ENSG00000164535:-:7:6432836:6436533

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000164535:-:7:6432836:6436533 ENSG00000164535 MSTRG.29469.1 - 7 6432837 6436533 522 GAACGAUUUGUAACCCUGGACCGCGGAAGUCUAUGUCUAAGCUGCUUUACAUCCGCCUGGCGCUGUUUUUUCCAGAGAUGGUCUGGGCCUCUCUGGGGGCUGCCUGGGUGGCAGAUGGUGUUCAGUGCGACAGGACAGUUGUAAACGGCAUCAUCGCAACCGUCGUGGUCAGUUGGAUCAUCAUCGCUGCCACAGUGGUUUCCAUUAUCAUUGUCUUUGACCCUCUUGGGGGGAAAAUGGCUCCAUAUUCCUCUGCCGGCCCCAGCCACCUGGAUAGUCAUGAUUCAAGCCAGUUACUUAAUGGCCUCAAGACAGCAGCUACAAGCGUGUGGGAAACCAGAAUCAAGCUCUUGUGCUGUUGCAUUGGGAAAGACGACCAUACUCGGGUUGCUUUUUCGAGACACAGAUCUGGUGCCCAGCGACAUUGCGGCGGGCCUCGCCCUGCUUCAUCAGCAACAGGACAAUAUCAGGAACAACCAAGAGCCUGCCCAGGUGGUCUGCCAUGCCCCAGGGAGCUCCCAGGAACGAUUUGUAACCCUGGACCGCGGAAGUCUAUGUCUAAGCUGCUUUAC circ
ENSG00000164535:-:7:6432836:6436533 ENSG00000164535 MSTRG.29469.1 - 7 6432837 6436533 22 GGAGCUCCCAGGAACGAUUUGU bsj
ENSG00000164535:-:7:6432836:6436533 ENSG00000164535 MSTRG.29469.1 - 7 6436524 6436733 210 ACUUCUUGUCACGUUUCCCAUCCUCAUUUUCUCACUUGCUGUCUGACUUAGGUGCUGAUUACCAAUUAUAAGUAGAAAAAGUCAGGAGGCGGGUGUGCACAGUACAAAUGUAUGCUCUGCAAAAGCUGUAUUUUUGCAAAAAGGAAGCUCUUCAUCUCUGAGGAAGCAACUGAGCAGUCGGAACGUUUUUUGUAUUUCAGGAACGAUUUG ie_up
ENSG00000164535:-:7:6432836:6436533 ENSG00000164535 MSTRG.29469.1 - 7 6432637 6432846 210 GAGCUCCCAGGUGAGCCUGGCUUCAUGGAGUGUCCAGUUCUGACACUUACACCUUUUGGUGGGUCUUCAGAAUCAUACAGCUAACCUAUAGCAAUUUCUUCCUCCCUUCCUUCAUUCCCCUUUCCCCUCCCUCCCCUCCCCCUCCUCCCCUUCCCUCCCCUCUCCCACCUUUUUUUUUUUUUUUUUUAAGACGGAGUCUCGCUCUGUCGC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 1 267 0.003831418 0.0003883867 3.302313 CUCUCU CUCUCU
ANKHD1 1 339 0.003831418 0.0004927293 2.959011 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SSB 5 1260 0.011494253 0.0018274462 2.653012 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMY1A1 1 489 0.003831418 0.0007101099 2.431764 CAAGAC ACAAGA,CAAGAC
SNRNP70 4 1237 0.009578544 0.0017941145 2.416534 AAUCAA,AUCAAG,AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
U2AF2 4 1477 0.009578544 0.0021419234 2.160899 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
IFIH1 2 904 0.005747126 0.0013115296 2.131590 CCGCGG,CGCGGA CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ESRP2 6 2150 0.013409962 0.0031172377 2.104965 GGGAAA,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
ZC3H10 2 1053 0.005747126 0.0015274610 1.911705 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RALY 3 1553 0.007662835 0.0022520629 1.766631 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
CPEB4 1 821 0.003831418 0.0011912456 1.685407 UUUUUU UUUUUU
DDX19B 1 821 0.003831418 0.0011912456 1.685407 UUUUUU UUUUUU
EIF4A3 1 821 0.003831418 0.0011912456 1.685407 UUUUUU UUUUUU
SRP14 1 847 0.003831418 0.0012289250 1.640481 CGCCUG CCUGUA,CGCCUG,CUGUAG,GCCUGU
ACO1 2 1283 0.005747126 0.0018607779 1.626935 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM41 2 1318 0.005747126 0.0019115000 1.588136 UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
YBX1 15 7119 0.030651341 0.0103183321 1.570740 AUCAUC,CAACCA,CAGCAA,CAUCAU,CAUCGC,CCCUGC,GAUCUG,GCCUGC,GGUCUG,GUCUGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
NONO 2 1498 0.005747126 0.0021723567 1.403580 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPM 1 999 0.003831418 0.0014492040 1.402618 GGGGGG AAGGAA,GAAGGA,GGGGGG
NOVA2 7 4013 0.015325670 0.0058171047 1.397577 AGUCAU,AUCAUC,GAGACA,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ENOX1 5 3195 0.011494253 0.0046316558 1.311313 AAGACA,AGACAG,AGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
MBNL1 24 13372 0.047892720 0.0193802045 1.305223 AUGCCC,CCUGCU,CGCUGC,CGCUGU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCUU,CUUGUG,GCGCUG,GCUGCU,GCUUUU,GUGCUG,UCGCUG,UGCGGC,UGCUGU,UGCUUC,UGCUUU,UUGCUU,UUGUGC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
FXR2 5 3434 0.011494253 0.0049780156 1.207270 AGACAG,AGACGA,GACAGG,GGACAA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPC 5 3471 0.011494253 0.0050316361 1.191813 CUUUUU,GGGGGG,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
EIF4B 1 1179 0.003831418 0.0017100607 1.163831 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF4 2 1782 0.005747126 0.0025839306 1.153273 GGUGUU,GUGUGG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 2 1782 0.005747126 0.0025839306 1.153273 AAAGAC,AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NELFE 4 3028 0.009578544 0.0043896388 1.125704 CUCUCU,CUCUGG,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
PUM2 2 1890 0.005747126 0.0027404447 1.068431 UACAUC,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
NOVA1 5 3872 0.011494253 0.0056127669 1.034129 AUCAUC,GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPH2 14 9711 0.028735632 0.0140746688 1.029740 AUUGGG,CAGGAC,CUGGGG,GGGCUG,GGGGAA,GGGGCU,GGGGGA,GGGGGC,GGGGGG,UGGGGG,UGGGUG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPU 2 1965 0.005747126 0.0028491350 1.012317 GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NONO 1 11 0.09090909 0.0007859576 6.853829 AGGAAC AGAGGA,AGGAAC,GAGGAA
HNRNPA2B1 1 49 0.09090909 0.0032748232 4.794936 AGGAAC AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
G3BP1 1 69 0.09090909 0.0045847524 4.309509 CCCAGG ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SRSF9 2 134 0.13636364 0.0088420225 3.946939 AGGAAC,GGAACG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SFPQ 1 153 0.09090909 0.0100864553 3.172005 AGGAAC AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF1 3 625 0.18181818 0.0410007860 2.148773 AGGAAC,CCAGGA,CCCAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CPEB4 14 691 0.035714286 0.003486497 3.356651 UUUUUU UUUUUU
DDX19B 14 691 0.035714286 0.003486497 3.356651 UUUUUU UUUUUU
EIF4A3 14 691 0.035714286 0.003486497 3.356651 UUUUUU UUUUUU
RALY 16 1117 0.040476190 0.005632809 2.845147 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SYNCRIP 14 1041 0.035714286 0.005249899 2.766140 UUUUUU AAAAAA,UUUUUU
KHDRBS2 14 1051 0.035714286 0.005300282 2.752360 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 14 1071 0.035714286 0.005401048 2.725190 UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 18 1381 0.045238095 0.006962918 2.699774 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 19 1487 0.047619048 0.007496977 2.667158 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
EIF4B 2 226 0.007142857 0.001143692 2.642803 GUCGGA,UCGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPU 14 1136 0.035714286 0.005728537 2.640263 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ERI1 2 228 0.007142857 0.001153769 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
NOVA1 16 1428 0.040476190 0.007199718 2.491061 UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PCBP2 46 4164 0.111904762 0.020984482 2.414877 AUUACC,AUUCCC,CAAUUA,CCCCCU,CCCUCC,CCCUUC,CCUCCC,CCUCCU,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUCCC,CUUCCU,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
NOVA2 14 1434 0.035714286 0.007229948 2.304444 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
HNRNPC 19 2006 0.047619048 0.010111850 2.235492 AUUUUU,CUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 16 1711 0.040476190 0.008625554 2.230384 GGGUGU,UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
KHDRBS3 14 1646 0.035714286 0.008298065 2.105654 UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPM 1 222 0.004761905 0.001123539 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPK 27 3244 0.066666667 0.016349254 2.027741 CCAUCC,CCCCCU,CCCCUU,UCCCAC,UCCCAU,UCCCCC,UCCCCU,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
PCBP1 40 4891 0.097619048 0.024647320 1.985732 AUUACC,AUUCCC,CAAUUA,CAUUCC,CCAUCC,CCCACC,CCCUCC,CCCUCU,CCCUUC,CCUCCC,CCUUCC,CCUUUC,CUAACC,CUUCCC,CUUUCC,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ELAVL3 15 1928 0.038095238 0.009718863 1.970751 UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM4 8 1094 0.021428571 0.005516929 1.957598 CCUUCC,CUUCCU,CUUCUU,UCCUUC,UUCCUU,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
NONO 2 364 0.007142857 0.001838976 1.957598 AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
KHDRBS1 14 1945 0.035714286 0.009804514 1.864983 UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SRSF4 3 558 0.009523810 0.002816405 1.757684 AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
ELAVL4 18 2916 0.045238095 0.014696695 1.622046 UAUUUU,UUGUAU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PABPC4 2 462 0.007142857 0.002332729 1.614483 AAAAAG AAAAAA,AAAAAG
RC3H1 3 631 0.009523810 0.003184200 1.580608 CCCUUC,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
DAZAP1 16 2878 0.040476190 0.014505240 1.480499 AGGAAG,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
RBM28 1 340 0.004761905 0.001718057 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ELAVL1 18 3309 0.045238095 0.016676743 1.439701 UAUUUU,UUUGGU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PTBP1 44 8003 0.107142857 0.040326481 1.409736 AGCUGU,AUUUUC,AUUUUU,CCUUCC,CCUUUC,CCUUUU,CUCCCC,CUCUUC,CUUCCU,CUUCUU,CUUUCC,CUUUUU,GCUCCC,UAUUUU,UCCCCC,UUCCCC,UUCCUU,UUCUUC,UUCUUG,UUUCCC,UUUCUU,UUUUCU,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
QKI 4 904 0.011904762 0.004559653 1.384543 AAUCAU,AUCAUA,CUAACC,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
TIA1 27 5140 0.066666667 0.025901854 1.363910 AUUUUC,AUUUUU,CCUUUC,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBMS3 2 562 0.007142857 0.002836558 1.332360 CUAUAG,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ENOX1 3 756 0.009523810 0.003813986 1.320239 AGUACA,AUACAG,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
KHSRP 29 5764 0.071428571 0.029045748 1.298174 AUGUAU,CACCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCUUCC,CUCCCU,CUGUAU,GGCUUC,UAUUUU,UCCCUC,UCCUUC,UGUAUG,UUGUAU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
MSI1 4 961 0.011904762 0.004846836 1.296424 AGGAAG,AGGAGG,UAGGUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF3 18 3825 0.045238095 0.019276501 1.230695 AACGAU,ACGAUU,ACUUCU,CUCUUC,CUUCAG,CUUCAU,CUUCUU,GCUUCA,UACAAA,UACAGC,UCAUCU,UCUUCA,UCUUCC,UUCAUC,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
TIAL1 25 5597 0.061904762 0.028204353 1.134133 AUUUUC,AUUUUU,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUUCAG,UUUUAA,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FMR1 22 5430 0.054761905 0.027362958 1.000948 AAGGAA,AGGAAG,AGGAGG,AUGGAG,CUGAGG,UGAGGA,UGGAGU,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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