAUUUA,AGAUAU,AGUAGG
PABPC5 9 2400 0.027472527 0.0034795387 2.981022 AGAAAA,AGAAAG,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMY1A1 1 489 0.005494505 0.0007101099 2.951875 ACAAGA ACAAGA,CAAGAC
RBMX 18 4925 0.052197802 0.0071387787 2.870240 AAGAAG,AAGGAA,AGAAGG,AGGAAG,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PABPC1 16 4443 0.046703297 0.0064402624 2.858333 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM6 3 1054 0.010989011 0.0015289102 2.845486 AUCCAA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA3 7 2140 0.021978022 0.0031027457 2.824444 AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
SRSF10 46 13860 0.129120879 0.0200874160 2.684358 AAAAGA,AAAGAA,AAAGAC,AAGAAA,AAGAAG,AAGACA,AAGAGG,AAGGAA,AAGGAG,ACAAAG,AGACAA,AGAGGA,CAAAGA,GAAAGA,GAGAAA,GAGAGG,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPA2B1 28 8607 0.079670330 0.0124747476 2.675032 AAGAAG,AAGGAA,AAGGAG,AGAAGC,AGAUAU,AGGAGC,CAAGAA,CAAGGA,CCAAGA,CCAAGG,GAAGGA,GCCAAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
NONO 4 1498 0.013736264 0.0021723567 2.660657 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC3 3 1234 0.010989011 0.0017897669 2.618218 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SYNCRIP 4 1634 0.013736264 0.0023694485 2.535366 AAAAAA AAAAAA,UUUUUU
AGO2 4 1830 0.013736264 0.0026534924 2.372025 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPU 4 1965 0.013736264 0.0028491350 2.269394 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
G3BP2 3 1644 0.010989011 0.0023839405 2.204641 AGGAUA,GGAUAA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 2 1237 0.008241758 0.0017941145 2.199680 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SRSF5 19 8869 0.054945055 0.0128544391 2.095723 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA,UACAGC,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
ZFP36 63 28400 0.175824176 0.0411588414 2.094859 AAAAAA,AAAAAC,AAAAAG,AAAACA,AAAAGA,AAAAGC,AAAAGU,AAACAA,AAAGAA,AAAGCA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAUAAG,ACAAAG,ACAAGC,AGAAAG,AGCAAA,AGGAAA,CAAAGA,CAAGCA,CAAGGA,GCAAAG,GGAAAG,UAAAGA,UAAGGA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
RBM5 14 6879 0.041208791 0.0099705232 2.047211 AAAAAA,AAGGAA,AAGGAG,CAAGGA,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPD 5 2837 0.016483516 0.0041128408 2.002817 AAAAAA,AGAUAU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ENOX1 5 3195 0.016483516 0.0046316558 1.831424 AAGACA,AGACAG,AUACAG,CAGACA,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
DAZAP1 10 5964 0.030219780 0.0086445016 1.805638 AAAAAA,AGAUAU,AGGAAA,AGGAAG,AGGAUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
MSI1 4 2770 0.013736264 0.0040157442 1.774250 AGGAAG,AGGAGG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
KHDRBS2 2 1858 0.008241758 0.0026940701 1.613165 AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPA1 27 18070 0.076923077 0.0261885646 1.554479 AAAAAA,AAGAGG,AAGGAG,AGAGGA,AGAUAU,AGGAAG,AGGAGC,AUUAGA,CAAAGA,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GCCAAG,GGAAGG,GGAGGA,GGUUAG AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
SRSF7 21 14481 0.060439560 0.0209873716 1.525972 AAGAAG,AGAAGA,AGAGGA,AGGAAG,GAAGAA,GAGGAA,GAUUGA,GGAAGG,UGAGAG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
FXR2 4 3434 0.013736264 0.0049780156 1.464347 AGACAA,AGACAG,GACAAG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
IGF2BP3 6 4815 0.019230769 0.0069793662 1.462249 AAAAAC,AAAACA,AAACUC,AACUCA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
RBM3 2 2152 0.008241758 0.0031201361 1.401343 AAAACU,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
LIN28A 5 4315 0.016483516 0.0062547643 1.397997 AGGAGA,GGAGAA,GGAGAU,GGAGGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
FUS 4 3648 0.013736264 0.0052881452 1.377156 AAAAAA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZCRB1 1 1605 0.005494505 0.0023274215 1.239257 GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF9 23 20254 0.065934066 0.0293536261 1.167485 AGGAAA,AGGAGA,AGGAGC,AUGAAC,AUGAGA,GAAGCA,GAAGGA,GAUGGA,GGAAAA,GGAAAG,GGAAGG,GGAGAA,GGAGCA,GGAGGA,UGAAAA,UGAACA,UGACAA,UGAGAG,UGGAUU AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG
FMR1 22 20291 0.063186813 0.0294072466 1.103452 AAAAAA,AAGGAA,AAGGAG,AAGGAU,AGGAAG,AGGAGG,CAGCUG,CUAAGG,GAAGGA,GACAAG,GCUAAG,UAAGGA,UGACAA AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
SFPQ 26 24050 0.074175824 0.0348548043 1.089592 AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AGAGGA,CUAAGG,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGAGG,GAGGAA,GGAAGA,GGAGGA,GUGAUG,UAAGGA,UAGUUG,UUAGUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
IGHMBP2 8 350 0.021428571 0.0017684401 3.598986 AAAAAA AAAAAA
ZC3H10 2 140 0.007142857 0.0007103990 3.329800 CGAGCG,GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
PABPC4 8 462 0.021428571 0.0023327287 3.199445 AAAAAA AAAAAA,AAAAAG
SNRPB2 4 288 0.011904762 0.0014560661 3.031391 AUUGCA,UAUUGC,UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
AGO2 8 677 0.021428571 0.0034159613 2.649172 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AAUCAA,AUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SART3 8 777 0.021428571 0.0039197904 2.450687 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SYNCRIP 9 1041 0.023809524 0.0052498992 2.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAAAU,GUACAU,GUAUAU,UAAAUA,UACAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGU,GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPU 9 1136 0.023809524 0.0057285369 2.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PABPC1 10 1321 0.026190476 0.0066606207 1.975314 AAAAAA,ACAAAC,CAAACA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACAAAC,ACCGCA,CAAACA,CACCGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PUM1 13 2172 0.033333333 0.0109482064 1.606271 AAUAUU,AAUGUU,GUAAAU,GUACAU,GUAUAU,UAAAUA,UAAUGU,UACAUA,UGUACA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
CELF1 6 1097 0.016666667 0.0055320435 1.591081 CUGUCU,GUUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
IGF2BP3 7 1348 0.019047619 0.0067966546 1.486714 AAAAUC,AAACAC,AAAUAC,AAAUCA,ACAAAC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
FUS 9 1711 0.023809524 0.0086255542 1.464850 AAAAAA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
DAZAP1 15 2878 0.038095238 0.0145052398 1.393037 AAAAAA,AGGAUG,AGUAAA,AGUUUG,UAGGAU,UAGUAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 AAAAAA,UAUUUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 CAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAGUUU,UAUUUU,UGUUUU,UUGUUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SNRPA 9 1947 0.023809524 0.0098145909 1.278539 AGCAGU,AGUAGU,AUUGCA,CAGUAG,GCAGUA,GUUUCC,UCCUGC,UUGCAC ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAA,AAAAAU,AAAAUA,AAAUAU,AAUAUU,AUAAAA,AUAAAU,AUAUAA,AUAUUU,AUUUUA,UAAAAU,UAAAUA,UAUAAA,UAUUAA,UAUUUU,UUAUAA,UUAUUA,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAA,AAUCAU,AUCAAG,AUCAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
QKI 3 904 0.009523810 0.0045596534 1.062615 AAUCAU,ACACUA,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAAAAA,AAGGUA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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