circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000234545:-:7:92569822:92581603
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000234545:-:7:92569822:92581603 | ENSG00000234545 | ENST00000438306 | - | 7 | 92569823 | 92581603 | 585 | GCCUAUAUGAACCCAAUAGCAAUGGCGAGAUCAAGGGGUCCAAUCCAGUCUUCAGGGCCAACAAUACAGGAUUAUCUGAAUCGACCAAGGCCUACCUGGGAAGAAGUAAAAGAGCAACUAGAAAAGAAAAAGAAAGGCUCCAAGGCUUUGGCUGAAUUUGAAGAAAAAAUGAAUGAGAACUGGAAGAAAGAACUGGAAAAACACAGGGAGAAAUUGUUAAGUGGAAGUGAGAGCUCAUCCAAAAAAAGACAGAGAAAGAAAAAAGAAAAGAAGAAAUCUGGUAGGUAUUCAUCUUCUUCUUCAUCAAGCUCUGAUUCUUCCAGCAGUUCUUCUGAUUCUGAAGAUGAGGAUAAGAAACAAGGAAAACGGAGAAAGAAAAAGAAGAACCGUUCACAUAAAUCUUCUGAAAGCUCCAUGUCAGAAACUGAAUCAGACAGUAAGGAUAGUUUAAAAAAGAAAAAGAAGUCAAAAGAUGGAACUGAGAAAGAAAAGGAUAUUAAAGGACUCAGCAAAAAGAGAAAGAUGUAUUCUGAAGAUAAACCUUUAUCAUCUGAGUCCUUGUCAGAAUCAGAGUAUAUUGAGGAGGCCUAUAUGAACCCAAUAGCAAUGGCGAGAUCAAGGGGUCCAAUCCAGUC | circ |
| ENSG00000234545:-:7:92569822:92581603 | ENSG00000234545 | ENST00000438306 | - | 7 | 92569823 | 92581603 | 22 | AUAUUGAGGAGGCCUAUAUGAA | bsj |
| ENSG00000234545:-:7:92569822:92581603 | ENSG00000234545 | ENST00000438306 | - | 7 | 92581594 | 92581803 | 210 | ACACACACAAUUUUCUCCCAAACUUUUAAGACUUAAAAGAGGAUUAAAUUAAUUUUUUUAGAAUAAAGAGUUGGUUAGUCAGAUUGCAUAUACUUAGCUGGAUAUAUUAUGCAUUUAUAGUAAAGAUUACUUGAUGAGUAAGUGAGGUUUUGCAUGUUUAAUGAUUGCUUUAAUGGAUUAAUUGUUGUUCUUUCCCCAAGGCCUAUAUGA | ie_up |
| ENSG00000234545:-:7:92569822:92581603 | ENSG00000234545 | ENST00000438306 | - | 7 | 92569623 | 92569832 | 210 | UAUUGAGGAGGUAAGUAUAUGAUCAAAUCCAUUUUCUCUAUUUUAAAAUGCUUAGUUAUUGAUUUAAUAAAUAUGACUUAGAAAAAGAAAUACUUCAUAUUUAAUUUAUUCACCUUUCUAGUAUGAAAAAACAAAAUGAAAGUUAUUUCAUUUCAGAAUGAGUUUUGCUUUUUUCCAGAAGAUAAUUAUCUAUUAUUUUUUAUAAUUAAC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| PABPN1 | 13 | 1222 | 0.023931624 | 0.0017723764 | 3.755161 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| PABPC4 | 12 | 1251 | 0.022222222 | 0.0018144033 | 3.614436 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| SART3 | 21 | 2634 | 0.037606838 | 0.0038186524 | 3.299859 | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| PABPC5 | 17 | 2400 | 0.030769231 | 0.0034795387 | 3.144520 | AGAAAA,AGAAAG,AGAAAU,GAAAUU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| IGHMBP2 | 5 | 813 | 0.010256410 | 0.0011796520 | 3.120093 | AAAAAA | AAAAAA |
| SRSF11 | 4 | 688 | 0.008547009 | 0.0009985015 | 3.097583 | AAGAAG | AAGAAG |
| TRA2A | 44 | 6871 | 0.076923077 | 0.0099589296 | 2.949354 | AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,GAAAGA,GAAGAA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| CNOT4 | 1 | 314 | 0.003418803 | 0.0004564992 | 2.904807 | GACAGA | GACAGA |
| PABPC1 | 21 | 4443 | 0.037606838 | 0.0064402624 | 2.545804 | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| G3BP2 | 7 | 1644 | 0.013675214 | 0.0023839405 | 2.520143 | AGGAUA,AGGAUU,GGAUAA,GGAUAG,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| RBM6 | 4 | 1054 | 0.008547009 | 0.0015289102 | 2.482916 | AAUCCA,AUCCAA,AUCCAG,CAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| TRA2B | 33 | 7329 | 0.058119658 | 0.0106226650 | 2.451880 | AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGGAAA,AUAAGA,GAAAGA,GAAGAA,UAAGAA | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| SRSF10 | 61 | 13860 | 0.105982906 | 0.0200874160 | 2.399468 | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,AAGGGG,AGAGAA,GAAAGA,GAGAAA,GAGAAC,GAGAGC,GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| MATR3 | 2 | 739 | 0.005128205 | 0.0010724109 | 2.257596 | AAUCUU,CAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| SNRNP70 | 4 | 1237 | 0.008547009 | 0.0017941145 | 2.252148 | AUCAAG,GAUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| SRSF4 | 13 | 3740 | 0.023931624 | 0.0054214720 | 2.142162 | AAGAAG,AGAAGA,GAAGAA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| SYNCRIP | 5 | 1634 | 0.010256410 | 0.0023694485 | 2.113903 | AAAAAA | AAAAAA,UUUUUU |
| AGO2 | 5 | 1830 | 0.010256410 | 0.0026534924 | 1.950562 | AAAAAA | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| PABPC3 | 3 | 1234 | 0.006837607 | 0.0017897669 | 1.933720 | AAAAAC,AAAACA,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| HNRNPU | 5 | 1965 | 0.010256410 | 0.0028491350 | 1.847930 | AAAAAA | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| TUT1 | 1 | 678 | 0.003418803 | 0.0009840095 | 1.796747 | CAAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| ZFP36 | 77 | 28400 | 0.133333333 | 0.0411588414 | 1.695763 | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGG,AAACAA,AAAGAA,AAAGGA,AACAAG,AAGAAA,AAGGAA,AAGUAA,ACAAGG,ACCUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAU,CAAGGA,CCUUGU,UAAGGA,UCUUCC,UCUUCU,UUUAAA | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU |
| DAZAP1 | 15 | 5964 | 0.027350427 | 0.0086445016 | 1.661709 | AAAAAA,AGGAAA,AGGAUA,AGUAAA,AGUAAG,AGUAUA,AGUUUA,UAGGUA,UAGUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| HNRNPAB | 3 | 1782 | 0.006837607 | 0.0025839306 | 1.403924 | AAAGAC,AAGACA,AUAGCA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| ENOX1 | 6 | 3195 | 0.011965812 | 0.0046316558 | 1.369318 | AAGACA,AAUACA,AGACAG,AUACAG,CAGACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| RBM5 | 14 | 6879 | 0.025641026 | 0.0099705232 | 1.362713 | AAAAAA,AAGGAA,AAGGGG,AGGGAG,CAAGGA,CAAGGG,UCUUCU | AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU |
| HNRNPD | 5 | 2837 | 0.010256410 | 0.0041128408 | 1.318319 | AAAAAA | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| HNRNPM | 1 | 999 | 0.003418803 | 0.0014492040 | 1.238231 | AAGGAA | AAGGAA,GAAGGA,GGGGGG |
| HNRNPA3 | 3 | 2140 | 0.006837607 | 0.0031027457 | 1.139946 | CAAGGA,CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| ZCRB1 | 2 | 1605 | 0.005128205 | 0.0023274215 | 1.139721 | GGAUUA,GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| SRSF7 | 26 | 14481 | 0.046153846 | 0.0209873716 | 1.136929 | AAAGGA,AAGAAG,AAGGAC,ACUAGA,AGAAGA,AGAGAA,AGAUCA,CAGAGA,CGAGAU,CUGAGA,GAAGAA,GAAUGA,GAGAUC,UCUUCA,UGAGAG | AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA |
| SRSF5 | 15 | 8869 | 0.027350427 | 0.0128544391 | 1.089297 | AAGAAG,AGAAGA,CACAUA,GAAGAA,GGAAGA,UAAAGG | AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC |
| SRSF3 | 28 | 16536 | 0.049572650 | 0.0239654858 | 1.048586 | AUCAUC,AUCGAC,AUCUUC,AUUCAU,CAGAGA,CAUCAA,CUCCAA,CUUCAG,CUUCAU,CUUCUU,CUUUAU,GAUCAA,UCAGAG,UCAUCA,UCAUCC,UCAUCU,UCUUCA,UCUUCC,UUCAUC,UUCUUC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| MSI1 | 1 | 23 | 0.09090909 | 0.001571915 | 5.853829 | AGGAGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG |
| FMR1 | 1 | 117 | 0.09090909 | 0.007728583 | 3.556149 | AGGAGG | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| SRSF9 | 1 | 134 | 0.09090909 | 0.008842023 | 3.361976 | GGAGGC | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC |
| SRSF1 | 2 | 625 | 0.13636364 | 0.041000786 | 1.733736 | AGGAGG,GGAGGC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | AGGAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| PABPN1 | 3 | 178 | 0.009523810 | 0.0009018541 | 3.400573 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| ZCRB1 | 13 | 666 | 0.033333333 | 0.0033605401 | 3.310201 | AAUUAA,ACUUAA,AUUUAA,GACUUA,GAUUAA,GAUUUA,GGAUUA,GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| A1CF | 10 | 598 | 0.026190476 | 0.0030179363 | 3.117408 | AGUAUA,AUAAUU,UAAUUA,UAAUUG,UGAUCA,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGCAUG | UGACUG,UGCAUG |
| RBMS1 | 2 | 217 | 0.007142857 | 0.0010983474 | 2.701167 | AUAUAC,GAUAUA | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| ERI1 | 2 | 228 | 0.007142857 | 0.0011537686 | 2.630147 | UUCAGA,UUUCAG | UUCAGA,UUUCAG |
| TUT1 | 2 | 230 | 0.007142857 | 0.0011638452 | 2.617602 | AAAUAC,AAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| AGO1 | 2 | 283 | 0.007142857 | 0.0014308746 | 2.319604 | GAGGUA,UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBFOX1 | 2 | 287 | 0.007142857 | 0.0014510278 | 2.299426 | GCAUGU,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| RBM6 | 1 | 191 | 0.004761905 | 0.0009673519 | 2.299426 | AAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AAUUUA | AAUUUA,AGAUAU,AGUAGG |
| RBM41 | 4 | 502 | 0.011904762 | 0.0025342604 | 2.231902 | AUACUU,UACUUG,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| PABPC3 | 2 | 310 | 0.007142857 | 0.0015669085 | 2.188580 | AAAAAC,AAAACA | AAAAAC,AAAACA,AAAACC,GAAAAC |
| ZNF638 | 5 | 646 | 0.014285714 | 0.0032597743 | 2.131729 | GUUCUU,GUUGGU,GUUGUU,UGUUCU,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| ZFP36L2 | 6 | 774 | 0.016666667 | 0.0039046755 | 2.093691 | AUUUAU,UAUUUA,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| AKAP1 | 1 | 221 | 0.004761905 | 0.0011185006 | 2.089973 | AUAUAU | AUAUAU,UAUAUA |
| G3BP2 | 3 | 490 | 0.009523810 | 0.0024738009 | 1.944809 | AGGAUU,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| SNRNP70 | 1 | 253 | 0.004761905 | 0.0012797259 | 1.895704 | GAUCAA | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| HNRNPL | 10 | 1419 | 0.026190476 | 0.0071543732 | 1.872145 | AAACAA,AAAUAC,AACAAA,AAUAAA,ACACAA,ACACAC,CACACA | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| TARDBP | 7 | 1034 | 0.019047619 | 0.0052146312 | 1.868974 | GAAUGA,GUUGUU,GUUUUG,UUGUUC,UUUUGC | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| SART3 | 5 | 777 | 0.014285714 | 0.0039197904 | 1.865725 | AAAAAA,AAAAAC,AGAAAA,GAAAAA | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| PPIE | 70 | 9262 | 0.169047619 | 0.0466696896 | 1.856872 | AAAAAA,AAAUAU,AAAUUA,AAUAAA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUUA,UAAUUU,UAUAAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| RBM46 | 7 | 1091 | 0.019047619 | 0.0055018138 | 1.791631 | AAUGAA,AAUGAU,AUCAAA,AUGAAA,AUGAUU,GAUCAA | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| ELAVL3 | 13 | 1928 | 0.033333333 | 0.0097188634 | 1.778106 | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| CPEB4 | 4 | 691 | 0.011904762 | 0.0034864974 | 1.771688 | UUUUUU | UUUUUU |
| DDX19B | 4 | 691 | 0.011904762 | 0.0034864974 | 1.771688 | UUUUUU | UUUUUU |
| EIF4A3 | 4 | 691 | 0.011904762 | 0.0034864974 | 1.771688 | UUUUUU | UUUUUU |
| RBMS3 | 3 | 562 | 0.009523810 | 0.0028365578 | 1.747397 | AUAUAU,CAUAUA,CUAUAU | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| SNRPB2 | 1 | 288 | 0.004761905 | 0.0014560661 | 1.709463 | AUUGCA | AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG |
| ELAVL2 | 67 | 9826 | 0.161904762 | 0.0495112858 | 1.709316 | AAUUUA,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,UAAUUU,UAGUUA,UAUACU,UAUAUU,UAUUAU,UAUUGA,UAUUUA,UAUUUU,UCAUUU,UGAUUU,UUAAUU,UUACUU,UUAGUU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAAG,UUUAAU,UUUAUA,UUUAUU,UUUCAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PABPC5 | 3 | 596 | 0.009523810 | 0.0030078597 | 1.662801 | AGAAAA,AGAAAU,GAAAGU | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| KHDRBS3 | 10 | 1646 | 0.026190476 | 0.0082980653 | 1.658195 | AAUAAA,AGAUAA,AUAAAG,AUUAAA,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| HNRNPLL | 4 | 748 | 0.011904762 | 0.0037736800 | 1.657495 | ACACAC,CACACA | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| KHDRBS2 | 6 | 1051 | 0.016666667 | 0.0053002821 | 1.652825 | AAUAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| U2AF2 | 6 | 1071 | 0.016666667 | 0.0054010480 | 1.625654 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| PABPC4 | 2 | 462 | 0.007142857 | 0.0023327287 | 1.614483 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| MSI1 | 5 | 961 | 0.014285714 | 0.0048468360 | 1.559458 | AGGAGG,AGUAAG,AGUUGG,UAGUAA,UAGUUA | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| ELAVL4 | 17 | 2916 | 0.042857143 | 0.0146966949 | 1.544044 | AAAAAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| KHDRBS1 | 11 | 1945 | 0.028571429 | 0.0098045143 | 1.543055 | AUUUAA,CAAAAU,UAAAAG,UUAAAA,UUAAAU,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| CPEB2 | 8 | 1487 | 0.021428571 | 0.0074969770 | 1.515155 | AUUUUU,CAUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| HNRNPD | 8 | 1488 | 0.021428571 | 0.0075020153 | 1.514186 | AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| PUM1 | 12 | 2172 | 0.030952381 | 0.0109482064 | 1.499356 | AAUUGU,AGAUAA,CAGAAU,CCAGAA,GUAUAU,UAAAUA,UUAAUG,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| HNRNPC | 11 | 2006 | 0.028571429 | 0.0101118501 | 1.498526 | AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| IGF2BP3 | 7 | 1348 | 0.019047619 | 0.0067966546 | 1.486714 | AAAAAC,AAAACA,AAAUAC,ACACAC,CACACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| HNRNPCL1 | 7 | 1381 | 0.019047619 | 0.0069629182 | 1.451847 | AUUUUU,CUUUUU,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| SYNCRIP | 5 | 1041 | 0.014285714 | 0.0052498992 | 1.444212 | AAAAAA,UUUUUU | AAAAAA,UUUUUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| IGHMBP2 | 1 | 350 | 0.004761905 | 0.0017684401 | 1.429061 | AAAAAA | AAAAAA |
| RBM3 | 2 | 541 | 0.007142857 | 0.0027307537 | 1.387202 | AAGACU,AAUACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| QKI | 4 | 904 | 0.011904762 | 0.0045596534 | 1.384543 | ACACAC,AUUAAC,UCAUAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | AGAGGA | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RALY | 5 | 1117 | 0.014285714 | 0.0056328094 | 1.342647 | UUUUUC,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| TIAL1 | 29 | 5597 | 0.071428571 | 0.0282043531 | 1.340583 | AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUA,CUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| PABPC1 | 6 | 1321 | 0.016666667 | 0.0066606207 | 1.323237 | AAAAAA,AAAAAC,AGAAAA,CAAAUC,GAAAAA | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| TRA2A | 5 | 1133 | 0.014285714 | 0.0057134220 | 1.322146 | AAAGAA,AAGAAA,AAGAGG,AGAAGA,AGAGGA | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| HNRNPU | 5 | 1136 | 0.014285714 | 0.0057285369 | 1.318335 | AAAAAA,UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| DAZAP1 | 14 | 2878 | 0.035714286 | 0.0145052398 | 1.299927 | AAAAAA,AAUUUA,AGGUAA,AGUAAA,AGUAAG,AGUAUA,AGUAUG,UAGUAA,UAGUAU,UAGUUA,UUUUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| ELAVL1 | 16 | 3309 | 0.040476190 | 0.0166767432 | 1.279236 | AUUUAU,UAUUUA,UAUUUU,UGAUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUUAUU,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| TIA1 | 25 | 5140 | 0.061904762 | 0.0259018541 | 1.256995 | AUUUUC,AUUUUU,CCUUUC,CUUUUA,CUUUUU,GUUUUG,UAUUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUUA,UUUUUC,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| HNRNPA1 | 30 | 6340 | 0.073809524 | 0.0319478033 | 1.208090 | AAAAAA,AAAGAG,AAGAGG,AAUUUA,AGAGGA,AGAUUA,AUUUAA,AUUUAU,CCAAGG,GACUUA,GAGGAG,GGUUAG,GUAAGU,UAAGUA,UAGUUA,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU | AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU |
| IGF2BP2 | 9 | 2163 | 0.023809524 | 0.0109028617 | 1.126832 | AAAAAC,AAAACA,AAAUAC,ACACAC,CAAAUC,CACACA,CCAAAC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| ZFP36 | 39 | 9408 | 0.095238095 | 0.0474052801 | 1.006491 | AAAAAA,AAAAAC,AAAAAG,AAAACA,AAAAGA,AAACAA,AAAGAA,AACAAA,AAGAAA,AAUAAA,ACCUUU,ACUUUU,AGUAAA,AUAAAG,AUAAAU,AUUUAA,AUUUAU,CCUUUC,GUAAAG,UAAAGA,UAAAUA,UAAGUA,UAUUUA,UCUUUC,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU | AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.