ENSG00000111358:+:12:123645454:123652735

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000111358:+:12:123645454:123652735 ENSG00000111358 MSTRG.8256.3 + 12 123645455 123652735 393 UUCACUUUAUCCAAAUGCAUAGAUGCCGUGAUGGUGCUGGGAAAUUCGCAUUUAUUCAUGAAUCGUUCCAACAAACUUGCUGUGAUAGCAAGUCACAUUCAAGAAAGCCGAUUCUUAUAUCCUGGAAAGAAUGGCAGACUUGGAGACUUCUUCGGAGACCCUGGCAACCCUCCUGAAUUUAAUCCCUCUGGGAGUAAAGAUGGAAAAUACGAACUUUUAACCUCAGCAAAUGAAGUUAUUGUUGAAGAGAUUAAAGAUCUAAUGACCAAAAGUGACAUAAAGGGUCAACAUACAGAAACUUUGCUGGCAGGAUCCCUGGCCAAAGCCCUUUGCUACAUUCAUAGAAUGAACAAGGAAGUUAAAGACAAUCAGGAAAUGAAAUCAAGGAUAUUGUUCACUUUAUCCAAAUGCAUAGAUGCCGUGAUGGUGCUGGGAAAUUCGCA circ
ENSG00000111358:+:12:123645454:123652735 ENSG00000111358 MSTRG.8256.3 + 12 123645455 123652735 22 CAAGGAUAUUGUUCACUUUAUC bsj
ENSG00000111358:+:12:123645454:123652735 ENSG00000111358 MSTRG.8256.3 + 12 123645255 123645464 210 AGCUAAGGUUUCAUUAUGUUGCCUAGGCUGGUCUCAAACUCCUGAACUCAAGCAGUCCUCCCACCUUGGCCUCUCAGGGUGCUGGGAUUACAGGCUUGAGCCACUGCACCCAGCCUAAACGACAUCUUAAUUAUGUCAAGACCUGACAUGGUUAUUUGGAUAGCUAAUUUGUUUUUCUAAUGUCUUUUUUUUUCCAACAGUUCACUUUAU ie_up
ENSG00000111358:+:12:123645454:123652735 ENSG00000111358 MSTRG.8256.3 + 12 123652726 123652935 210 AAGGAUAUUGGUAAGAUAAAAAAAUCAUUACUUUUUUAUAUGACAACUAUAAUUAGAAAACAUAACGGGAGACCAGGUGUGGUGGCUCACACCUGUUAUCCCAGCACUUUGGGAGGCCGAGGUGGGCAGAUCACUUGAGGUCAGGAGUUCGGGACCAGCCUGGCCAACAUGGUGAAACCCCGUCUCUACUCAAAAUACAAAAAUUAGCUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA0 1 453 0.005089059 0.0006579386 2.951374 AAUUUA AAUUUA,AGAUAU,AGUAGG
SNRNP70 4 1237 0.012722646 0.0017941145 2.826055 AAUCAA,AUCAAG,AUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
TUT1 1 678 0.005089059 0.0009840095 2.370655 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM6 2 1054 0.007633588 0.0015289102 2.319858 AUCCAA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPAB 4 1782 0.012722646 0.0025839306 2.299760 AAAGAC,AAGACA,AGACAA,AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
IGF2BP3 12 4815 0.033078880 0.0069793662 2.244742 AAAUAC,AAAUCA,AAAUUC,ACAAAC,ACAAUC,ACAUAC,ACAUUC,CAAUCA,CAUACA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
ZFP36L2 2 1277 0.007633588 0.0018520827 2.043213 AUUUAU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM3 4 2152 0.012722646 0.0031201361 2.027718 AAUACG,AUACGA,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPM 1 999 0.005089059 0.0014492040 1.812138 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM46 8 4554 0.022900763 0.0066011240 1.794612 AAUCAA,AAUGAA,AUCAAG,AUGAAA,AUGAAG,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 2 1605 0.007633588 0.0023274215 1.713629 AUUUAA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
EIF4B 1 1179 0.005089059 0.0017100607 1.573351 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPC5 3 2400 0.010178117 0.0034795387 1.548503 AGAAAG,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
IGF2BP2 13 8408 0.035623410 0.0121863560 1.547559 AAAUAC,AAAUCA,AAAUUC,ACAAAC,ACAAUC,ACAUAC,ACAUUC,CAAUCA,CAUACA,CAUUCA,GAAAUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
SSB 1 1260 0.005089059 0.0018274462 1.477570 UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS3 1 1283 0.005089059 0.0018607779 1.451493 UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
NOVA1 5 3872 0.015267176 0.0056127669 1.443649 AGUCAC,AUUCAU,CAUUCA AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RBM41 1 1318 0.005089059 0.0019115000 1.412694 UACAUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 3 2654 0.010178117 0.0038476365 1.403426 GAAUGA,GAAUGG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SAMD4A 5 3992 0.015267176 0.0057866714 1.399628 CUGGAA,CUGGCA,CUGGCC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
QKI 3 2805 0.010178117 0.0040664663 1.323623 AUCUAA,UAACCU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPD 3 2837 0.010178117 0.0041128408 1.307264 AAUUUA,AUUUAU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPA3 2 2140 0.007633588 0.0031027457 1.298816 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 2 2150 0.007633588 0.0031172377 1.292093 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
HNRNPL 6 5085 0.017811705 0.0073706513 1.272962 AAAUAC,AACAAA,ACAUAA,ACAUAC,CAUAAA,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
SRSF3 20 16536 0.053435115 0.0239654858 1.156830 AACUUU,ACAUUC,ACUUCU,ACUUUA,AGAGAU,AUCGUU,AUUCAU,CAUUCA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GUCAAC,UCGUUC,UCUUCG,UUCUUC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
ENOX1 3 3195 0.010178117 0.0046316558 1.135871 AAGACA,AUACAG,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
G3BP2 1 1644 0.005089059 0.0023839405 1.094051 AGGAUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
DAZAP1 6 5964 0.017811705 0.0086445016 1.042971 AAUUUA,AGGAAA,AGGAAG,AGGAUA,AGUAAA,AGUUAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TARDBP 1 10 0.09090909 0.0007204611 6.979360 UUGUUC GAAUGA,GAAUGU,GUUUUG,UGUGUG,UUGUGC,UUGUUC
ELAVL2 1 28 0.09090909 0.0018993974 5.580811 UAUUGU AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR1 2 69 0.007142857 0.0003526804 4.340068 ACGACA,AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
YBX2 2 263 0.007142857 0.0013301088 2.424957 ACAACU,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
CPEB4 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
U2AF2 8 1071 0.021428571 0.0054010480 1.988224 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AUAAUU,UAAUUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAG,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SYNCRIP 7 1041 0.019047619 0.0052498992 1.859249 AAAAAA,UUUUUU AAAAAA,UUUUUU
KHDRBS2 7 1051 0.019047619 0.0053002821 1.845470 AUAAAA,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
AGO1 1 283 0.004761905 0.0014308746 1.734641 UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPU 7 1136 0.019047619 0.0057285369 1.733372 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACGACA,ACUGCA,CACACC,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,CUACUC,UACUCA,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA AAAAAA,AAAAAG
SART3 4 777 0.011904762 0.0039197904 1.602690 AAAAAA,AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
FUS 10 1711 0.026190476 0.0086255542 1.602353 AAAAAA,GGGUGC,UGGUGA,UGGUGG,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SAMD4A 4 790 0.011904762 0.0039852882 1.578783 CGGGAC,CUGGCC,CUGGUC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPC 11 2006 0.028571429 0.0101118501 1.498526 CUUUUU,GGAUAU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
IGF2BP3 7 1348 0.019047619 0.0067966546 1.486714 AAAACA,AAAAUC,AAACUC,AAAUAC,AAAUCA,AACUCA,AAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AGAUCA,GAUCAC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
KHDRBS3 8 1646 0.021428571 0.0082980653 1.368689 AGAUAA,AUAAAA,GAUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUAAAA,CAAAAU,GAAAAC,UAAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
IGF2BP2 9 2163 0.023809524 0.0109028617 1.126832 AAAACA,AAAAUC,AAACUC,AAAUAC,AAAUCA,AACUCA,AAUACA,GAAAAC,GAACUC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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