ENSG00000106443:+:7:10982371:10983159

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000106443:+:7:10982371:10983159 ENSG00000106443 ENST00000403050 + 7 10982372 10983159 788 AUUCUGAAGGGAGUGGUAAUGGAAGUGAAGAUGCUUCAAAGGACAGUGGAGAAGGUUCCUGUAGUGAUUCUGAAGAAAAUAUUUUAGAAGAAGAACUGAAUGAAGAUAUUAAAGUAAAAGAAGAACAACUUAAAAAUUCUGCAGAGGAAGAAGUACUAUCAUCAGAAAAACAAUUAAUUAAAAUGGAAAAGAAGGAAGAAGAAGAAAAUGGAGAAAGACCUAGAAAGAAAAAGGAGAAAGAGAAGGAAAAAGAAAAGGAAAAGGAGAAAGAGAAGGAAAGAGAGAAGGAAAAAGAAAAAGCAACAGUAUCUGAGAAUGUGGCUGCUUCUGCUGCUGCCACCACACCAGCCACAAGUCCUCCUGCUGUUAACACAUCCCCUUCUGUUCCCACUACGACAACCGCUACAGAGGAACAAGUCAGCGAGCCAAAAAAAUGGAACCUUCGACGAAACCGACCACUUCUGGAUUUUGUGUCCAUGGAAGAGCUGAAUGACAUGGAUGACUAUGACAGUGAGGAUGACAAUGAUUGGCGACCUACUGUAGUAAAGAGAAAAGGGAGAUCUGCGUCUCAGAAAGAGGGAAGUGAUGGAGACAAUGAGGAUGAUGAAGAUGAGGGAAGCGGGAGUGAUGAAGACGAGAAUGAUGAAGGCAAUGAUGAAGAUCAUAGUAGCCCUGCCAGUGAAGGGGGUUGCAAGAAGAAGAAGAGUAAAGUUCUUAGCAGAAACAGUGCUGAUGAUGAGGAACUGACCAAUGAUAGCCUGACCCUAUCUCAAAGCAAGAGUAAUGAGAUUCUGAAGGGAGUGGUAAUGGAAGUGAAGAUGCUUCAAAGGACAGUGGA circ
ENSG00000106443:+:7:10982371:10983159 ENSG00000106443 ENST00000403050 + 7 10982372 10983159 22 AGAGUAAUGAGAUUCUGAAGGG bsj
ENSG00000106443:+:7:10982371:10983159 ENSG00000106443 ENST00000403050 + 7 10982172 10982381 210 GAACUAAAACCAUUGUAUCAACUUCAUUGAUUUAUUAUUUGAUCAGGUUGGGAAUGUCUACCAUUCUUUGACUUAAAUUUGUUUAUAUUGUUUUGCAAGUUAUUCACAAAUUUUGGUGGUUUCAUUUGUGUCAGCGUUGUGUGUGUGUGUGUGUAUGUAUAUACAUAUGUGUGGUUUUUUUUUUCUCAUAUUUUCAACAGAUUCUGAAGG ie_up
ENSG00000106443:+:7:10982371:10983159 ENSG00000106443 ENST00000403050 + 7 10983150 10983359 210 GAGUAAUGAGGUAGAUCAACCCAAUUUUUAUAUCUGUCUGUCUGGGGAAAAGGGAAUUCUUCUCUAAAUCACUCUACACAUUGUAUUAAGUGGCUUCCUUGAAAUCCUAUUUAUAGACGGCUGUGGGAUGAAUGAGCACCCUAACUGUAACAUUUUUUCAUUUGGCCAACAGACUUUUAUUAAAUAUCUACUAUUUGUCACCGUUCUCAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 9 688 0.012690355 0.0009985015 3.667824 AAGAAG AAGAAG
FXR1 4 411 0.006345178 0.0005970720 3.409684 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
PABPN1 12 1222 0.016497462 0.0017723764 3.218487 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPM 9 999 0.012690355 0.0014492040 3.130400 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
SRSF4 35 3740 0.045685279 0.0054214720 3.074973 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ANKHD1 2 339 0.003807107 0.0004927293 2.949828 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
TRA2A 58 6871 0.074873096 0.0099589296 2.910385 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TRA2B 60 7329 0.077411168 0.0106226650 2.865396 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC5 14 2400 0.019035533 0.0034795387 2.451727 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SART3 15 2634 0.020304569 0.0038186524 2.410669 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF10 79 13860 0.101522843 0.0200874160 2.337440 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,AGACAA,AGAGAA,AGAGAG,AGAGGA,AGAGGG,GAAAGA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGGAA,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBMX 27 4925 0.035532995 0.0071387787 2.315410 AAGAAG,AAGGAA,AAGUAA,AGAAGG,AGGAAG,AUCCCC,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
PABPC4 6 1251 0.008883249 0.0018144033 2.291592 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM46 24 4554 0.031725888 0.0066011240 2.264877 AAUGAA,AAUGAU,AUCAUA,AUGAAG,AUGAUA,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
NONO 7 1498 0.010152284 0.0021723567 2.224471 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM42 1 407 0.002538071 0.0005912752 2.101831 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
SRP14 3 847 0.005076142 0.0012289250 2.046336 CCUGUA,CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
SRSF5 40 8869 0.052030457 0.0128544391 2.017090 AAGAAG,AGAAGA,AGGAAG,CAACAG,CACAUC,GAAGAA,GAGGAA,GGAAGA,UACAGA,UGCAGA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
SRSF7 65 14481 0.083756345 0.0209873716 1.996677 AAAGGA,AAGAAG,AAGGAC,AAUGAU,ACGAGA,ACUACG,AGAAGA,AGACGA,AGAGAA,AGAGAG,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,CGACGA,CUACGA,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACGAG,GAGAGA,GAGAUC,GAGGAA,UACGAC AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
HNRNPA0 1 453 0.002538071 0.0006579386 1.947708 AGAUAU AAUUUA,AGAUAU,AGUAGG
RC3H1 6 1786 0.008883249 0.0025897275 1.778287 CCCUUC,CCUUCU,CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ACO1 4 1283 0.006345178 0.0018607779 1.769755 CAGUGA,CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
IGHMBP2 2 813 0.003807107 0.0011796520 1.690334 AAAAAA AAAAAA
G3BP2 5 1644 0.007614213 0.0023839405 1.675347 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 2 822 0.003807107 0.0011926949 1.674470 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
AGO1 1 548 0.002538071 0.0007956130 1.673594 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC1 15 4443 0.020304569 0.0064402624 1.656613 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM5 23 6879 0.030456853 0.0099705232 1.611026 AAAAAA,AAGGAA,AAGGAG,AAGGGG,AGGGAA,AGGGAG,GAAGGA,GAAGGG,GAAGGU,GAGGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
AGO2 5 1830 0.007614213 0.0026534924 1.520803 AAAAAA,AGUGCU,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPA2B1 26 8607 0.034263959 0.0124747476 1.457681 AAGAAG,AAGGAA,AAGGAG,AAGGGG,AGAUAU,AGGAAC,CAAGAA,GAAGGA,GGAACC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
DAZAP1 15 5964 0.020304569 0.0086445016 1.231950 AAAAAA,AGAUAU,AGGAAA,AGGAAG,AGGAUG,AGUAAA,UAGUAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
TARDBP 6 2654 0.008883249 0.0038476365 1.207115 GAAUGA,GAAUGU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZFP36 73 28400 0.093908629 0.0411588414 1.190055 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,ACAAGU,ACCUUC,ACUUCU,AGAAAG,AGGAAA,AGUAAA,CCCUGC,CCCUUC,CCUUCU,GGAAAG,GUAAAG,UAAAGA,UCCUCC,UCCUGC,UCCUGU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
LIN28A 10 4315 0.013959391 0.0062547643 1.158209 AGGAGA,GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ZCRB1 3 1605 0.005076142 0.0023274215 1.125000 AAUUAA,ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SFPQ 58 24050 0.074873096 0.0348548043 1.103090 AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,AGAGAG,AGAGGA,AGGAAC,AGGGGG,GAAGAA,GAAGAG,GAAGGA,GAGGAA,GGAAGA,GUAAUG,GUAGUG,GUGAUG,GUGAUU,UAAUGG,UCUGGA,UGAUGG,UGAUUG,UGGAAG,UGGAGA,UUAAUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
A1CF 3 1642 0.005076142 0.0023810421 1.092139 CAGUAU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 2 1234 0.003807107 0.0017897669 1.088923 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
SSB 2 1260 0.003807107 0.0018274462 1.058866 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
FXR2 7 3434 0.010152284 0.0049780156 1.028162 AGACAA,AGACGA,GACGAA,GACGAG,GGACAG,UGACAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF3 1 61 0.09090909 0.004060781 4.484596 GAGAUU AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC
SRSF9 1 134 0.09090909 0.008842023 3.361976 AUGAGA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF2 19 881 0.047619048 0.0044437727 3.421682 AUGUGU,GUAUGU,GUCUGU,GUGUGU,UAUGUG,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 14 669 0.035714286 0.0033756550 3.403262 GUGUGG,GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TARDBP 19 1034 0.047619048 0.0052146312 3.190902 GAAUGA,GAAUGU,GUGUGU,GUUGUG,GUUUUG,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
CELF4 14 776 0.035714286 0.0039147521 3.189508 GUGUGG,GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
CELF1 20 1097 0.050000000 0.0055320435 3.176044 CUGUCU,GUGUGU,GUUGUG,UGUCUG,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
IGF2BP1 2 173 0.007142857 0.0008766626 3.026408 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBM24 14 888 0.035714286 0.0044790407 2.995240 GUGUGG,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CSTF2 15 1022 0.038095238 0.0051541717 2.885798 GUGUGU,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
AGO1 3 283 0.009523810 0.0014308746 2.734641 AGGUAG,GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CPEB4 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
DDX19B 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
EIF4A3 6 691 0.016666667 0.0034864974 2.257115 UUUUUU UUUUUU
ESRP2 6 731 0.016666667 0.0036880290 2.176044 GGGAAA,GGGAAU,GGGGAA,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF6 10 1196 0.026190476 0.0060308343 2.118613 GUGUGG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAGAU,GUAUAU,UAAAUA,UACAUA,UAUAUA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
NOVA1 12 1428 0.030952381 0.0071997179 2.104038 AGCACC,AUCAAC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
U2AF2 8 1071 0.021428571 0.0054010480 1.988224 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
NOVA2 11 1434 0.028571429 0.0072299476 1.982516 AGAUCA,AGCACC,AUCAAC,UAGAUC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RALY 8 1117 0.021428571 0.0056328094 1.927609 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
KHSRP 44 5764 0.107142857 0.0290457477 1.883137 AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,CACCCU,GCUUCC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
ELAVL3 13 1928 0.033333333 0.0097188634 1.778106 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUCUA,UAUUUA,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBMS3 3 562 0.009523810 0.0028365578 1.747397 UAUAGA,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ELAVL1 22 3309 0.054761905 0.0166767432 1.715335 AUUUAU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGAUU,UUGUUU,UUUAUU,UUUGGU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
CPEB2 9 1487 0.023809524 0.0074969770 1.667158 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
SYNCRIP 6 1041 0.016666667 0.0052498992 1.666604 UUUUUU AAAAAA,UUUUUU
KHDRBS2 6 1051 0.016666667 0.0053002821 1.652825 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ZNF638 3 646 0.009523810 0.0032597743 1.546767 CGUUCU,CGUUGU,GGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 CUAAAA,CUAAAU,UAAAAC,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPU 6 1136 0.016666667 0.0057285369 1.540727 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 9 1646 0.023809524 0.0082980653 1.520692 AUUAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 ACUUAA,GACUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 AUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 57 9826 0.138095238 0.0495112858 1.479834 AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUAU,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUUUA,GAUUUA,GUUUUU,UAUAUA,UAUAUU,UAUUAU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UGAUUU,UGUAUU,UUAAGU,UUAUAU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAUA,UUUAUU,UUUCAU,UUUGAU,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 30 5597 0.073809524 0.0282043531 1.387889 AAAUUU,AAUUUU,AUUUUC,AUUUUG,AUUUUU,CUUUUA,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
QKI 4 904 0.011904762 0.0045596534 1.384543 AUCUAC,CUCAUA,UCAUAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
A1CF 2 598 0.007142857 0.0030179363 1.242939 GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TIA1 24 5140 0.059523810 0.0259018541 1.200411 AUUUUC,AUUUUG,AUUUUU,CUUUUA,GUUUUG,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
FUS 7 1711 0.019047619 0.0086255542 1.142922 UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PPIE 42 9262 0.102380952 0.0466696896 1.133390 AAAUAU,AAAUUU,AAUUUU,AUAUUU,AUUAAA,AUUAUU,AUUUAU,AUUUUU,UAAAUA,UAAAUU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAU,UUAUAU,UUAUUA,UUAUUU,UUUAUA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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