ENSG00000112699:-:6:1726415:1742586

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000112699:-:6:1726415:1742586 ENSG00000112699 ENST00000380805 - 6 1726416 1742586 216 GCUAUGUGGUUGAUGUUGCAGAAUGAUGAGCCGGAGGACUUCGUUAUAGCUACUGGGGAGGUCCAUAGUGUCCGGGAAUUUGUCGAGAAAUCAUUCUUGCACAUUGGAAAAACCAUUGUGUGGGAAGGAAAGAAUGAAAAUGAAGUGGGCAGAUGUAAAGAGACCGGCAAAGUUCACGUGACUGUGGAUCUCAAGUACUACCGGCCAACUGAAGUGGCUAUGUGGUUGAUGUUGCAGAAUGAUGAGCCGGAGGACUUCGUUAUAGC circ
ENSG00000112699:-:6:1726415:1742586 ENSG00000112699 ENST00000380805 - 6 1726416 1742586 22 CAACUGAAGUGGCUAUGUGGUU bsj
ENSG00000112699:-:6:1726415:1742586 ENSG00000112699 ENST00000380805 - 6 1742577 1742786 210 GGCAUCCACACCAAGAAGUUCCUCAUGUUAUUCGGAUACUCAGUAAAAGUUGGGAGCCAUUGCUGUUGUGCUUAGAAUAUGCUAUGAAAUUCAUGCUCAUGUUCCAGCUGUCGAUGUCCAUAUCUGAUUAUGUGCACUGGAAAACAAUGUGUGGCCACUGAGUGUGACUUCAAAGUGAACUUGCCUCUCUUUCCCUCUAGGCUAUGUGGU ie_up
ENSG00000112699:-:6:1726415:1742586 ENSG00000112699 ENST00000380805 - 6 1726216 1726425 210 AACUGAAGUGGUAAGGACUCUCUGGCCACCCAGUGCGUGGCCACAUUUGGCUGGCUGGCUGGGCAAAUGCGCUCAUGGAAUGCCUGGUGCCAGCCUUUGGAGCUGUCAGUUCAGCUCCCUGGCAUCCUUCAGCGUGCAUUUCCAAAAUCAGAACACAGUGAAUUCAAUUUGAGAUUAUCAUUCUUACCACAAACUUCAUUGCUCUAUAAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 1 452 0.009259259 0.0006564894 3.818053 UGACUG UGACUG,UGCAUG
HNRNPM 2 999 0.013888889 0.0014492040 3.260599 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
ESRP2 5 2150 0.027777778 0.0031172377 3.155591 GGGAAG,GGGAAU,GGGGAG,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC3 2 1234 0.013888889 0.0017897669 2.956088 AAAAAC,AAAACC AAAAAC,AAAACA,AAAACC,GAAAAC
CELF2 3 1886 0.018518519 0.0027346479 2.759542 UAUGUG,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 1415 0.013888889 0.0020520728 2.758777 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SNRPB2 1 991 0.009259259 0.0014376103 2.687224 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM46 8 4554 0.041666667 0.0066011240 2.658110 AAUCAU,AAUGAA,AAUGAU,AUCAUU,AUGAAA,AUGAAG,AUGAUG AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBFOX1 1 1077 0.009259259 0.0015622419 2.567279 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
EIF4B 1 1179 0.009259259 0.0017100607 2.436849 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF4 2 1782 0.013888889 0.0025839306 2.426292 GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF6 4 2997 0.023148148 0.0043447134 2.413564 GUGUGG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
RBMS3 1 1283 0.009259259 0.0018607779 2.314991 UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TARDBP 3 2654 0.018518519 0.0038476365 2.266924 GAAUGA,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPH3 9 7688 0.046296296 0.0111429292 2.054768 AUGUGG,GGAAGG,GGAGGA,GGGAAG,GGGAAU,GGGAGG,GGGGAG,GUCGAG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
RBM24 2 2357 0.013888889 0.0034172229 2.023035 GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF1 2 2391 0.013888889 0.0034664959 2.002381 UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PABPC5 2 2400 0.013888889 0.0034795387 1.996963 AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SART3 2 2634 0.013888889 0.0038186524 1.862796 AAAAAC,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPH2 10 9711 0.050925926 0.0140746688 1.855299 AUGUGG,CUGGGG,GGAAGG,GGAGGA,GGGAAG,GGGAAU,GGGAGG,GGGGAG,GUCGAG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
TRA2B 7 7329 0.037037037 0.0106226650 1.801823 AAAGAA,AAGAAU,AAGGAA,AGGAAA,GAAAGA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PUM2 1 1890 0.009259259 0.0027404447 1.756487 UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPF 10 10561 0.050925926 0.0153064921 1.734257 AUGUGG,CUGGGG,GGAAGG,GGAGGA,GGGAAG,GGGAAU,GGGAGG,GGGGAG,UGGGAA,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 10 10717 0.050925926 0.0155325680 1.713104 AUGUGG,CUGGGG,GGAAGG,GGAGGA,GGGAAG,GGGAAU,GGGAGG,GGGGAG,GUCGAG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
CSTF2 1 1967 0.009259259 0.0028520334 1.698906 UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBMX 3 4925 0.018518519 0.0071387787 1.375220 AAGGAA,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
QKI 1 2805 0.009259259 0.0040664663 1.187121 AAUCAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
LIN28A 2 4315 0.013888889 0.0062547643 1.150904 CGGAGG,GGAGGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
PABPC1 2 4443 0.013888889 0.0064402624 1.108740 AAAAAC,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
NELFE 1 3028 0.009259259 0.0043896388 1.076795 UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 1 3065 0.009259259 0.0044432593 1.059278 UUCUUG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
SRSF10 8 13860 0.041666667 0.0200874160 1.052602 AAAGAA,AAAGAG,AAGAGA,AAGGAA,AGAGAC,GAAAGA,GAGAAA,GAGACC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
ZRANB2 1 3173 0.009259259 0.0045997733 1.009334 GUAAAG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NELFE 1 8 0.09090909 0.0005894682 7.268867 UGGCUA CUCUGG,CUGGCU,CUGGUU,UCUGGC,UCUGGU
FMR1 3 117 0.18181818 0.0077285827 4.556149 AGUGGC,GGCUAU,GUGGCU AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 2 84 0.007142857 0.0004282547 4.059960 AUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PTBP2 2 146 0.007142857 0.0007406288 3.269679 CUCUCU CUCUCU
RBM6 1 191 0.004761905 0.0009673519 2.299426 CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGA,CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
TUT1 1 230 0.004761905 0.0011638452 2.032640 GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM24 6 888 0.016666667 0.0044790407 1.895704 AGUGUG,GAGUGU,GUGUGA,GUGUGG,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SAMD4A 5 790 0.014285714 0.0039852882 1.841817 CUGGAA,CUGGCA,CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
NELFE 7 1059 0.019047619 0.0053405885 1.834540 CUCUCU,CUCUGG,CUGGCU,UCUCUG,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,UAUGUG,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACAAAC,ACACCA,ACCACA,CACACC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
IGF2BP3 8 1348 0.021428571 0.0067966546 1.656639 AAAACA,AAAAUC,AAAUCA,AAAUUC,AACACA,AAUUCA,ACAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
IGF2BP2 12 2163 0.030952381 0.0109028617 1.505344 AAAACA,AAAAUC,AAAUCA,AAAUUC,AACACA,AAUUCA,ACAAAC,CCACAC,GAAAAC,GAACAC,GAAUUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SSB 2 505 0.007142857 0.0025493753 1.486358 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
YBX1 6 1321 0.016666667 0.0066606207 1.323237 ACACCA,ACCACA,CACACC,CCACAA,CCACAC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAACAA,AACACA,ACACCA,ACCACA,CACAAA,CACACC AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGAAU,GUUGUG,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
YTHDC1 5 1254 0.014285714 0.0063230552 1.175879 GAAUGC,GCGUGC,GGAUAC,UCAUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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