ENSG00000169379:+:3:93995873:94003908

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169379:+:3:93995873:94003908 ENSG00000169379 ENST00000679872 + 3 93995874 94003908 321 AAAGGUGACUCUUUUGAUGGUGGGACUUGAUAAUGCUGGUAAAACCGCAACAGCAAAGGGAAUCCAAGGAGAAUACCCUGAAGAUGUAGCUCCUACUGUUGGAUUUUCAAAAAUUAACCUUAGACAAGGAAAGUUUGAAGUCACCAUCUUUGACUUGGGAGGUGGAAUAAGAAUUCGGGGAAUCUGGAAGAAUUACUAUGCUGAAUCCUAUGGGGUAAUAUUUGUUGUGGAUUCCAGUGAUGAAGAGAGAAUGGAAGAGACAAAAGAGGCUAUGUCAGAAAUGCUAAGACAUCCUAGGAUAUCGGGAAAGCCUAUAUUGGUAAAGGUGACUCUUUUGAUGGUGGGACUUGAUAAUGCUGGUAAAACCGCAA circ
ENSG00000169379:+:3:93995873:94003908 ENSG00000169379 ENST00000679872 + 3 93995874 94003908 22 CCUAUAUUGGUAAAGGUGACUC bsj
ENSG00000169379:+:3:93995873:94003908 ENSG00000169379 ENST00000679872 + 3 93995674 93995883 210 GAUGAUCCUUUAAAGGUAUUUUUCAUGAAUUUGCUUUUGAAUCUAUAUUUUAUUCAUCAUUGUACUCCCUAGCAUCCAACAGAUUUUCUUGUGCUUAAUAGGUGCUCCUUAAAUGUUGAUUUAAUUAAUGAAUUUGCAUUUAUUUUUCCUCAAUACUAAAUUAACAAAGAAAGUGAUUUUUAAAUUUCUAUUAUUUUAAGAAAGGUGACU ie_up
ENSG00000169379:+:3:93995873:94003908 ENSG00000169379 ENST00000679872 + 3 94003899 94004108 210 CUAUAUUGGUGUAAGUAAUGUUAGCAUCAUUGUAAAUGUAGGGACGAUGGCAUUGGCCACUAAAGAAAUUUACCUGUUACAGACUAGUGAAUAAGCUAAAAUAGUCACGCUUUAGUAUACUAAAAUGUAUGUAAUUAACUGGGAGUUGUUAAUUUACUGAGGCCUUGUUAUAGUGCUGUCUAUAGGGGAAAAGGGCUAAGGCUAUAGAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 1 268 0.006230530 0.0003898359 3.998416 AUCGGG AUCGGG,CGGGCA,UCGGGC
ZRANB2 10 3173 0.034267913 0.0045997733 2.897224 AAAGGU,AGGGAA,GGGUAA,GGUAAA,GUAAAG,UAAAGG,UGGUAA,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM6 2 1054 0.009345794 0.0015289102 2.611814 AAUCCA,AUCCAA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPAB 4 1782 0.015576324 0.0025839306 2.591716 AAGACA,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
MATR3 1 739 0.006230530 0.0010724109 2.538497 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPA3 4 2140 0.015576324 0.0031027457 2.327737 AAGGAG,CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 4 2150 0.015576324 0.0031172377 2.321015 GGGAAA,GGGAAU,GGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPM 1 999 0.006230530 0.0014492040 2.104094 AAGGAA AAGGAA,GAAGGA,GGGGGG
ZCRB1 2 1605 0.009345794 0.0023274215 2.005585 AAUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
EIF4B 1 1179 0.006230530 0.0017100607 1.865307 GUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZNF638 2 1773 0.009345794 0.0025708878 1.862051 UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPN1 1 1222 0.006230530 0.0017723764 1.813670 AAAAGA AAAAGA,AGAAGA
PABPC3 1 1234 0.006230530 0.0017897669 1.799583 AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 1283 0.006230530 0.0018607779 1.743449 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 1 1283 0.006230530 0.0018607779 1.743449 CUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
FXR2 4 3434 0.015576324 0.0049780156 1.645712 AGACAA,GACAAA,GACAAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
SRSF10 18 13860 0.059190031 0.0200874160 1.559062 AAAAGA,AAAGAG,AAAGGG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AGACAA,AGAGAA,AGAGAC,AGAGAG,GACAAA,GAGACA,GAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
TRA2B 9 7329 0.031152648 0.0106226650 1.552209 AAGAAU,AAGGAA,AAUAAG,AGGAAA,AUAAGA,GAAGAA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
CELF1 2 2391 0.009345794 0.0034664959 1.430839 GUUGUG,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SAMD4A 4 3992 0.015576324 0.0057866714 1.428549 CGGGAA,CUGGAA,CUGGUA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
PABPC5 2 2400 0.009345794 0.0034795387 1.425421 AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
G3BP2 1 1644 0.006230530 0.0023839405 1.386007 AGGAUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TARDBP 2 2654 0.009345794 0.0038476365 1.280345 GAAUGG,GUUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SRSF4 3 3740 0.012461059 0.0054214720 1.200670 GAAGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
QKI 2 2805 0.009345794 0.0040664663 1.200542 AUUAAC,UAACCU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
CELF2 1 1886 0.006230530 0.0027346479 1.188000 UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPF 10 10561 0.034267913 0.0153064921 1.162715 AAGGGA,AAGGUG,AGGGAA,AUGGGG,GGGAAU,GGGAGG,GGGGAA,GGGGUA,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH3 7 7688 0.024922118 0.0111429292 1.161298 AAGGGA,AAGGUG,AGGGAA,AUCGGG,GGGAAU,GGGAGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
PUM1 5 5823 0.018691589 0.0084401638 1.147046 AAUAUU,AGAAUU,GUAAUA,UAAUAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
HNRNPH2 9 9711 0.031152648 0.0140746688 1.146254 AAGGGA,AAGGUG,AGGGAA,AUCGGG,GGGAAU,GGGAGG,GGGGAA,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
RBM5 6 6879 0.021806854 0.0099705232 1.129041 AAGGAA,AAGGAG,AAGGUG,AGGGAA,CAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
ENOX1 2 3195 0.009345794 0.0046316558 1.012789 AAGACA,UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPH1 9 10717 0.031152648 0.0155325680 1.004058 AAGGGA,AAGGUG,AGGGAA,AUCGGG,GGGAAU,GGGAGG,GGGGAA,UGGGGU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZRANB2 4 45 0.22727273 0.003012837 6.237158 GGUAAA,GUAAAG,UAAAGG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
SRSF5 1 44 0.09090909 0.002947341 4.946939 UAAAGG AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
ZFP36 1 126 0.09090909 0.008318051 3.450107 GUAAAG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA1L2 3 188 0.009523810 0.0009522370 3.322146 AUAGGG,GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA AAUUUA,AGAUAU,AGUAGG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBMS3 5 562 0.014285714 0.0028365578 2.332360 CUAUAG,CUAUAU,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ZCRB1 6 666 0.016666667 0.0033605401 2.310201 AAUUAA,AUUUAA,GAUUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAG,AGAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 5 598 0.014285714 0.0030179363 2.242939 AGUAUA,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RBM3 4 541 0.011904762 0.0027307537 2.124168 AAUACU,AGACUA,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPAB 2 351 0.007142857 0.0017734784 2.009919 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SF1 10 1294 0.026190476 0.0065245869 2.005084 ACAGAC,AUACUA,AUUAAC,UAACAA,UACUAA,UACUGA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TRA2A 7 1133 0.019047619 0.0057134220 1.737184 AAAGAA,AAGAAA,AGAAAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUGAA,AUCAUU,AUGAAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ELAVL3 11 1928 0.028571429 0.0097188634 1.555714 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAGUG,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TIAL1 30 5597 0.073809524 0.0282043531 1.387889 AAAUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUG,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUGUU,AUUGUA,GUAAAU,UAAUGU,UGUAAA,UGUAAU,UUAAUG,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PPIE 49 9262 0.119047619 0.0466696896 1.350981 AAAAUA,AAAUUA,AAAUUU,AAUUAA,AAUUUA,AUAUUU,AUUAAU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUU,UAAUUA,UAAUUU,UAUAUU,UAUUAU,UAUUUU,UUAAAU,UUAAUA,UUAAUU,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL2 50 9826 0.121428571 0.0495112858 1.294279 AAUUUA,AAUUUG,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAU,AUUUUA,AUUUUC,AUUUUU,CUUUAA,GAUUUA,GAUUUU,UAAUUU,UAUACU,UAUAUU,UAUUAU,UAUUUU,UGAUUU,UUAAUU,UUAUUU,UUGAUU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS1 8 1945 0.021428571 0.0098045143 1.128018 AUUUAA,AUUUAC,CUAAAA,CUAAAU,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPA2B1 8 2033 0.021428571 0.0102478839 1.064210 AAUUUA,AGACUA,AUAGGG,AUUUAA,GACUAG,GUAGGG,UAGGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
QKI 3 904 0.009523810 0.0045596534 1.062615 AUUAAC,CACUAA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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