ENSG00000103342:-:16:11875760:11898035

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000103342:-:16:11875760:11898035 ENSG00000103342 ENST00000434724 - 16 11875761 11898035 1509 CACCUGUGGAAUCCUCUCAAGAGGAACAGUCAUUGUGUGAAGGUUCAAAUUCAGCUGUUAGCAUGGAACUUUCAGAACCUAUUGUAGAAAAUGGAGAGACAGAAAUGUCUCCAGAAGAAUCAUGGGAGCACAAAGAAGAAAUAAGUGAAGCAGAGCCAGGGGGUGGUUCCUUGGGAGAUGGAAGGCCGCCAGAGGAAAGUGCCCAUGAAAUGAUGGAGGAGGAAGAGGAAAUCCCAAAACCUAAGUCUGUGGUUGCACCGCCAGGUGCUCCUAAGAAAGAGCAUGUAAAUGUAGUAUUCAUUGGGCACGUAGAUGCUGGCAAGUCAACCAUUGGAGGACAAAUAAUGUAUUUGACUGGAAUGGUUGACAAAAGGACGCUUGAAAAGUAUGAAAGAGAAGCUAAAGAGAAAAACAGAGAAACUUGGUACUUGUCUUGGGCCUUAGACACAAAUCAGGAAGAACGAGACAAGGGUAAAACAGUAGAAGUGGGUCGUGCCUAUUUUGAAACCGAAAAGAAGCAUUUCACAAUUCUAGAUGCCCCUGGCCACAAGAGUUUUGUCCCAAAUAUGAUUGGUGGUGCCUCUCAAGCUGAUUUGGCUGUGCUGGUAAUCUCAGCCAGGAAAGGAGAGUUUGAAACUGGAUUUGAAAAAGGAGGACAGACAAGAGAACAUGCAAUGUUGGCAAAGACAGCAGGUGUAAAACACCUAAUUGUGCUAAUUAAUAAGAUGGAUGAUCCAACAGUAAAUUGGAGCAAUGAGAGAUAUGAAGAAUGUAAGGAGAAACUAGUGCCAUUUUUGAAAAAAGUUGGCUUCAAUCCCAAAAAGGACAUUCACUUUAUGCCCUGCUCAGGACUUACUGGAGCAAAUCUCAAAGAGCAGUCGGAUUUCUGUCCUUGGUACAUUGGAUUACCGUUUAUUCCAUAUCUGGAUAAUUUGCCGAACUUCAAUAGAUCAGUUGAUGGACCAAUCAGGCUGCCAAUUGUGGAUAAGUACAAGGAUAUGGGCACUGUGGUCCUGGGAAAGCUGGAAUCAGGAUCUAUUUGUAAAGGCCAGCAGCUUGUGAUGAUGCCAAACAAGCACAACGUGGAAGUUCUUGGAAUACUUUCCGAUGAUGUAGAGACUGAUACCGUAGCCCCAGGUGAAAACCUCAAAAUCAGACUGAAAGGAAUUGAAGAAGAGGAGAUUCUUCCAGGGUUUAUACUUUGUGAUCCUAAUAAUCUUUGUCAUUCUGGACGCACAUUUGAUGCCCAGAUAGUGAUUAUAGAGCACAAAUCCAUCAUCUGCCCAGGCUAUAAUGCGGUGCUGCAUAUUCAUACCUGUAUUGAGGAGGUGGAAAUAACAGCCUUAAUCUGCUUGGUAGACAAAAAAUCAGGAGAAAAAAGUAAGACCCGACCCCGUUUUGUCAAACAAGAUCAAGUAUGCAUUGCUCGCUUAAGGACAGCAGGAACCAUCUGCCUUGAGACCUUUAAAGACUUCCCUCAGAUGGGUCGUUUCACCUUAAGAGAUGAGGCACCUGUGGAAUCCUCUCAAGAGGAACAGUCAUUGUGUGAAGGUUCAAAU circ
ENSG00000103342:-:16:11875760:11898035 ENSG00000103342 ENST00000434724 - 16 11875761 11898035 22 AAGAGAUGAGGCACCUGUGGAA bsj
ENSG00000103342:-:16:11875760:11898035 ENSG00000103342 ENST00000434724 - 16 11898026 11898235 210 GGCUGUAAUUAGUAGAAUUUUGAAAAGUAGGUUAAGCAGAGACUUCUAACUUGAAGGCCUGAGUUAGCUGCCAUUGAUCUGGGGUUAUUGAUUGAGGCUUGUGUCGUGUUAUUGAACUUCUGUUUUUACUGCAUAUUAAAAGAUAAGUGAAAUGGAUGGAUAAGUAUCAAUUUUUAAUAGAACUUCUUUCUGUUAAACAGCACCUGUGGA ie_up
ENSG00000103342:-:16:11875760:11898035 ENSG00000103342 ENST00000434724 - 16 11875561 11875770 210 AGAGAUGAGGGUAAGAGCUUUUAAACUGACGUCUAGUAGUAUAUCCAGGAUACCUAGCUUUGGUCAUCUUCAUCAUCUCAGUACAGUACACAUUGCAACAGGUUCACAGAAAACUUCGAUUCACAUUCUUAUUCGUAUGAGUGUUUUAUGAGUUGAAUGUAUUGAACAGAAUUGACCACGUGCUUUAGUAGUAAUGCCAAAUCUAGUAAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 2 314 0.001988072 0.0004564992 2.122685 GACAGA GACAGA
RBMY1A1 3 489 0.002650762 0.0007101099 1.900293 ACAAGA ACAAGA,CAAGAC
HNRNPAB 13 1782 0.009277667 0.0025839306 1.844195 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
NONO 10 1498 0.007289596 0.0021723567 1.746578 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC3 7 1234 0.005301524 0.0017897669 1.566636 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 7 1251 0.005301524 0.0018144033 1.546912 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM28 4 822 0.003313453 0.0011926949 1.474110 AGUAGA,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRSF11 3 688 0.002650762 0.0009985015 1.408571 AAGAAG AAGAAG
PABPC1 23 4443 0.015904573 0.0064402624 1.304250 AAAAAA,AAAAAC,ACAAAU,AGAAAA,CAAACA,CAAAUA,CAAAUC,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
SRSF4 19 3740 0.013253810 0.0054214720 1.289651 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM41 6 1318 0.004638834 0.0019115000 1.279057 AUACUU,UACAUU,UACUUG,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
PUM2 9 1890 0.006626905 0.0027404447 1.273925 GUAAAU,GUACAU,GUAGAU,UGUAAA,UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRSF10 71 13860 0.047713718 0.0200874160 1.248112 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGGA,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGAGA,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
FXR2 16 3434 0.011265739 0.0049780156 1.178299 AGACAA,AGACAG,GACAAA,GACAAG,GACAGA,GGACAA,GGACAG,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
TRA2A 33 6871 0.022531478 0.0099589296 1.177879 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SART3 12 2634 0.008614977 0.0038186524 1.173783 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
IGHMBP2 3 813 0.002650762 0.0011796520 1.168046 AAAAAA AAAAAA
ERI1 2 632 0.001988072 0.0009173461 1.115832 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBFOX1 4 1077 0.003313453 0.0015622419 1.084717 AGCAUG,GCAUGU,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBFOX2 1 452 0.001325381 0.0006564894 1.013564 UGACUG UGACUG,UGCAUG
HNRNPA0 1 453 0.001325381 0.0006579386 1.010382 AGAUAU AAUUUA,AGAUAU,AGUAGG
ENOX1 13 3195 0.009277667 0.0046316558 1.002234 AAGACA,AGACAG,AGGACA,AGUACA,CAGACA,GGACAG,UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NOVA2 1 15 0.09090909 0.001047943 6.438792 GAGGCA ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
SRSF6 1 68 0.09090909 0.004519256 4.330267 GCACCU AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
G3BP1 1 69 0.09090909 0.004584752 4.309509 AGGCAC ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 1 117 0.09090909 0.007728583 3.556149 AGGCAC AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 GAGGCA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM6 2 191 0.007142857 0.0009673519 2.884389 AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM28 4 340 0.011904762 0.0017180572 2.792689 AGUAGA,AGUAGG,AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
AGO1 2 283 0.007142857 0.0014308746 2.319604 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
MSI1 7 961 0.019047619 0.0048468360 1.974496 AGUAGG,AGUUAG,UAGUAA,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAA,GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AGUAUA,UAAUUA,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RC3H1 3 631 0.009523810 0.0031841999 1.580608 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SRSF3 22 3825 0.054761905 0.0192765014 1.506329 ACAUUC,ACUUCG,ACUUCU,AGAGAU,AUCAUC,AUCUUC,CAGAGA,CAUCAU,CUUCAU,CUUCGA,CUUCUU,GACUUC,UAUCAA,UCAUCA,UCAUCU,UCGAUU,UCUUCA,UUCAUC,UUCGAU AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGUACA,GUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUGAC,CACAGA,GCUGCC,UAGUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SRSF7 12 2893 0.030952381 0.0145808142 1.085979 AGAGAC,AGAGAU,AUAGAA,AUUGAC,AUUGAU,CAGAGA,GAAGGC,GAGACU,GAUUGA,UCGAUU,UCUUCA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AACAGC,ACAGCA,ACCACG,ACUGCA,AGUAGG,CUAACU,CUAGCU,CUAGUA,CUUUAG,UAAGUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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