ENSG00000198604:-:14:34792774:34862322

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198604:-:14:34792774:34862322 ENSG00000198604 ENST00000360310 - 14 34792775 34862322 1397 UGACUUUUUUGAACGAACCAUUCUGUGCAACAGCCUUGUGUGGAGUUGUGCUGUGACGGGUAGACCUGGACUGACGUAUCAGGAAGCACUUGAGUCAGAAAAAAAAGCAAGACAGAAUCUUCAGAGUUUUCCAGAACCACUAAUUAUUCCAGUUUUAUACUUGACCAGCCUUACCCAUCGUUCGCGCUUACAUGAAAUUUGUGAUGAUAUCUUUGCAUAUGUCAAGGAUCGAUAUUUUGUCGAAGAAACUGUGGAAGUCAUUAGGAACAAUGGUGCAAGGUUGCAGUGUAGGAUUUUGGAAGUCCUCCCUCCAUCACAUCAAAAUGGUUUUGCUAAUGGACAUGUUAACAGUGUGGAUGGAGAAACUAUUAUCAUCAGUGAUAGUGAUGAUUCAGAAACACAAAGCUGUUCUUUUCAAAAUGGGAAGAAAAAAGAUGCAAUUGAUCCCUUACUAUUCAAGUAUAAAGUGCAACCCACUAAAAAAGAAUUACAUGAGUCUGCUAUUGUUAAAGCAACACAAAUCAGCCGGAGAAAACACCUAUUUUCUCGUGAUAAACUAAAGCUUUUUCUGAAGCAACACUGUGAACCACAAGAUGGAGUCAUUAAAAUAAAGGCAUCAUCUCUUUCAACGUAUAAAAUAGCAGAACAAGAUUUUUCUUAUUUCUUCCCUGAUGAUCCACCCACAUUUAUCUUCAGUCCUGCUAACAGACGAAGAGGGAGACCUCCCAAACGAAUACAUAUUAGUCAAGAGGACAAUGUUGCUAAUAAACAGACUCUUGCAAGUUAUAGGAGCAAAGCUACUAAAGAAAGAGAUAAACUUUUGAAACAAGAAGAAAUGAAGUCACUGGCUUUUGAAAAGGCUAAAUUAAAAAGAGAAAAAGCAGAUGCCCUAGAAGCGAAGAAAAAAGAAAAAGAAGAUAAAGAGAAAAAGAGGGAAGAAUUGAAAAAAAUUGUUGAAGAAGAGAGACUAAAGAAAAAAGAAGAAAAAGAGAGGCUUAAAGUAGAAAGAGAAAAGGAAAGAGAGAAGUUACGUGAAGAAAAGCGAAAGUAUGUGGAAUACUUAAAACAGUGGAGUAAACCUAGAGAAGAUAUGGAAUGUGAUGACCUUAAGGAACUUCCAGAACCAACACCAGUGAAAACUAGACUACCUCCUGAAAUCUUUGGUGAUGCUCUGAUGGUUUUGGAGUUCCUUAAUGCAUUUGGGGAACUUUUUGAUCUUCAAGAUGAGUUUCCUGAUGGAGUAACCCUAGAAGUAUUAGAGGAAGCUCUUGUAGGAAAUGACAGUGAAGGCCCACUGUGUGAAUUGCUUUUUUUCUUCCUGACUGCAAUCUUCCAGGCAAUAGCUGAAGAAGAAGAGGAAGUAGCCAAAGAGCAACUAACUGAUGCUGACACCAAAGUGACUUUUUUGAACGAACCAUUCUGUGCAACAGCCUUGUGUGGAGUUGUG circ
ENSG00000198604:-:14:34792774:34862322 ENSG00000198604 ENST00000360310 - 14 34792775 34862322 22 UGACACCAAAGUGACUUUUUUG bsj
ENSG00000198604:-:14:34792774:34862322 ENSG00000198604 ENST00000360310 - 14 34862313 34862522 210 AUUUAGUUUAAAUAUACUUUUUCUUAUGUUUGUAUUAAUGUUAUAAGUUGACCAGUUACCAAACCCUUGAGUUCUGUGAGUCUACAUAAAAUUUUGCAUUAAAGGCACAAAAAUAACCUGAUAAUGCUAUCAGUUUUUAAUGUAAAAUUUGUGAAAUGAUAGGUAAUGGGCUUUUGUUUUUGUUUUUGUUUUUUAAUCAGUGACUUUUUU ie_up
ENSG00000198604:-:14:34792774:34862322 ENSG00000198604 ENST00000360310 - 14 34792575 34792784 210 GACACCAAAGGUCAGAGUUCAACAUUAUUGCUGAUUGAACCAUAGUAGUUUUGUAGCGAAACUAAUUUUUGAGGGCCAAUUUUAAGUUAAAUUGGCUUUUAUGCUUAUAAAAUAUAGUUGUUCAGGUUACCUGAUGUUGAAUCAUAUGCUAACAACAAAUGGAUUAUGUUACAAAAAUUUUGUUUUGAUAUAACCUGUGUCUGACAACCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC4 19 1251 0.014316392 0.0018144033 2.980101 AAAAAA,AAAAAG AAAAAA,AAAAAG
PABPN1 15 1222 0.011453114 0.0017723764 2.691983 AAAAGA,AGAAGA AAAAGA,AGAAGA
IGHMBP2 9 813 0.007158196 0.0011796520 2.601235 AAAAAA AAAAAA
SART3 31 2634 0.022906228 0.0038186524 2.584604 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ANKHD1 3 339 0.002863278 0.0004927293 2.538801 AGACGA,GACGAA,GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBMY1A1 4 489 0.003579098 0.0007101099 2.333482 ACAAGA,CAAGAC ACAAGA,CAAGAC
SRSF11 6 688 0.005010737 0.0009985015 2.327186 AAGAAG AAGAAG
PABPC1 41 4443 0.030064424 0.0064402624 2.222866 AAAAAA,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAAUC,CGAACC,CGAAUA,CUAACA,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 58 6871 0.042233357 0.0099589296 2.084320 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF4 30 3740 0.022190408 0.0054214720 2.033180 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
AGO2 14 1830 0.010737294 0.0026534924 2.016666 AAAAAA,AAAGUG,AAGUGC,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SYNCRIP 12 1634 0.009305655 0.0023694485 1.973556 AAAAAA,UUUUUU AAAAAA,UUUUUU
RBM42 2 407 0.002147459 0.0005912752 1.860729 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PABPC5 16 2400 0.012168933 0.0034795387 1.806235 AGAAAA,AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
KHDRBS2 12 1858 0.009305655 0.0026940701 1.788320 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM41 8 1318 0.006442377 0.0019115000 1.752888 AUACAU,AUACUU,UACAUG,UACUUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPU 12 1965 0.009305655 0.0028491350 1.707584 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 21 3429 0.015748031 0.0049707696 1.663630 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CNOT4 1 314 0.001431639 0.0004564992 1.648984 GACAGA GACAGA
SRSF10 86 13860 0.062276306 0.0200874160 1.632391 AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,ACAAAG,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GAGAAA,GAGAAG,GAGACC,GAGAGA,GAGAGG,GAGGAA,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBM28 4 822 0.003579098 0.0011926949 1.585371 AGUAGA,GUGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM3 12 2152 0.009305655 0.0031201361 1.576499 AAAACU,AAACGA,AAACUA,AAUACU,AGACGA,AGACUA,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
NONO 8 1498 0.006442377 0.0021723567 1.568332 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2B 42 7329 0.030780243 0.0106226650 1.534859 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RALY 8 1553 0.006442377 0.0022520629 1.516346 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ACO1 6 1283 0.005010737 0.0018607779 1.429117 CAGUGA,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
U2AF2 7 1477 0.005726557 0.0021419234 1.418761 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
MATR3 3 739 0.002863278 0.0010724109 1.416810 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPCL1 10 2062 0.007874016 0.0029897078 1.397095 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPD 14 2837 0.010737294 0.0041128408 1.384423 AAAAAA,AGAUAU,AUUUAU,UUAGAG,UUAGGA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
CPEB4 3 821 0.002863278 0.0011912456 1.265197 UUUUUU UUUUUU
DDX19B 3 821 0.002863278 0.0011912456 1.265197 UUUUUU UUUUUU
EIF4A3 3 821 0.002863278 0.0011912456 1.265197 UUUUUU UUUUUU
FXR1 1 411 0.001431639 0.0005970720 1.261691 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
ERI1 2 632 0.002147459 0.0009173461 1.227092 UUCAGA UUCAGA,UUUCAG
SRSF5 39 8869 0.028632785 0.0128544391 1.155401 AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAUA,UGCAUA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
RBFOX2 1 452 0.001431639 0.0006564894 1.124824 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.001431639 0.0006579386 1.121643 AGAUAU AAUUUA,AGAUAU,AGUAGG
DAZAP1 25 5964 0.018611310 0.0086445016 1.106325 AAAAAA,AGAUAU,AGGAAA,AGGAAG,AGGUUG,AGUAAA,AGUAUA,AGUAUG,UAGGAA,UAGGAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
SRSF7 61 14481 0.044380816 0.0209873716 1.080415 AAAGGA,AAGAAG,ACGAAU,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGGAAG,AGGACA,AUUGAU,CUAGAG,GAAGAA,GAAGGC,GACUAC,GAGACU,GAGAGA,GAGGAA,GGACAA,UAGAGA,UCUUCA,UGGACA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
KHDRBS1 16 4064 0.012168933 0.0058910141 1.046615 AUAAAA,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ZFP36 114 28400 0.082319256 0.0411588414 1.000028 AAAAAA,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAUAAA,ACAAAG,ACAAAU,ACCUCC,ACUUCC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUUUAU,CAAAGA,CAAGGA,CAAGUA,CCCUCC,CCUUGU,GCAAAG,GGAAAG,UAAACA,UAAAGA,UAAGGA,UCCUCC,UCCUGC,UCUUCC,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUUAUA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AGO2 1 10 0.09090909 0.0007204611 6.979360 AAAGUG AAAAAA,AAAGUG,UAAAGU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 AGUGAC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 2 43 0.007142857 0.0002216848 5.009919 AACCUG AACCUG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBMS1 3 217 0.009523810 0.0010983474 3.116204 AUAUAC,AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAAC,ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
QKI 8 904 0.021428571 0.0045596534 2.232540 AAUCAU,ACUAAU,AUCAUA,CUAACA,UAACCU,UAAUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
SSB 4 505 0.011904762 0.0025493753 2.223323 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TIAL1 39 5597 0.095238095 0.0282043531 1.755621 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UCAGUU,UUAAAU,UUUAAA,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AAUAUA,AUAUAG AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ELAVL1 21 3309 0.052380952 0.0166767432 1.651205 UAGUUU,UGUUUU,UUAGUU,UUGUUU,UUUAGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SF1 7 1294 0.019047619 0.0065245869 1.545652 ACUAAU,CUAACA,GCUAAC,UAACAA,UAUACU,UGCUAA,UGCUGA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUGUU,ACAUAA,UAAAUA,UAAUGU,UACAUA,UGUAAA,UUAAUG,UUGUAG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GUUGUU,GUUUUG,UUGUUC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TIA1 28 5140 0.069047619 0.0259018541 1.414536 AUUUUG,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUG,GUUUUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 54 9826 0.130952381 0.0495112858 1.403213 AAUUUG,AAUUUU,AUACUU,AUUAUU,AUUUAG,AUUUUA,AUUUUG,AUUUUU,CUUAUA,CUUUUA,CUUUUU,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAUACU,UAUGUU,UCUUAU,UGUAUU,UUAAGU,UUAGUU,UUAUGU,UUAUUG,UUGUAU,UUUAAG,UUUAAU,UUUAGU,UUUAUG,UUUCUU,UUUGAU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PPIE 50 9262 0.121428571 0.0466696896 1.379550 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUU,AAUAUA,AAUUUU,AUAAAA,AUAUAA,AUUAAA,AUUAAU,AUUAUU,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAAUU,UAAUUU,UAUAAA,UAUUAA,UUAAAU,UUAUAA,UUUAAA,UUUAAU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 UAAAUA,UACAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,AACAAA,ACACCA,ACAUAA,CACAAA,CAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AUAAAA,AUUAAA,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AAUGAU,AUCAUA,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUUGUU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GGAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home