ENSG00000117262:+:1:145616233:145647267

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000117262:+:1:145616233:145647267 ENSG00000117262 MSTRG.2007.5 + 1 145616234 145647267 944 AUACUAUUUUUUGGAUUUGGGUGGCUUUUCUUCAUGCGCCAAUUGUUUAAAGACUAUGAGAUACGUCAGUAUGUUGUACAGGUGAUCUUCUCCGUGACGUUUGCAUUUUCUUGCACCAUGUUUGAGCUCAUCAUCUUUGAAAUCUUAGGAGUAUUGAAUAGCAGCUCCCGUUAUUUUCACUGGAAAAUGAACCUGUGUGUAAUUCUGCUGAUCCUGGUUUUCAUGGUGCCUUUUUACAUUGGCUAUUUUAUUGUGAGCAAUAUCCGACUACUGCAUAAACAACGACUGCUUUUUUCCUGUCUCUUAUGGCUGACCUUUAUGUAUUUCUUCUGGAAACUAGGAGAUCCCUUUCCCAUUCUCAGCCCAAAACAUGGGAUCUUAUCCAUAGAACAGCUCAUCAGCCGGGUUGGUGUGAUUGGAGUGACUCUCAUGGCUCUUCUUUCUGGAUUUGGUGCUGUCAACUGCCCAUACACUUACAUGUCUUACUUCCUCAGGAAUGUGACUGACACGGAUAUUCUAGCCCUGGAACGGCGACUGCUGCAAACCAUGGAUAUGAUCAUAAGCAAAAAGAAAAGGAUGGCAAUGGCACGGAGAACAAUGUUCCAGAAGGGGGAAGUGCAUAACAAACCAUCAGGUUUCUGGGGAAUGAUAAAAAGUGUUACCACUUCAGCAUCAGGAAGUGAAACUUCACUUUCCUUAUGUGCAAAAUGGAUAACACCAUGGCAUAAGACAAUCCCAUGAAGAUAAGAUAUAAAAGAAGAUAAUGUUUGAAAAGAAAGAAGGAAGUGGAUGCUUUGGAAGAAUUAAGCAGGCAGCUUUUUCUGGAAACAGCUGAUCUAUAUGCUACCAAGGAGAGAAUAGAAUACUCCAAAACCUUCAAGGGGAAAUAUUUUAAUUUUCUUGGUUACUUUUUCUCUAUUUACUGUGUUUGGAAAAUUUUCAUGAUACUAUUUUUUGGAUUUGGGUGGCUUUUCUUCAUGCGCCAAUUGUUUAA circ
ENSG00000117262:+:1:145616233:145647267 ENSG00000117262 MSTRG.2007.5 + 1 145616234 145647267 22 AAAUUUUCAUGAUACUAUUUUU bsj
ENSG00000117262:+:1:145616233:145647267 ENSG00000117262 MSTRG.2007.5 + 1 145616034 145616243 210 CUUCAAAACUCCAAGGGCAUUUAAAAAUUUAUUUCCAAUGUCAUGAGCUUUAAUAAUAGGUCUUAUAAGAGUGGAUCUUAUCUUUAAUCCCUGAAAUAAGUUAACCGUCUAGUUAGCAGACCUUUUAUCAUAAAAGAGUUUCUAUAAAACAUUUCUCAAAAGAAAAUAUGUAUUGACAUUCUAUUUUCUUUCUCCUCCAGAUACUAUUUU ie_up
ENSG00000117262:+:1:145616233:145647267 ENSG00000117262 MSTRG.2007.5 + 1 145647258 145647467 210 AAUUUUCAUGGUAAGUAUGUUAUUUUUAAUUAUCAGAGUUUAGAUGUUUUUUCCUGGUAGUGGCAGGGAGAUAAGAGUGGAUUUGACUGAUAUAUUGAACUAAAUUCCAAAUGUGAUUGCAUCAACAGAGAGCAUGAUCUUCCACAUCUCUGGGCUUCAUUCGUUAUCCUCUCUCCUUUUUAGAUUACAUAGAUAAGAAAGGUUGCAUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 3 77 0.004237288 0.0001130379 5.228263 GCAUAA GCAUAA
NXF1 1 286 0.002118644 0.0004159215 2.348758 AACCUG AACCUG
MATR3 4 739 0.005296610 0.0010724109 2.304212 AAUCUU,AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM41 7 1318 0.008474576 0.0019115000 2.148436 UACAUG,UACAUU,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TUT1 3 678 0.004237288 0.0009840095 2.106397 AAUACU,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
ANKHD1 1 339 0.002118644 0.0004927293 2.104274 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBM8A 2 611 0.003177966 0.0008869128 1.841240 AUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
U2AF2 6 1477 0.007415254 0.0021419234 1.791589 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM3 9 2152 0.010593220 0.0031201361 1.763460 AAACUA,AAGACU,AAUACU,AGACUA,AUACUA,GAAACU,GAUACG,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RALY 6 1553 0.007415254 0.0022520629 1.719249 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB2 9 2261 0.010593220 0.0032780993 1.692210 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBFOX2 1 452 0.002118644 0.0006564894 1.690298 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.002118644 0.0006579386 1.687116 AGAUAU AAUUUA,AGAUAU,AGUAGG
HNRNPCL1 8 2062 0.009533898 0.0029897078 1.673062 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SRSF11 2 688 0.003177966 0.0009985015 1.670267 AAGAAG AAGAAG
HNRNPC 14 3471 0.015889831 0.0050316361 1.659004 AUUUUU,CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 11 2867 0.012711864 0.0041563169 1.612798 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PABPN1 4 1222 0.005296610 0.0017723764 1.579384 AAAAGA,AGAAGA AAAAGA,AGAAGA
CSTF2 7 1967 0.008474576 0.0028520334 1.571150 GUGUGU,GUGUUU,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBMS1 1 497 0.002118644 0.0007217036 1.553663 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
KHDRBS2 6 1858 0.007415254 0.0026940701 1.460709 AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CELF1 8 2391 0.009533898 0.0034664959 1.459588 CUGUCU,GUGUGU,UGUGUG,UGUGUU,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PTBP1 62 16854 0.066737288 0.0244263326 1.450056 ACUUUC,ACUUUU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCUUUC,CCUUUU,CUCUUA,CUCUUC,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GUCUUA,UACUUU,UAUUUU,UCUCUU,UCUUCU,UCUUUC,UUACUU,UUAUUU,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
ESRP2 7 2150 0.008474576 0.0031172377 1.442873 GGGAAA,GGGAAG,GGGAAU,GGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF2 6 1886 0.007415254 0.0027346479 1.439141 GUAUGU,GUGUGU,UAUGUG,UAUGUU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TIA1 33 9206 0.036016949 0.0133428208 1.432612 AUUUUC,AUUUUU,CCUUUC,CUUUUC,CUUUUU,GUUUUC,UAUUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB4 2 821 0.003177966 0.0011912456 1.415633 UUUUUU UUUUUU
DDX19B 2 821 0.003177966 0.0011912456 1.415633 UUUUUU UUUUUU
EIF4A3 2 821 0.003177966 0.0011912456 1.415633 UUUUUU UUUUUU
TIAL1 35 10182 0.038135593 0.0147572438 1.369715 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUC,CUUUUU,GUUUUC,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF5 4 1415 0.005296610 0.0020520728 1.367987 GUGUGU,GUGUUU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF4 5 1782 0.006355932 0.0025839306 1.298536 GGUGUG,GUGUGU,GUGUUU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ELAVL2 59 18468 0.063559322 0.0267653478 1.247737 AAUUUU,AUAUUU,AUUUAC,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUUCU,CUUUUU,GUAUUG,GUUUUC,UAAUUU,UACUUU,UAUGUU,UAUUGA,UAUUGU,UAUUUA,UAUUUU,UCUUAU,UGUAUU,UUAAUU,UUACUU,UUAUGU,UUAUUG,UUAUUU,UUCUUU,UUUAAU,UUUACU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZFP36L2 3 1277 0.004237288 0.0018520827 1.193993 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
A1CF 4 1642 0.005296610 0.0023810421 1.153476 CAGUAU,UCAGUA,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPM 2 999 0.003177966 0.0014492040 1.132843 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBMX 13 4925 0.014830508 0.0071387787 1.054819 AAGAAG,AAGGAA,AAGUGU,AGAAGG,AGGAAG,AGUGUU,AUCCCA,GAAGGA,UAACAA,UAAGAC AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
HNRNPAB 4 1782 0.005296610 0.0025839306 1.035502 AAAGAC,AAGACA,AGACAA,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TUT1 1 10 0.09090909 0.0007204611 6.979360 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM46 1 14 0.09090909 0.0009824469 6.531901 AUGAUA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
RBM3 1 20 0.09090909 0.0013754257 6.046474 GAUACU AAAACG,AAAACU,AAGACU,AAUACG,AAUACU,AUACUA,GAAACU,GAGACG,GAGACU,GAUACU
YTHDC1 1 20 0.09090909 0.0013754257 6.046474 UGAUAC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
PABPN1 2 178 0.007142857 0.0009018541 2.985535 AAAAGA AAAAGA,AGAAGA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGACUG UGACUG,UGCAUG
RBFOX1 3 287 0.009523810 0.0014510278 2.714464 AGCAUG,GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AUACUA,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
AGO1 1 283 0.004761905 0.0014308746 1.734641 GGUAGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM24 4 888 0.011904762 0.0044790407 1.410277 AGAGUG,GAGUGG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUAAAA,AUUUAA,CUAAAU,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAAUAA,AGAUAA,AUAAAA,UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAAGAA,AAUAAG,AUAAGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUCUCU,CUCUGG,UCUCUC,UCUCUG CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AAUUUA,AAUUUU,AUUUAA,AUUUAU,AUUUUC,AUUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GUAUUG,GUUUUU,UAAGUU,UAGUUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UCUUAU,UGUAUU,UUAAUU,UUAUUU,UUCAUU,UUCUUU,UUUAAU,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUC,AUUUUU,CUCCUU,CUUUUA,CUUUUU,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
PPIE 42 9262 0.102380952 0.0466696896 1.133390 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUU,AAUAAU,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAUA,AUAUAU,AUUUAA,AUUUAU,AUUUUU,UAAAAA,UAAAUU,UAAUAA,UAAUUA,UAUAAA,UAUAUU,UAUUUU,UUAAAA,UUAAUA,UUAAUU,UUAUAA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAAGAA,AAGAAA,AGAAAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TIAL1 23 5597 0.057142857 0.0282043531 1.018655 AAAUUU,AAUUUU,AUUUUC,AUUUUU,CUUUUA,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPA1 26 6340 0.064285714 0.0319478033 1.008781 AAAGAG,AAUUUA,AGAUUA,AGGGCA,AGUUAG,AUUUAA,AUUUAU,CAGGGA,CCAAGG,GAGUGG,GGCAGG,GUAAGU,GUUUAG,UAAGUA,UAGAUU,UAGGUC,UAGUUA,UUAGAU,UUAUUU,UUUAGA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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