ENSG00000156110:+:10:74394140:74398579

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000156110:+:10:74394140:74398579 ENSG00000156110 ENST00000673310 + 10 74394141 74398579 282 UGGAUGAUUCAACAGCCACACAAAGCAGCAACAUUUUUUGGAUGCAUUGGGAUAGAUAAAUUUGGGGAGAUCCUGAAGAGAAAAGCUGCUGAAGCCCAUGUGGAUGCUCAUUACUACGAGCAGAAUGAGCAGCCAACAGGAACUUGUGCUGCAUGCAUCACUGGUGACAACAGGUCCCUCAUAGCUAAUCUUGCUGCUGCCAAUUGUUAUAAAAAGGAAAAACAUCUUGAUCUGGAGAAAAACUGGAUGUUGGUAGAAAAAGCAAGAGUUUGUUAUAUAGCAUGGAUGAUUCAACAGCCACACAAAGCAGCAACAUUUUUUGGAUGCAUUGG circ
ENSG00000156110:+:10:74394140:74398579 ENSG00000156110 ENST00000673310 + 10 74394141 74398579 22 GUUAUAUAGCAUGGAUGAUUCA bsj
ENSG00000156110:+:10:74394140:74398579 ENSG00000156110 ENST00000673310 + 10 74393941 74394150 210 CCCCAAAGCAGUAUAAGAUAUUACAUGGUUGUUAUAUUAAGUUUUUUUAAUCGUAAGUGAUAGCACAGAAUUGAAAUCCCAUUCAUAACAGCUACAGUUUCUCACAAAGCAUUCUUGUCACAUCACUAUCUGUGGCAGAAUAUUAAACUAUGUGUACCAUUUUUUUGCCCCAUUAAAUUAUUUAUGUUCCUGUUUUACAGUGGAUGAUUC ie_up
ENSG00000156110:+:10:74394140:74398579 ENSG00000156110 ENST00000673310 + 10 74398570 74398779 210 UUAUAUAGCAGUAAGUACUUACCUAAUUCAAAUCUCUAGUACAUAUUUACAUGAUGGAUUAUAGUUGUUGUCUGAUAUAUAUUUUAAAAUAAUUAUCUUUUAUUUACCCUGCAAAUUAUUUAUCUCUCUCAAAGCAUAUGUUAGAUUCACUAUUGUGAAAAUAGAACAGAAAUCAUUAUCUUUCUAUGGGUAACAUAAUUUGUAUUAUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 4 739 0.017730496 0.0010724109 4.047303 AAUCUU,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS1 2 497 0.010638298 0.0007217036 3.881717 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM42 1 407 0.007092199 0.0005912752 3.584331 ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
AKAP1 1 426 0.007092199 0.0006188101 3.518664 UAUAUA AUAUAU,UAUAUA
RBFOX2 1 452 0.007092199 0.0006564894 3.433389 UGCAUG UGACUG,UGCAUG
RBFOX1 3 1077 0.014184397 0.0015622419 3.182615 AGCAUG,GCAUGC,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SART3 8 2634 0.031914894 0.0038186524 3.063094 AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC3 3 1234 0.014184397 0.0017897669 2.986461 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
RBMS3 3 1283 0.014184397 0.0018607779 2.930327 AUAUAG,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
YBX2 3 1480 0.014184397 0.0021462711 2.724401 AACAUC,ACAACA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CPEB4 1 821 0.007092199 0.0011912456 2.573762 UUUUUU UUUUUU
DDX19B 1 821 0.007092199 0.0011912456 2.573762 UUUUUU UUUUUU
EIF4A3 1 821 0.007092199 0.0011912456 2.573762 UUUUUU UUUUUU
PABPC4 2 1251 0.010638298 0.0018144033 2.551700 AAAAAG AAAAAA,AAAAAG
PABPC1 9 4443 0.035460993 0.0064402624 2.461042 AAAAAC,AGAAAA,CUAAUC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
KHDRBS2 3 1858 0.014184397 0.0026940701 2.396446 AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPM 1 999 0.007092199 0.0014492040 2.290972 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPCL1 3 2062 0.014184397 0.0029897078 2.246228 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
RALY 2 1553 0.010638298 0.0022520629 2.239948 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
G3BP2 2 1644 0.010638298 0.0023839405 2.157847 GGAUAG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
CPEB2 3 2261 0.014184397 0.0032780993 2.113373 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ZNF638 2 1773 0.010638298 0.0025708878 2.048929 GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPAB 2 1782 0.010638298 0.0025839306 2.041628 ACAAAG,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC5 3 2400 0.014184397 0.0034795387 2.027337 AGAAAA AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SNRNP70 1 1237 0.007092199 0.0017941145 1.982961 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PUM2 2 1890 0.010638298 0.0027404447 1.956785 UAGAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
KHDRBS3 4 3429 0.017730496 0.0049707696 1.834692 AGAUAA,AUAAAA,GAUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
YTHDC1 7 5576 0.028368794 0.0080822104 1.811483 GCAUGC,GGAUGC,UACUAC,UGCUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
ESRP2 2 2150 0.010638298 0.0031172377 1.770927 GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
U2AF2 1 1477 0.007092199 0.0021419234 1.727326 UUUUUU UUUUCC,UUUUUC,UUUUUU
NONO 1 1498 0.007092199 0.0021723567 1.706972 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
SYNCRIP 1 1634 0.007092199 0.0023694485 1.581682 UUUUUU AAAAAA,UUUUUU
SF1 5 4931 0.021276596 0.0071474739 1.573762 GCUGCC,UGCUGA,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPC 3 3471 0.014184397 0.0050316361 1.495205 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 2 2654 0.010638298 0.0038476365 1.467223 GAAUGA,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
MBNL1 14 13372 0.053191489 0.0193802045 1.456612 AUGCUC,CUGCCA,CUGCUG,CUUGCU,CUUGUG,GCUGCU,GUGCUG,UGCUGC,UUGCUG,UUGUGC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
QKI 2 2805 0.010638298 0.0040664663 1.387420 CUAAUC,CUCAUA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
IGF2BP3 4 4815 0.017730496 0.0069793662 1.345065 AAAAAC,AAAACA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PUM1 5 5823 0.021276596 0.0084401638 1.333924 AAUUGU,AGAUAA,CAGAAU,UAGAUA,UAUAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPU 1 1965 0.007092199 0.0028491350 1.315709 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS1 3 4064 0.014184397 0.0058910141 1.267717 AUAAAA,UAAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM3 1 2152 0.007092199 0.0031201361 1.184624 AAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
LIN28A 3 4315 0.014184397 0.0062547643 1.181277 GGAGAA,GGAGAU,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
YBX1 5 7119 0.021276596 0.0103183321 1.044058 AACAUC,ACAUCU,CAGCAA,CCACAC,GAUCUG AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
CELF1 1 2391 0.007092199 0.0034664959 1.032755 GUUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
FUS 2 3648 0.010638298 0.0052881452 1.008434 UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX1 1 5 0.09090909 0.0003929788 7.853829 AGCAUG AGCAUG,GCAUGU,UGACUG,UGCAUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 4 217 0.011904762 0.0010983474 3.438132 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
AKAP1 4 221 0.011904762 0.0011185006 3.411901 AUAUAU,UAUAUA AUAUAU,UAUAUA
ZFP36L2 11 774 0.028571429 0.0039046755 2.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
RBMS3 6 562 0.016666667 0.0028365578 2.554752 AUAUAG,AUAUAU,UAUAGC,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 ACAAAG,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
A1CF 5 598 0.014285714 0.0030179363 2.242939 AGUAUA,AUAAUU,CAGUAU,UAAUUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ELAVL3 17 1928 0.042857143 0.0097188634 2.140676 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CELF2 7 881 0.019047619 0.0044437727 2.099754 AUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPD 12 1488 0.030952381 0.0075020153 2.044700 AGAUAU,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ZNF638 4 646 0.011904762 0.0032597743 1.868695 GGUUGU,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
ELAVL4 20 2916 0.050000000 0.0146966949 1.766436 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PPIE 64 9262 0.154761905 0.0466696896 1.729493 AAAAUA,AAAUAA,AAAUUA,AAUAAU,AAUAUU,AAUUAU,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUUA,UAAUUU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAUAU,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUACAU,UACAUA,UAUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 GGAUGA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ELAVL1 18 3309 0.045238095 0.0166767432 1.439701 AUUUAU,UAUUUA,UAUUUU,UGUUUU,UUAUUU,UUUAUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL2 55 9826 0.133333333 0.0495112858 1.429208 AAUUUG,AUAUUU,AUUAUU,AUUUAC,AUUUAU,AUUUUA,AUUUUU,CAUUUU,CUUUCU,CUUUUA,GUUUUA,GUUUUU,UAAGUU,UAAUUU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGU,UAUUUA,UAUUUU,UCUUUU,UGUAUU,UUAAGU,UUAUAU,UUAUGU,UUAUUU,UUGUAU,UUUAAU,UUUAUG,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUAUU,ACAUAA,AGAAUU,CAGAAU,GAAUUG,GUACAU,UACAUA,UAUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUCAU,AUCAUU,AUGAUG,AUGAUU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AAAUAA,AUUAAA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RALY 5 1117 0.014285714 0.0056328094 1.342647 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUUUAC,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 AUUCAU,CAUUCA,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 AUUUUU,CAUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUUU UUUUCC,UUUUUC,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AGUUUU,AUUUUA,AUUUUU,CAGUUU,CUUUUA,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHSRP 24 5764 0.059523810 0.0290457477 1.035140 AUAUUU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UGUGUA,UUAUUU,UUGUAU,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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