ENSG00000169402:+:7:6759083:6768766

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169402:+:7:6759083:6768766 ENSG00000169402 ENST00000403107 + 7 6759084 6768766 703 CUAUGAAGGGGAAAAGGUUCGUGGGCUGUAUGAGGGAGAAGGCUUCGCAGCCUUUCAAGGCGGUUGUACCUAUCGUGGUAUGUUUUCAGAAGGACUCAUGCAUGGACAGGGGACUUAUAUUUGGGCCGAUGGAUUAAAAUAUGAGGGCGACUUUGUGAAGAAUGUCCCGAUGAACCACGGCGUGUACACGUGGCCGGACGGCAGCAUGUAUGAAGGCGAAGUGGUCAACGGCAUGAGGAACGGAUUCGGGAUGUUCAAGUGCAGCACCCAGCCUGUGUCCUACAUCGGCCACUGGUGCAAUGGCAAGCGGCACGGGAAGGGCUCCAUUUAUUACAAUCAAGAGGGUACGUGUUGGUACGAGGGAGACUGGGUACAAAACAUCAAAAAGGGCUGGGGAAUAAGAUGUUAUAAAUCUGGAAAUAUAUACGAAGGCCAGUGGGAAGACAACAUGCGCCACGGGGAGGGGAGGAUGAGGUGGCUGACCACCAACGAAGAGUACACCGGGCGGUGGGAGAGGGGCAUCCAGAAUGGCUUUGGAACACACACAUGGUUUCUAAAGAGAAUCCGCAGUUCCCAGUAUCCUUUGAGAAAUGAAUACAUAGGGGAGUUUGUAAAUGGAUAUCGUCACGGACGUGGCAAGUUUUAUUAUGCCAGUGGAGCCAUGUAUGAUGGAGAAUGGGUUUCCAAUAAGAAACAUGGCAUGCUAUGAAGGGGAAAAGGUUCGUGGGCUGUAUGAGGGAGAAGGCUUCGCAG circ
ENSG00000169402:+:7:6759083:6768766 ENSG00000169402 ENST00000403107 + 7 6759084 6768766 22 AACAUGGCAUGCUAUGAAGGGG bsj
ENSG00000169402:+:7:6759083:6768766 ENSG00000169402 ENST00000403107 + 7 6758884 6759093 210 GAAAUGCCUUCAUUCCUCACCCUACUUUCAAACCCCUGGUAACCUCUUCUACUUUCUAGCUCUGUGUAUAUAUAUAUAUAUAUAUAUUUUUUUUUUUUCUGACUUCAUUCUUCCCAUUACAUAGUUAUAUAGUUUAACCCACUGUCACUUGGGUUUAUUCACAUUGUUCAUUACCUUGAAUUACCUUUAUUUCUUUGUAGCUAUGAAGGG ie_up
ENSG00000169402:+:7:6759083:6768766 ENSG00000169402 ENST00000403107 + 7 6768757 6768966 210 ACAUGGCAUGGUGAGUAUAGACCUGGGAGGAUCACAUUUCAAACAAUUAUGUAAAGCCAUUGAAAUUAUGUAAAGCAAUUGAAAUGUCCAAGGAUAAUUGCAGAUUUGUCUAUUCUGCUUUCAGAUCUAUCAGUUUUGAUUCAAAUAUUUGAAGCUUUGUUAGGUGCAUAUACAUUGAGGAUUAUUCUGUAUUGGUGCAUUGGCUCUUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 2 426 0.004267425 0.0006188101 2.785797 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPA1L2 1 314 0.002844950 0.0004564992 2.639719 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBMS1 2 497 0.004267425 0.0007217036 2.563888 AUAUAC,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ESRP2 11 2150 0.017069701 0.0031172377 2.453098 GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBFOX1 5 1077 0.008534851 0.0015622419 2.449748 AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM8A 2 611 0.004267425 0.0008869128 2.266502 AUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SNRNP70 5 1237 0.008534851 0.0017941145 2.250094 AAUCAA,AUCAAG,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ERI1 2 632 0.004267425 0.0009173461 2.217828 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX2 1 452 0.002844950 0.0006564894 2.115560 UGCAUG UGACUG,UGCAUG
PUM2 6 1890 0.009957326 0.0027404447 1.861348 GUAAAU,UACAUA,UACAUC,UAUAUA,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
AGO1 1 548 0.002844950 0.0007956130 1.838265 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
IGF2BP1 2 831 0.004267425 0.0012057377 1.823450 AGCACC,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPF 35 10561 0.051209104 0.0153064921 1.742257 AAGGCG,AAGGGG,AGGCGA,AGGGGA,CGAUGG,CGGGAU,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,UGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH2 32 9711 0.046941679 0.0140746688 1.737768 AAGGCG,AAGGGG,AGGCGA,AGGGGA,CGAGGG,CGGGCG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCUG,GGGGAA,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZNF638 5 1773 0.008534851 0.0025708878 1.731099 GGUUCG,GGUUGU,GUUCGU,GUUGGU,UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX2 4 1480 0.007112376 0.0021462711 1.728499 AACAUC,ACAACA,ACAUCA,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPH3 24 7688 0.035561878 0.0111429292 1.674203 AGGGGA,CGAGGG,CGGGCG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCUG,GGGGAG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 33 10717 0.048364154 0.0155325680 1.638642 AAGGCG,AAGGGG,AGGCGA,AGGGGA,CGAGGG,CGGGCG,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCUG,GGGGAA,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZFP36L2 3 1277 0.005689900 0.0018520827 1.619255 AUUUAU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS3 3 1283 0.005689900 0.0018607779 1.612498 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM6 2 1054 0.004267425 0.0015289102 1.480862 AUCCAG,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
NONO 3 1498 0.005689900 0.0021723567 1.389142 AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
ZCRB1 3 1605 0.005689900 0.0023274215 1.289671 GACUUA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
G3BP2 3 1644 0.005689900 0.0023839405 1.255055 AGGAUG,GGAUGA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SRP14 1 847 0.002844950 0.0012289250 1.211007 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ACO1 2 1283 0.004267425 0.0018607779 1.197460 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
IFIH1 1 904 0.002844950 0.0013115296 1.117153 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM46 9 4554 0.014224751 0.0066011240 1.107620 AAUCAA,AAUGAA,AUCAAA,AUCAAG,AUGAAG,AUGAAU,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ENOX1 6 3195 0.009957326 0.0046316558 1.104230 AAGACA,AAUACA,AGUACA,GGACAG,UGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
IGF2BP3 9 4815 0.014224751 0.0069793662 1.027235 AAAACA,AACACA,AAUACA,ACAAUC,ACACAC,CAAUCA,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX1 1 5 0.09090909 0.0003929788 7.853829 GCAUGC AGCAUG,GCAUGU,UGACUG,UGCAUG
YTHDC1 1 20 0.09090909 0.0013754257 6.046474 GCAUGC GAAUAC,GAGUAC,GCCUGC,GGCUGC,GGGUAC,UAAUAC,UAAUGC,UCAUAC,UCCUGC,UCGUGC,UGAUAC,UGCUGC,UGGUGC
FMR1 1 117 0.09090909 0.0077285827 3.556149 GCUAUG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 17 221 0.042857143 0.001118501 5.259898 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 11 217 0.028571429 0.001098347 4.701167 AUAUAC,AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 20 562 0.050000000 0.002836558 4.139715 AUAUAG,AUAUAU,CAUAUA,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 14 764 0.035714286 0.003854293 3.211963 GUAUAU,UACAUA,UAUAUA,UGUAAA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SNRPB2 3 288 0.009523810 0.001456066 2.709463 AUUGCA,GUAUUG,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
ERI1 2 228 0.007142857 0.001153769 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM41 5 502 0.014285714 0.002534260 2.494937 AUACAU,UACAUU,UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
CPEB4 7 691 0.019047619 0.003486497 2.449760 UUUUUU UUUUUU
DDX19B 7 691 0.019047619 0.003486497 2.449760 UUUUUU UUUUUU
EIF4A3 7 691 0.019047619 0.003486497 2.449760 UUUUUU UUUUUU
G3BP2 4 490 0.011904762 0.002473801 2.266737 AGGAUA,AGGAUU,GGAUAA,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
NOVA1 12 1428 0.030952381 0.007199718 2.104038 UCAUUC,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
HNRNPA3 2 349 0.007142857 0.001763402 2.018140 CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
U2AF2 8 1071 0.021428571 0.005401048 1.988224 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
A1CF 4 598 0.011904762 0.003017936 1.979904 AGUAUA,AUAAUU,AUCAGU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM1 17 2172 0.042857143 0.010948206 1.968841 AAUAUU,GUAUAU,UACAUA,UAUAUA,UGUAAA,UGUAUA,UGUCCA,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RALY 8 1117 0.021428571 0.005632809 1.927609 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SYNCRIP 7 1041 0.019047619 0.005249899 1.859249 UUUUUU AAAAAA,UUUUUU
KHDRBS2 7 1051 0.019047619 0.005300282 1.845470 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ZCRB1 4 666 0.011904762 0.003360540 1.824774 GAAUUA,GGAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPU 7 1136 0.019047619 0.005728537 1.733372 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPCL1 8 1381 0.021428571 0.006962918 1.621772 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 8 1434 0.021428571 0.007229948 1.567479 GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ELAVL3 11 1928 0.028571429 0.009718863 1.555714 UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
CPEB2 8 1487 0.021428571 0.007496977 1.515155 AUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
FUS 8 1711 0.021428571 0.008625554 1.312847 UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
ZFP36L2 3 774 0.009523810 0.003904676 1.286336 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPC 9 2006 0.023809524 0.010111850 1.235492 AUUUUU,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS3 7 1646 0.019047619 0.008298065 1.198764 UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RC3H1 2 631 0.007142857 0.003184200 1.165570 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL2 44 9826 0.107142857 0.049511286 1.113706 AUAUUU,AUUAUU,AUUUUU,CUUUCU,GUAUUG,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUUUG,UAUUUU,UCUUUU,UGUAUU,UUAUAU,UUAUGU,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUUAUU,UUUCUU,UUUGAU,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 14 3309 0.035714286 0.016676743 1.098664 UAGUUU,UAUUUU,UUAUUU,UUGAUU,UUUAUU,UUUGUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
DAZAP1 12 2878 0.030952381 0.014505240 1.093476 AGGAUA,AGUAUA,AGUUUA,UAGUUA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 12 2916 0.030952381 0.014696695 1.074559 UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PPIE 40 9262 0.097619048 0.046669690 1.064677 AAAUAU,AAAUUA,AAUAUU,AAUUAU,AUAAUU,AUAUAU,AUAUUU,AUUAUU,AUUUUU,UAUAUA,UAUAUU,UAUUUU,UUAUAU,UUAUUU,UUUAUU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PCBP2 17 4164 0.042857143 0.020984482 1.030213 AAAUUA,AAUUAC,ACCCUA,AUUACC,AUUCAC,CAAUUA,CCAUUA,CUUCCC,UAACCC,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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