ENSG00000131018:-:6:152201823:152215060

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000131018:-:6:152201823:152215060 ENSG00000131018 ENST00000367255 - 6 152201824 152215060 954 GGACAGAUGUUAAAAUUCAGCAGCAUGGCUCCAGAUUUAGACCGUCUAAAUGAGCUUGGAUAUAGGUUACCCUUGAAUGAUAAGGAAAUCAAAAGAAUGCAGAAUCUGAACCGCCAUUGGUCUCUGAUCUCCUCUCAGACUACAGAAAGAUUCAGCAAGUUGCAGUCAUUUUUGCUACAACAUCAGACUUUCUUGGAAAAAUGUGAAACAUGGAUGGAAUUCCUAGUUCAGACAGAACAAAAGUUAGCAGUAGAGAUUUCAGGAAAUUAUCAGCACCUUUUGGAACAGCAGAGAGCACACGAGUUGUUUCAAGCCGAGAUGUUCAGUCGUCAGCAGAUUUUGCACUCAAUCAUUAUUGAUGGGCAACGUCUUCUAGAACAAGGUCAAGUUGAUGACAGGGAUGAAUUCAACCUGAAAUUGACACUCCUCAGUAAUCAAUGGCAGGGAGUGAUUCGCAGGGCCCAGCAGAGGCGGGGGAUCAUUGACAGCCAGAUUCGCCAGUGGCAGCGCUAUAGGGAGAUGGCAGAAAAGCUUCGUAAAUGGUUGGUUGAAGUGUCCUACCUCCCCAUGAGUGGUCUCGGAAGUGUUCCUAUACCACUGCAACAAGCAAGGACCCUCUUUGAUGAAGUGCAGUUCAAAGAAAAAGUGUUUCUGCGGCAACAAGGCAGCUACAUCCUGACUGUGGAGGCUGGCAAGCAACUCCUUCUCUCGGCGGACAGUGGCGCUGAGGCCGCCUUGCAGGCCGAACUCGCUGAAAUCCAAGAGAAAUGGAAAUCAGCCAGCAUGCGGCUGGAAGAACAGAAGAAAAAACUAGCCUUCUUGUUGAAAGACUGGGAAAAAUGUGAGAAAGGAAUAGCAGAUUCCCUGGAGAAACUACGAACUUUCAAAAAGAAGCUUUCGCAGUCUCUCCCGGAUCACCAUGAAGAGCUCCAUGCAGAACAAAUGCGUUGCAAGGGACAGAUGUUAAAAUUCAGCAGCAUGGCUCCAGAUUUAGACCGUCUAAA circ
ENSG00000131018:-:6:152201823:152215060 ENSG00000131018 ENST00000367255 - 6 152201824 152215060 22 UGCGUUGCAAGGGACAGAUGUU bsj
ENSG00000131018:-:6:152201823:152215060 ENSG00000131018 ENST00000367255 - 6 152215051 152215260 210 GCAGCAGCAGUUUAGACUGAAAAGUAGAUUUGGCUUUUCGCUAUUCGUACCUAGAGAUUGUAAGUAAGUGGCCUAGAAAUGCAGAGGCCACUAGACCGAAGACCAGCUACUUCCUGAAAUCAGAAAUUCACUGCGCACUUUGAAAAAGUUUUGACUUUUUUGACCAUGGUGCUAAACCUACUUUUAAAUCUUCCUUCUAGGGACAGAUGU ie_up
ENSG00000131018:-:6:152201823:152215060 ENSG00000131018 ENST00000367255 - 6 152201624 152201833 210 GCGUUGCAAGGUAAAUUACUGAACUGAGAUUUUCACCGUCACCUGUGUGCCUCUGCUGGAAUGUCUUUGGGGCCAUAAUCCAGUCAAACUCUUAGGUUAUCUACAUGCAGAUACAAGAUCCUAGUAUAUGACAUAAGGACAGGCAACUCAGGUGAAACUUGUAUGGCUGAUUUAUUGCAGUUGAUGAAAUUAUAGACUAGUUUAUGGAUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 156 0.002096436 0.0002275250 3.203842 AGGGAU AGGGAU
CNOT4 2 314 0.003144654 0.0004564992 2.784217 GACAGA GACAGA
HNRNPA1L2 2 314 0.003144654 0.0004564992 2.784217 AUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM42 2 407 0.003144654 0.0005912752 2.411000 AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
NXF1 1 286 0.002096436 0.0004159215 2.333556 AACCUG AACCUG
RBMS1 2 497 0.003144654 0.0007217036 2.123423 AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
EIF4B 6 1179 0.007337526 0.0017100607 2.101246 CUCGGA,CUUGGA,UCGGAA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SNRPB2 4 991 0.005241090 0.0014376103 1.866194 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
FXR1 1 411 0.002096436 0.0005970720 1.811962 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
SNRNP70 5 1237 0.006289308 0.0017941145 1.809629 AAUCAA,AUUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ERI1 2 632 0.003144654 0.0009173461 1.777363 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX1 4 1077 0.005241090 0.0015622419 1.746249 AGCAUG,GCAUGC,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBFOX2 1 452 0.002096436 0.0006564894 1.675095 UGACUG UGACUG,UGCAUG
SART3 9 2634 0.010482180 0.0038186524 1.456803 AAAAAA,AAAAAC,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC5 8 2400 0.009433962 0.0034795387 1.438968 AGAAAA,AGAAAG,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM46 15 4554 0.016771488 0.0066011240 1.345227 AAUCAA,AAUCAU,AAUGAU,AUCAAA,AUCAAU,AUCAUU,AUGAAG,AUGAAU,AUGAUA,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPN1 3 1222 0.004192872 0.0017723764 1.242254 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBM3 6 2152 0.007337526 0.0031201361 1.233685 AAAACU,AAACUA,AAGACU,AGACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PABPC4 3 1251 0.004192872 0.0018144033 1.208444 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPM 2 999 0.003144654 0.0014492040 1.117641 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM4 8 3065 0.009433962 0.0044432593 1.086245 CCUCUU,CCUUCU,CUCUUU,CUUCUU,UCCUUC,UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SRSF11 1 688 0.002096436 0.0009985015 1.070102 AAGAAG AAGAAG
ZC3H10 2 1053 0.003144654 0.0015274610 1.041766 CAGCGC,GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM6 2 1054 0.003144654 0.0015289102 1.040398 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA2B1 1 49 0.09090909 0.003274823 4.794936 CAAGGG AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
RBM5 1 56 0.09090909 0.003733298 4.605902 CAAGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPH3 1 61 0.09090909 0.004060781 4.484596 AAGGGA AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
HNRNPH2 1 80 0.09090909 0.005305214 4.098942 AAGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPF 1 90 0.09090909 0.005960178 3.930997 AAGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 1 90 0.09090909 0.005960178 3.930997 AAGGGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
FMR1 1 117 0.09090909 0.007728583 3.556149 AAGGGA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AGGGAC AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SFPQ 1 153 0.09090909 0.010086455 3.172005 AAGGGA AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
SRSF10 1 160 0.09090909 0.010544931 3.107875 AAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 ACAAGA ACAAGA,CAAGAC
SNRPB2 4 288 0.011904762 0.0014560661 3.031391 AUUGCA,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAGA,GACAGG,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACAUG,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AGACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM4 5 1094 0.014285714 0.0055169287 1.372636 CCUUCU,CUUCCU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGGACA,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,GUAGAU,GUAUAU GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAACUC,AAAUCA,AAAUUC,AACUCA,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 ACUAGA,AGACUA,CUAGAC,GACUAG,GGGGCC,UAGACU,UAGGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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