ENSG00000198815:-:1:42278347:42311110

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198815:-:1:42278347:42311110 ENSG00000198815 ENST00000372572 - 1 42278348 42311110 386 AUUCUCUUUGUGGCCAGAUGGGUUUGUAUGGACAGGCUUGUCCAUCUGUAACUUCAUUAAGGAUGACAUCUGAACUGGAGAGCAGCCUAACGUCUAUGGACUGGUUACCACAGCUCACCAUGAGAGCAGCCAUCCAAAAAUCUGAUGCUACACAAAAUGCACAUGGAACAGGAAUUUCUAAGAAGAAUGCACUCCUUGACCCAAAUACAACUCUGGACCAGGAAGAAGUCCAACAGCACAAAGAUGGGAAACCUCCAUACAGUUAUGCCAGCCUCAUUACAUUUGCAAUUAAUAGCUCACCCAAAAAGAAAAUGACUUUAAGUGAAAUUUAUCAGUGGAUUUGUGAUAACUUCCCAUAUUAUAGAGAGGCUGGCAGUGGUUGGAAGAUUCUCUUUGUGGCCAGAUGGGUUUGUAUGGACAGGCUUGUCCAUCUGUA circ
ENSG00000198815:-:1:42278347:42311110 ENSG00000198815 ENST00000372572 - 1 42278348 42311110 22 GUGGUUGGAAGAUUCUCUUUGU bsj
ENSG00000198815:-:1:42278347:42311110 ENSG00000198815 ENST00000372572 - 1 42311101 42311310 210 CUGAGUGUAAUCCCUCUUAUGACUCAGUAGCAUUUUUCUUUCAUGUAAGUUUGUGUUCUGAUGGGGUGAUUCUUUUAGUAGAAUUCUUUAGUAGAACAUUCUACUUCUGUUUUCAGAGUGUUUUAAAUUAAAUCUAAAGUGAGACUUAUGGUUUAAUUUACUUUGCAGUAUCUGAUAACUAACUCUUCUUUGCUUUUCAGAUUCUCUUUG ie_up
ENSG00000198815:-:1:42278347:42311110 ENSG00000198815 ENST00000372572 - 1 42278148 42278357 210 UGGUUGGAAGGUAAGGAUUUUAUUUAAAUUAUUACUUUUAUGAAGUAAGCAAUGAUGUUGAUUUCUACUGAAAAUAAAGCUUUGUGAAUGCUCAUGUAAUUGAAUAUGAAAUUUUGAUCUCUAGUGAUUUUUAGGAUGUCAAAAAGUUUUUAGCUUAGGUGAAUAACUUUAUUUUUGGUAGAUUAUUAGUGUGUUGAAGCUUGAUUAUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 1 411 0.005181347 0.0005970720 3.117350 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA0 1 453 0.005181347 0.0006579386 2.977302 AAUUUA AAUUUA,AGAUAU,AGUAGG
SRSF11 2 688 0.007772021 0.0009985015 2.960453 AAGAAG AAGAAG
TUT1 1 678 0.005181347 0.0009840095 2.396583 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 1054 0.007772021 0.0015289102 2.345786 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
EIF4B 2 1179 0.007772021 0.0017100607 2.184242 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 2 1222 0.007772021 0.0017723764 2.132605 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRSF4 8 3740 0.023316062 0.0054214720 2.104568 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ACO1 2 1283 0.007772021 0.0018607779 2.062384 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 2 1318 0.007772021 0.0019115000 2.023585 UACAUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ENOX1 6 3195 0.018134715 0.0046316558 1.969154 AAUACA,AUACAG,CAUACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
YBX2 2 1480 0.007772021 0.0021462711 1.856457 ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
G3BP2 2 1644 0.007772021 0.0023839405 1.704942 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
HNRNPAB 2 1782 0.007772021 0.0025839306 1.588722 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC5 3 2400 0.010362694 0.0034795387 1.574431 AGAAAA,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC4 1 1251 0.005181347 0.0018144033 1.513832 AAAAAG AAAAAA,AAAAAG
HNRNPL 7 5085 0.020725389 0.0073706513 1.491535 AAAUAC,AAUACA,ACACAA,ACCACA,CACAAA,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ZFP36L2 1 1277 0.005181347 0.0018520827 1.484179 AUUUAU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS3 1 1283 0.005181347 0.0018607779 1.477421 UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ESRP2 2 2150 0.007772021 0.0031172377 1.318022 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
TRA2B 9 7329 0.025906736 0.0106226650 1.286181 AAAGAA,AAGAAG,AAGAAU,AGAAGA,AGGAAG,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SRSF5 11 8869 0.031088083 0.0128544391 1.274095 AACAGC,AAGAAG,AGAAGA,AGGAAG,CAACAG,CACAGC,GAAGAA,GGAAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
NONO 1 1498 0.005181347 0.0021723567 1.254066 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
NELFE 3 3028 0.010362694 0.0043896388 1.239225 CUCUGG,CUGGUU,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
TRA2A 8 6871 0.023316062 0.0099589296 1.227262 AAAGAA,AAGAAA,AAGAAG,AGAAGA,AGGAAG,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZCRB1 1 1605 0.005181347 0.0023274215 1.154595 AAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
A1CF 1 1642 0.005181347 0.0023810421 1.121734 AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
FXR2 3 3434 0.010362694 0.0049780156 1.057757 GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ZNF638 1 1773 0.005181347 0.0025708878 1.011061 GGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF4 1 18 0.09090909 0.001244433 6.190864 GGAAGA AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
SRSF5 1 44 0.09090909 0.002947341 4.946939 GGAAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
SRSF6 1 68 0.09090909 0.004519256 4.330267 GGAAGA AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SFPQ 1 153 0.09090909 0.010086455 3.172005 GGAAGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF1 2 625 0.13636364 0.041000786 1.733736 GAAGAU,GGAAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 4 228 0.011904762 0.0011537686 3.367113 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
EIF4B 2 226 0.007142857 0.0011436921 2.642803 GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 AAUUAA,AUUUAA,GACUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGU,GUGUUG,GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 2 340 0.007142857 0.0017180572 2.055723 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
A1CF 4 598 0.011904762 0.0030179363 1.979904 CAGUAU,UAAUUG,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM24 6 888 0.016666667 0.0044790407 1.895704 AGAGUG,AGUGUG,GAGUGU,GUGUGU,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUGU,GUGUUG,GUGUUU,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
CELF4 5 776 0.014285714 0.0039147521 1.867580 GUGUGU,GUGUUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
QKI 5 904 0.014285714 0.0045596534 1.647577 ACUAAC,ACUUAU,AUCUAA,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TIAL1 36 5597 0.088095238 0.0282043531 1.643146 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CUUUUA,CUUUUC,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CELF1 6 1097 0.016666667 0.0055320435 1.591081 GUGUGU,GUGUUG,GUUUGU,UGUGUU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
ELAVL2 61 9826 0.147619048 0.0495112858 1.576050 AAUUUA,AAUUUU,AUUAUU,AUUUAA,AUUUAC,AUUUUA,AUUUUG,AUUUUU,CAUUUU,CUUUUA,GAUUUU,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAUUUA,UAUUUU,UCUUAU,UCUUUU,UGAUUU,UUAAUU,UUACUU,UUAUGU,UUAUUU,UUCUUU,UUGAUU,UUUAAU,UUUACU,UUUAGU,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUG,AGGAUU AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
ELAVL1 17 3309 0.042857143 0.0166767432 1.361698 UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGAUU,UUUAGU,UUUAUU,UUUGGU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAUUUA,UAUUUA,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGUAAG,UAGGUG,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
PABPC5 2 596 0.007142857 0.0030078597 1.247764 GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGAAU,GUGUGU,UGAAUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
TIA1 23 5140 0.057142857 0.0259018541 1.141518 AUUUUG,AUUUUU,CUUUUA,CUUUUC,GUUUUA,GUUUUC,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUUA,UUUUUC,UUUUUG AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUGAU,AUGAAA,AUGAAG,AUGAUG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PPIE 41 9262 0.100000000 0.0466696896 1.099442 AAAAUA,AAAUAA,AAAUUA,AAAUUU,AAUAAA,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUUAAA,AUUAUU,AUUUAA,AUUUUA,AUUUUU,UAAAUU,UAAUUU,UAUUUA,UAUUUU,UUAAAU,UUAAUU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AUCUAA,GUAUCU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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