ENSG00000132356:-:5:40764513:40777586

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000132356:-:5:40764513:40777586 ENSG00000132356 ENST00000397128 - 5 40764514 40777586 1308 UUGGCAAACAUGAAUUGACUGGGCAUAAAGUAGCUGUGAAGAUACUCAAUCGACAGAAGAUUCGGAGCCUUGAUGUGGUAGGAAAAAUCCGCAGAGAAAUUCAGAACCUCAAGCUUUUCAGGCAUCCUCAUAUAAUUAAACUGUACCAGGUCAUCAGUACACCAUCUGAUAUUUUCAUGGUGAUGGAAUAUGUCUCAGGAGGAGAGCUAUUUGAUUAUAUCUGUAAGAAUGGAAGGCUGGAUGAAAAAGAAAGUCGGCGUCUGUUCCAACAGAUCCUUUCUGGUGUGGAUUAUUGUCACAGGCAUAUGGUGGUCCAUAGAGAUUUGAAACCUGAAAAUGUCCUGCUUGAUGCACACAUGAAUGCAAAGAUAGCUGAUUUUGGUCUUUCAAACAUGAUGUCAGAUGGUGAAUUUUUAAGAACAAGUUGUGGCUCACCCAACUAUGCUGCACCAGAAGUAAUUUCAGGAAGAUUGUAUGCAGGCCCAGAGGUAGAUAUAUGGAGCAGUGGGGUUAUUCUCUAUGCUUUAUUAUGUGGAACCCUUCCAUUUGAUGAUGACCAUGUGCCAACUCUUUUUAAGAAGAUAUGUGAUGGGAUCUUCUAUACCCCUCAAUAUUUAAAUCCUUCUGUGAUUAGCCUUUUGAAACAUAUGCUGCAGGUGGAUCCCAUGAAGAGGGCCACAAUCAAAGAUAUCAGGGAACAUGAAUGGUUUAAACAGGACCUUCCAAAAUAUCUCUUUCCUGAGGAUCCAUCAUAUAGUUCAACCAUGAUUGAUGAUGAAGCCUUAAAAGAAGUAUGUGAAAAGUUUGAGUGCUCAGAAGAGGAAGUUCUCAGCUGUCUUUACAACAGAAAUCACCAGGAUCCUUUGGCAGUUGCCUACCAUCUCAUAAUAGAUAACAGGAGAAUAAUGAAUGAAGCCAAAGAUUUCUAUUUGGCGACAAGCCCACCUGAUUCUUUUCUUGAUGAUCAUCACCUGACUCGGCCCCAUCCUGAAAGAGUACCAUUCUUGGUUGCUGAAACACCAAGGGCACGCCAUACCCUUGAUGAAUUAAAUCCACAGAAAUCCAAACACCAAGGUGUAAGGAAAGCAAAAUGGCAUUUAGGAAUUAGAAGUCAAAGUCGACCAAAUGAUAUUAUGGCAGAAGUAUGUAGAGCAAUCAAACAAUUGGAUUAUGAAUGGAAGGUUGUAAACCCAUAUUAUUUGCGUGUACGAAGGAAGAAUCCUGUGACAAGCACUUACUCCAAAAUGAGUCUACAGUUAUACCAAGUGGAUAGUAGAACUUAUCUACUGGAUUUCCGUAGUAUUGAUGUUGGCAAACAUGAAUUGACUGGGCAUAAAGUAGCUGUGAAGAUACUCAAU circ
ENSG00000132356:-:5:40764513:40777586 ENSG00000132356 ENST00000397128 - 5 40764514 40777586 22 UAGUAUUGAUGUUGGCAAACAU bsj
ENSG00000132356:-:5:40764513:40777586 ENSG00000132356 ENST00000397128 - 5 40777577 40777786 210 AUUUUUGUAUUUUUUAGUAGAGAUGGGGUUUUGCCAUGUUGGCCAGAUUGGUUUCGAACUCCUGACCUCAAGUGAUCUACUCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACUGCACCGGGCCAGAAUAUGUGUAAAUAUAUUAUUAAUCAUACUUAGUACUAAUUUAUUAAAUUACUUCUUUUACAGUUGGCAAACA ie_up
ENSG00000132356:-:5:40764513:40777586 ENSG00000132356 ENST00000397128 - 5 40764314 40764523 210 AGUAUUGAUGGUAUGUACAUCACACAAAACAACAUAGAUUAGACCUUGUUACUAACUUGGUAUUUUACGCCUUGAUUCUUUUGAGGCUUCUUGACUUGUUCCUAGUAAUUCAACUGCAAAGGAAUAAAAAAUGUGAUUUCUUGUGCCUUUGCAAUAUUAACAUUUAUGAAUCUUAUUUUUCUUGUAAUCUUAUAGCAUAUUGUCCUUUUA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001529052 0.0001130379 3.757759 GCAUAA GCAUAA
HNRNPA0 3 453 0.003058104 0.0006579386 2.216613 AGAUAU AAUUUA,AGAUAU,AGUAGG
AGO1 3 548 0.003058104 0.0007956130 1.942499 AGGUAG,GAGGUA,GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
NXF1 1 286 0.001529052 0.0004159215 1.878254 AACCUG AACCUG
RBM46 30 4554 0.023700306 0.0066011240 1.844122 AAUCAA,AAUGAA,AAUGAU,AUCAAA,AUCAUA,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CNOT4 1 314 0.001529052 0.0004564992 1.743953 GACAGA GACAGA
ERI1 3 632 0.003058104 0.0009173461 1.737099 UUCAGA,UUUCAG UUCAGA,UUUCAG
ZCRB1 9 1605 0.007645260 0.0023274215 1.715833 AAUUAA,AUUUAA,GAAUUA,GGAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBMS1 2 497 0.002293578 0.0007217036 1.668122 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPN1 5 1222 0.004587156 0.0017723764 1.371915 AAAAGA,AGAAGA AAAAGA,AGAAGA
AKAP1 1 426 0.001529052 0.0006188101 1.305069 AUAUAU AUAUAU,UAUAUA
RBMS3 5 1283 0.004587156 0.0018607779 1.301694 AUAUAG,AUAUAU,CAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TUT1 2 678 0.002293578 0.0009840095 1.220856 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX2 1 452 0.001529052 0.0006564894 1.219794 UGACUG UGACUG,UGCAUG
SRSF11 2 688 0.002293578 0.0009985015 1.199763 AAGAAG AAGAAG
TARDBP 10 2654 0.008409786 0.0038476365 1.128097 GAAUGA,GAAUGG,GUGAAU,GUUGUG,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPM 3 999 0.003058104 0.0014492040 1.077377 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TRA2B 27 7329 0.021406728 0.0106226650 1.010919 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM6 3 1054 0.003058104 0.0015289102 1.000134 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZNF638 1 12 0.09090909 0.000851454 6.738352 UGUUGG CGUUCG,CGUUCU,CGUUGG,GGUUCU,GGUUGG,GUUCUU,GUUGGU,UGUUCU,UGUUGG,UGUUGU
SFPQ 1 153 0.09090909 0.010086455 3.172005 UGAUGU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF2 1 479 0.09090909 0.031438302 1.531901 GUUGGC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 4 216 0.011904762 0.001093309 3.444765 AAUCUU,AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 3 263 0.009523810 0.001330109 2.839994 AACAAC,ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
QKI 9 904 0.023809524 0.004559653 2.384543 AAUCAU,ACUAAC,ACUAAU,AUCAUA,AUCUAC,AUUAAC,CUACUC,UAAUCA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
HNRNPLL 6 748 0.016666667 0.003773680 2.142922 ACUGCA,CAAACA,CACACA,CACUGC,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
PUM2 6 764 0.016666667 0.003854293 2.112428 GUAAAU,GUACAU,UAAAUA,UACAUC,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
AKAP1 1 221 0.004761905 0.001118501 2.089973 AUAUAU AUAUAU,UAUAUA
HNRNPM 1 222 0.004761905 0.001123539 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
SNRNP70 1 253 0.004761905 0.001279726 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
AGO2 4 677 0.011904762 0.003415961 1.801175 AAAAAA,AAAGUG,AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBMS3 3 562 0.009523810 0.002836558 1.747397 AAUAUA,AUAUAU,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBFOX1 1 287 0.004761905 0.001451028 1.714464 GCAUGA AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 1 288 0.004761905 0.001456066 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ZFP36L2 4 774 0.011904762 0.003904676 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.001566909 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBM41 2 502 0.007142857 0.002534260 1.494937 AUACUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.001718057 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGHMBP2 1 350 0.004761905 0.001768440 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PUM1 11 2172 0.028571429 0.010948206 1.383879 AAUAUU,CAGAAU,CCAGAA,CUUGUA,GUAAAU,GUACAU,UAAAUA,UACAUC,UGUAAA,UGUAAU,UGUACA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM4 5 1094 0.014285714 0.005516929 1.372636 CUUCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SF1 6 1294 0.016666667 0.006524587 1.353007 ACUAAC,ACUAAU,AUUAAC,UACUAA,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ELAVL3 9 1928 0.023809524 0.009718863 1.292679 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TARDBP 4 1034 0.011904762 0.005214631 1.190902 GUUUUG,UUGUGC,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPD 6 1488 0.016666667 0.007502015 1.151615 AAAAAA,AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
CELF2 3 881 0.009523810 0.004443773 1.099754 AUGUGU,GUAUGU,UAUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ELAVL1 14 3309 0.035714286 0.016676743 1.098664 AUUUAU,UAUUUU,UGAUUU,UGGUUU,UUAUUU,UUGAUU,UUGGUU,UUUAGU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL2 43 9826 0.104761905 0.049511286 1.081285 AAUUUA,AUACUU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,CUUAUA,CUUUUA,GUAUUG,UAAUUU,UAUAUU,UAUUAU,UAUUGA,UAUUGU,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUACUU,UUAUUU,UUCUUU,UUGAUU,UUGUAU,UUUAGU,UUUAUG,UUUAUU,UUUCUU,UUUUAG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL4 12 2916 0.030952381 0.014696695 1.074559 AAAAAA,AUUUAU,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PPIE 40 9262 0.097619048 0.046669690 1.064677 AAAAAA,AAAAAU,AAAUAU,AAAUUA,AAUAAA,AAUAUA,AAUAUU,AAUUUA,AUAAAA,AUAUAU,AUAUUA,AUUAAA,AUUAAU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAUA,UAAAUU,UAAUUU,UAUAUU,UAUUAA,UAUUAU,UAUUUU,UUAAAU,UUAUUA,UUAUUU,UUUAUU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPCL1 5 1381 0.014285714 0.006962918 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC4 1 462 0.004761905 0.002332729 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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