circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000181163:+:5:171391304:171407774
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000181163:+:5:171391304:171407774 | ENSG00000181163 | ENST00000676625 | + | 5 | 171391305 | 171407774 | 3004 | GUCAGUUUAGGGGCUGGUGCAAAGGAUGAGUUGCACAUUGUUGAAGCAGAGGCAAUGAAUUACGAAGGCAGUCCAAUUAAAGUAACACUGGCAACUUUGAAAAUGUCUGUACAGCCAACGGUUUCCCUUGGGGGCUUUGAAAUAACACCACCAGUGGUCUUAAGGUUGAAGUGUGGUUCAGGGCCAGUGCAUAUUAGUGGACAGCACUUAGUAGCUGUGGAGGAAGAUGCAGAGUCAGAAGAUGAAGAGGAGGAGGAUGUGAAACUCUUAAGUAUAUCUGGAAAGCGGUCUGCCCCUGGAGGUGGUAGCAAGGUUCCACAGAAAAAAGUAAAACUUGCUGCUGAUGAAGAUGAUGACGAUGAUGAUGAAGAGGAUGAUGAUGAAGAUGAUGAUGAUGAUGAUUUUGAUGAUGAGGAAGCUGAAGAAAAAGCGCCAGUGAAGAAAUCUAUACGAGAUACUCCAGCCAAAAAUGCACAAAAGUCAAAUCAGAAUGGAAAAGACUCAAAACCAUCAUCAACACCAAGAUCAAAAGGACAAGAAUCCUUCAAGAAACAGGAAAAAACUCCUAAAACACCAAAAGGACCUAGUUCUGUAGAAGACAUUAAAGCAAAAAUGCAAGCAAGUAUAGAAAAAGUGAGUAAAGUUAUCUUAAAAAAACUUUGUCUCCCCCCUCAAAUUGCACGUGUCUGGUUUGCAUAGACUUGAAUGUUUCUUGUUUUUUUGUUUGUUUUGGUUUAAUAUACUUGCCUGGUUCGUGGUAUGAAUUUUUUCAAAAAUUUCUUAUAAAACAUUUAUAAUCGUGUCUGUGGUGAUUUUUGCAUAUGCAAAAUUAAAUAUGCCUUAUUUUCCAUUAUGCAAGGAACGUAGUGCACUGGUUGCAAGAUAACAUUCUGACCUUCCAUGUUAAAAUAGAUCAGUGAAAACCCUUUGCCUAUUCUGGUUGUAAGAUAUGCUAGAGAACCAACAGAGGGCGUAUGAGACUUCAUUAAAAUUACAAACAGCUGGAAAAGUAGAUGCUGGCUGUUGCUUGGUAUUAUAGUUAAUAUUCAUGAUUGACCCUAGUCAGAAGUGAUUUUCAGCAGAUUGAGACAUUUCUCUUUGCCCUUUACACCAAGUUGUCACCAGUUAAUACAUGUAGUAAUAGCUAGAUUUCGUGAAUGACUAAUAGGCUUAAAUCUAGUUUCCUUUUGUCUUAAAUAAUGGAAAUGUGGGAAGAGGGUUAGGUCUCUCAUCUGCUUGACUGGGGGAUUUGAGUAGGAUAUGGAAUAAAUGGUUUAAAUGCCUUGGAAGCACAUUUGAGAGAAGCUUUAAUUCUAUGAAUAAUACUUUUAGACUCCAACUAUUGAGAGCAAAUGUGGGGUGGUGAAAAAUUGCCAACUCAUUUCCCCAUGUUUUUCUUGUAAUCUAUAGAUUUUUCGUGGCUUCAGUAGAUUCCUUGUACAGUGAUAAGUCCACUGGAAAAAGAAUUUUAGAACUGGAACAUAUUUCUUUUAGUCACACUGUAAACCCUUUAGCCUUCCUGGUUAUCACUGAUUUUUGUCCCUUGGAUACAAUGCUAAAAUGACAUCUUUUAGAUGCCCCUCCCCUCCAUUUUAAUAUGGUCCUAUCUCCUUGGUUUAAUUGCAGGCGCAUUGAACAGUCCUGGGCACUACAUGUAAAUUAAGCCCAAAGAUGGGGAGAAAGGAAAAGGAGAGACAAAUAUAGUCCAUACUGAGUGUCAUCAACAAUCCAGACUGAAGUCUUCUAUUUUAAUCUCAAUCCCCUUUUCUGAUUUGCCACCCAUGCCUCUUCAGGCUGGAAACAAUCUCUUGGUUCCCUAAAGCACUUUCUUCUGACUGCUGUGAUUCAGUGAACCUUGCCCUUUGCUUUCUAUUACUUGUGCAUUUGCCUCACCUGACAAUGUUUUAAAUCGCCUUUGUAUCUCCUUAGCUGCUCAAUAAAUAUUUGAAUGCAUCAAUUAAGAAUGUAUGUGACAAUAAUUUUGAAAUGGAAAUUGUGAGGUUUAUUUUACUAGGUUAUUGGAGGCAGUUAAGUUUCUUAAUGCUAUACCUGAUUCUGCCAAAGUCCCUUGGACAUUUGAAAACCUUUUCAAUCUUUUAAAAAUGCAUAAAAGAUACUUAGAGGGAAAGGUAUUAAUUAAAUUUAGUAAAAACAAAUAUAUUCAAUGCUUUAAAUUCCAAAGUAGUGAUAAAUACAAACAUUUCAAGAUAUUUGCAAUAGUAAUGUUUUGAAAUUUUGGUUACAAAGUCACAGGUCUUGCCAAUACUGUUGUAGUUUCUUGCCUAUAUCCGUAAUUUGAAGGAAAUGGUGAGAGUGAUUAGAGAAGUGUAAUUACUGUAAUUUUUUCCCCUAUUGUAGUUUCUUGCCUGUAUCCAUAAUUUGAAGGAAAUGGUAAGAGUGAUUAGUGAAAUGUAAUUACUGUAAUUUUUUCCCCAUUCAACUUUAUAUAUCUUUAACUGAUGACCAGAUCAUUGUUGUUCUGAACCAGUUUGUGGUCAGCAAGUGUUUUGUGGGGUUUUGUUUGUUUGUUUUUAAAGAACAGUUUGGGUCACUUGACAUGGUUCUCCAAAGGGAUGUUAUGGGUUGUAUUUGGUUCUGGGUGAUAACCGACUUGUUAGAUAAUUUAGAUAAGCAACCGAGUUGCCAUGUUUGUUUGUCGAAUCUCAAGUGUAGCUUAUAUUUUAUGUUCCUAGAGAGGUUGUCAGGGAAGAUUUGACCCUUUGGCAAAUCUGUUUGAAUAGAGAUACUAGCCAUGCUGCCCAAUAGGGCUUUCUGGCCCUGAAAAAGAUACGGAGUAUUCUUGGAAAGUUGAAGGGAAAAAGAAUAAACUGAUCCAUGUAGUAGCAUGCAGAUUAUUGAGGAAUUUUCUAAAGGUAUCUCUCUCGGUGUAUUUCUCUACUUACCUGUAAUAAUGCUUUUGUCUUAAUAGGGUGGUUCUCUUCCCAAAGUGGAAGCCAAAUUCAUCAAUUAUGUGAAGAAUUGCUUCCGGAUGACUGACCAAGAGGUCAGUUUAGGGGCUGGUGCAAAGGAUGAGUUGCACAUUGUUGAAGCAGA | circ |
| ENSG00000181163:+:5:171391304:171407774 | ENSG00000181163 | ENST00000676625 | + | 5 | 171391305 | 171407774 | 22 | CUGACCAAGAGGUCAGUUUAGG | bsj |
| ENSG00000181163:+:5:171391304:171407774 | ENSG00000181163 | ENST00000676625 | + | 5 | 171391105 | 171391314 | 210 | AGGUGUGUGUAGUAGGCUAUACCAUCUAGGUUUGUAUAAGCACAUUCUUAUGAUUGUACAAAGAUGAAAUUGUCUAACAACACAUUUCUCAGAACCUAGCCCUGUGGUUAAGUGACGCAUGGCUGCAUAUAACAUUUAGUGGGGGGGUGUAAAAUAGGUGGAACUCAAAAGUUGAAGUAGUAUUUUUUUUUUGUUCACAGGUCAGUUUAG | ie_up |
| ENSG00000181163:+:5:171391304:171407774 | ENSG00000181163 | ENST00000676625 | + | 5 | 171407765 | 171407974 | 210 | UGACCAAGAGGUAACUGGAUUUUCUGGGGACAUGAUUAAAUCCAAGUUUUUUUGUGAUUUAUUAUGAUUCUGCCUUUACCCUUUUUAAGUGUUGGCUCUUUUUAAAAAGUUCCUAACCACAGAUAAUAUUUCAUUUAAUGAAAUACCUGAAAACUCAUGUAUUUAAUGAAAUGCAUGAAGAAUACAGUUGGCAGUCUGAGAUGAUAACUU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| OAS1 | 1 | 77 | 0.000665779 | 0.0001130379 | 2.558237 | GCAUAA | GCAUAA |
| TUT1 | 11 | 678 | 0.003994674 | 0.0009840095 | 2.021334 | AAAUAC,AAUACU,AGAUAC,CAAUAC,GAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| HNRNPA1L2 | 4 | 314 | 0.001664447 | 0.0004564992 | 1.866359 | AUAGGG,UAGGGU,UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| RBM28 | 11 | 822 | 0.003994674 | 0.0011926949 | 1.743853 | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| HNRNPA0 | 5 | 453 | 0.001997337 | 0.0006579386 | 1.602053 | AAUUUA,AGAUAU,AGUAGG | AAUUUA,AGAUAU,AGUAGG |
| ESRP1 | 1 | 156 | 0.000665779 | 0.0002275250 | 1.549018 | AGGGAU | AGGGAU |
| RBMS3 | 14 | 1283 | 0.004993342 | 0.0018607779 | 1.424100 | AAUAUA,AUAUAG,AUAUAU,CUAUAG,CUAUAU,UAUAGA,UAUAUA,UAUAUC | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| ELAVL1 | 59 | 5554 | 0.019973369 | 0.0080503280 | 1.310958 | AUUUAU,CCCCCC,UAGUUU,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAUUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| ZCRB1 | 15 | 1605 | 0.005326232 | 0.0023274215 | 1.194383 | AAUUAA,GAAUUA,GCUUAA,GGCUUA,GGUUUA,GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| A1CF | 15 | 1642 | 0.005326232 | 0.0023810421 | 1.161522 | AGUAUA,AUAAUU,AUCAGU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UUAAUU | AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU |
| PABPC3 | 11 | 1234 | 0.003994674 | 0.0017897669 | 1.158306 | AAAAAC,AAAACA,AAAACC,GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| PPIE | 176 | 18315 | 0.058921438 | 0.0265436196 | 1.150428 | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU | AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU |
| CSTF2 | 18 | 1967 | 0.006324900 | 0.0028520334 | 1.149052 | GUGUUU,GUUUUG,UGUUUG,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| U2AF2 | 13 | 1477 | 0.004660453 | 0.0021419234 | 1.121563 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| AKAP1 | 3 | 426 | 0.001331558 | 0.0006188101 | 1.105547 | AUAUAU,UAUAUA | AUAUAU,UAUAUA |
| PUM1 | 53 | 5823 | 0.017976032 | 0.0084401638 | 1.090732 | AAUAUU,AAUGUU,AAUUGU,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUAGAU,GUAUAU,UAAAUA,UAAUAU,UAAUGU,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UUAAUG,UUGUAC,UUGUAG,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| RBM46 | 41 | 4554 | 0.013981358 | 0.0066011240 | 1.082721 | AAUGAA,AUCAAA,AUCAAU,AUCAUU,AUGAAG,AUGAAU,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| RALY | 13 | 1553 | 0.004660453 | 0.0022520629 | 1.049223 | UUUUUC,UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| PUM2 | 16 | 1890 | 0.005659121 | 0.0027404447 | 1.046168 | GUAAAU,GUAGAU,GUAUAU,UAAAUA,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| TIAL1 | 90 | 10182 | 0.030292943 | 0.0147572438 | 1.037558 | AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| RBFOX2 | 3 | 452 | 0.001331558 | 0.0006564894 | 1.020272 | UGACUG | UGACUG,UGCAUG |
| PABPC4 | 10 | 1251 | 0.003661784 | 0.0018144033 | 1.013052 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| ELAVL2 | 161 | 18468 | 0.053928096 | 0.0267653478 | 1.010671 | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,GAUUUU,GUUUUA,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGUAU,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| KHDRBS3 | 29 | 3429 | 0.009986684 | 0.0049707696 | 1.006537 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| SSB | 10 | 1260 | 0.003661784 | 0.0018274462 | 1.002718 | CUGUUU,GCUGUU,UGCUGU,UGUUUU | CUGUUU,GCUGUU,UGCUGU,UGUUUU |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| TRA2A | 1 | 54 | 0.09090909 | 0.003602305 | 4.657432 | AAGAGG | AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| SFPQ | 2 | 153 | 0.13636364 | 0.010086455 | 3.756968 | AAGAGG,AGAGGU | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.007859576 | 3.531901 | AAGAGG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF10 | 1 | 160 | 0.09090909 | 0.010544931 | 3.107875 | AAGAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF2 | 2 | 479 | 0.13636364 | 0.031438302 | 2.116864 | AGAGGU,GGUCAG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 2 | 625 | 0.13636364 | 0.041000786 | 1.733736 | AAGAGG,AGAGGU | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| RBFOX2 | 1 | 124 | 0.004761905 | 0.0006297864 | 2.918604 | UGCAUG | UGACUG,UGCAUG |
| RBM6 | 2 | 191 | 0.007142857 | 0.0009673519 | 2.884389 | AAUCCA,AUCCAA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| RBM28 | 4 | 340 | 0.011904762 | 0.0017180572 | 2.792689 | AGUAGG,AGUAGU,GUGUAG,UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| AGO1 | 3 | 283 | 0.009523810 | 0.0014308746 | 2.734641 | GAGGUA,GUAGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| HNRNPM | 2 | 222 | 0.007142857 | 0.0011235389 | 2.668451 | GGGGGG | AAGGAA,GAAGGA,GGGGGG |
| RBM46 | 12 | 1091 | 0.030952381 | 0.0055018138 | 2.492071 | AAUGAA,AUGAAA,AUGAAG,AUGAUA,AUGAUU,GAUGAA,GAUGAU | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| CPEB4 | 7 | 691 | 0.019047619 | 0.0034864974 | 2.449760 | UUUUUU | UUUUUU |
| DDX19B | 7 | 691 | 0.019047619 | 0.0034864974 | 2.449760 | UUUUUU | UUUUUU |
| EIF4A3 | 7 | 691 | 0.019047619 | 0.0034864974 | 2.449760 | UUUUUU | UUUUUU |
| IGF2BP1 | 1 | 173 | 0.004761905 | 0.0008766626 | 2.441445 | AAGCAC | AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC |
| YBX2 | 2 | 263 | 0.007142857 | 0.0013301088 | 2.424957 | AACAAC,ACAACA | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| RBFOX1 | 2 | 287 | 0.007142857 | 0.0014510278 | 2.299426 | GCAUGA,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| HNRNPA0 | 1 | 200 | 0.004761905 | 0.0010126965 | 2.233337 | AGUAGG | AAUUUA,AGAUAU,AGUAGG |
| HNRNPCL1 | 12 | 1381 | 0.030952381 | 0.0069629182 | 2.152286 | AUUUUU,CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| RALY | 9 | 1117 | 0.023809524 | 0.0056328094 | 2.079612 | UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| HNRNPU | 9 | 1136 | 0.023809524 | 0.0057285369 | 2.055300 | GGGGGG,UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| TUT1 | 1 | 230 | 0.004761905 | 0.0011638452 | 2.032640 | AAAUAC | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| HNRNPAB | 2 | 351 | 0.007142857 | 0.0017734784 | 2.009919 | ACAAAG,CAAAGA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| HNRNPC | 16 | 2006 | 0.040476190 | 0.0101118501 | 2.001027 | AUUUUU,CUUUUU,GGGGGG,UUUUUA,UUUUUG,UUUUUU | AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| CPEB2 | 11 | 1487 | 0.028571429 | 0.0074969770 | 1.930192 | AUUUUU,CCUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| CELF4 | 5 | 776 | 0.014285714 | 0.0039147521 | 1.867580 | GGUGUG,GUGUGU,GUGUUG,UGUGUG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| NOVA1 | 10 | 1428 | 0.026190476 | 0.0071997179 | 1.863030 | GGGGGG,UUCAUU,UUUUUU | AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU |
| SYNCRIP | 7 | 1041 | 0.019047619 | 0.0052498992 | 1.859249 | UUUUUU | AAAAAA,UUUUUU |
| KHDRBS2 | 7 | 1051 | 0.019047619 | 0.0053002821 | 1.845470 | UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| ZCRB1 | 4 | 666 | 0.011904762 | 0.0033605401 | 1.824774 | AUUUAA,GAUUAA,GAUUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| CELF5 | 4 | 669 | 0.011904762 | 0.0033756550 | 1.818299 | GUGUGU,GUGUUG,UGUGUG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| U2AF2 | 7 | 1071 | 0.019047619 | 0.0054010480 | 1.818299 | UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| KHDRBS1 | 13 | 1945 | 0.033333333 | 0.0098045143 | 1.765448 | AUUUAA,GAAAAC,UAAAAA,UUAAAA,UUAAAU,UUUUUU | AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU |
| NOVA2 | 9 | 1434 | 0.023809524 | 0.0072299476 | 1.719482 | GGGGGG,UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| PUM1 | 13 | 2172 | 0.033333333 | 0.0109482064 | 1.606271 | AAUAUU,AAUUGU,AGAUAA,AUUGUA,UAAUAU,UGUAAA,UGUACA,UGUAUA,UUAAUG,UUGUAC,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| PABPC3 | 1 | 310 | 0.004761905 | 0.0015669085 | 1.603618 | GAAAAC | AAAAAC,AAAACA,AAAACC,GAAAAC |
| FUS | 10 | 1711 | 0.026190476 | 0.0086255542 | 1.602353 | GGGGGG,GGGUGU,UUUUUU | AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU |
| MSI1 | 5 | 961 | 0.014285714 | 0.0048468360 | 1.559458 | AGGUGG,AGUAGG,AGUUGG,UAGGUG,UAGUAG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| ELAVL3 | 11 | 1928 | 0.028571429 | 0.0097188634 | 1.555714 | AUUUAU,UAUUUA,UAUUUU,UUUAUU,UUUUUU | AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU |
| KHDRBS3 | 9 | 1646 | 0.023809524 | 0.0082980653 | 1.520692 | AGAUAA,AUUAAA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| IGF2BP3 | 7 | 1348 | 0.019047619 | 0.0067966546 | 1.486714 | AAACUC,AAAUAC,AACACA,AACUCA,AAUACA,ACAUUC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| IGF2BP2 | 11 | 2163 | 0.028571429 | 0.0109028617 | 1.389866 | AAACUC,AAAUAC,AACACA,AACUCA,AAUACA,ACAUUC,CAACAC,GAAAAC,GAACUC,GAAUAC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| ELAVL4 | 15 | 2916 | 0.038095238 | 0.0146966949 | 1.374119 | AUUUAU,UAUUUA,UAUUUU,UUGUAU,UUUAUU,UUUGUA,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| CELF1 | 5 | 1097 | 0.014285714 | 0.0055320435 | 1.368689 | GUGUGU,GUGUUG,GUUUGU,UGUGUG | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ENOX1 | 3 | 756 | 0.009523810 | 0.0038139863 | 1.320239 | AAUACA,AUACAG,UGUACA | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| PUM2 | 3 | 764 | 0.009523810 | 0.0038542926 | 1.305073 | UGUAAA,UGUACA,UGUAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| DAZAP1 | 14 | 2878 | 0.035714286 | 0.0145052398 | 1.299927 | AGGUAA,AGUAGG,AGUUUA,GGGGGG,UAGGUU,UAGUAU,UUUUUU | AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU |
| ZFP36L2 | 3 | 774 | 0.009523810 | 0.0039046755 | 1.286336 | AUUUAU,UAUUUA,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| ELAVL1 | 16 | 3309 | 0.040476190 | 0.0166767432 | 1.279236 | AUUUAU,UAUUUA,UAUUUU,UGAUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG,UUUUUU | AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU |
| CELF6 | 5 | 1196 | 0.014285714 | 0.0060308343 | 1.244144 | GUGGGG,GUGUUG,UGUGAU,UGUGGU,UGUGUG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| CSTF2 | 4 | 1022 | 0.011904762 | 0.0051541717 | 1.207726 | GUGUGU,GUGUUG,UGUGUG | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| TARDBP | 4 | 1034 | 0.011904762 | 0.0052146312 | 1.190902 | GUGUGU,UGUGUG,UUGUUC | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| TIAL1 | 25 | 5597 | 0.061904762 | 0.0282043531 | 1.134133 | AGUUUU,AUUUUC,AUUUUU,CAGUUU,CUUUUU,GUUUUU,UAUUUU,UCAGUU,UUAAAU,UUUAAA,UUUAUU,UUUUAA,UUUUUA,UUUUUG,UUUUUU | AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| CELF2 | 3 | 881 | 0.009523810 | 0.0044437727 | 1.099754 | GUGUGU,UGUGUG | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| RBM24 | 3 | 888 | 0.009523810 | 0.0044790407 | 1.088349 | GUGUGU,UGUGUG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| ELAVL2 | 43 | 9826 | 0.104761905 | 0.0495112858 | 1.081285 | AUAUUU,AUUUAA,AUUUAG,AUUUAU,AUUUUC,AUUUUU,CUUUUU,GAUUUA,GAUUUU,GUUUUU,UAUUAU,UAUUUA,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUCAUU,UUGUAU,UUUAAG,UUUAAU,UUUAGU,UUUAUU,UUUCAU,UUUUAA,UUUUUA,UUUUUG,UUUUUU | AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
| QKI | 3 | 904 | 0.009523810 | 0.0045596534 | 1.062615 | ACUCAU,CUAACA,CUAACC | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| PABPC4 | 1 | 462 | 0.004761905 | 0.0023327287 | 1.029520 | AAAAAG | AAAAAA,AAAAAG |
| TIA1 | 21 | 5140 | 0.052380952 | 0.0259018541 | 1.015987 | AUUUUC,AUUUUU,CUUUUU,GUUUUU,UAUUUU,UUUAUU,UUUUCU,UUUUGU,UUUUUA,UUUUUG,UUUUUU | AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.