ENSG00000165671:+:5:177209635:177239865

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000165671:+:5:177209635:177239865 ENSG00000165671 ENST00000439151 + 5 177209636 177239865 3066 GUUCCUCAGAAAAUUUUGAGUAAAUGGGAAGCCAGUGUUGGACUUGCAGAACAGUAUGAUGUUCCCAAGGGGUCAAAGAACCGAAAAUGUAUUCCUGGUUCAAUCAAGUUGGACAGUGAAGAAGAUAUGCCAUUUGAAGACUGCACAAAUGAUCCUGAGUCAGAACAUGACCUGUUGCUUAAUGGCUGUUUGAAAUCACUGGCUUUUGAUUCUGAACAUUCUGCAGAUGAGAAGGAAAAGCCUUGCGCUAAAUCUCGAGCCAGAAAGAGCUCUGAUAAUCCAAAAAGGACUAGUGUGAAAAAGGGCCACAUACAAUUUGAAGCACAUAAAGAUGAACGGAGGGGAAAGAUUCCAGAGAACCUUGGCCUAAACUUUAUCUCUGGGGAUAUAUCUGAUACGCAGGCCUCUAAUGAACUUUCCAGGAUAGCAAAUAGCCUCACAGGGUCCAACACUGCCCCAGGAAGUUUUCUGUUUUCUUCCUGUGGAAAAAACACUGCAAAGAAAGAAUUUGAGACUUCAAAUGGUGACUCUUUAUUGGGCUUGCCUGAGGGUGCUUUGAUCUCAAAGUGUUCUCGAGAGAAGAAUAAACCCCAACGAAGCCUGGUGUGUGGUUCAAAAGUGAAGCUCUGCUAUAUUGGAGCAGGUGAUGAGGAAAAGCGAAGUGAUUCCAUUAGUAUCUGUACCACUUCUGAUGAUGGAAGCAGUGACCUGGAUCCCAUAGAACACAGCUCAGAGUCUGAUAACAGUGUCCUUGAAAUUCCAGAUGCUUUCGAUAGAACAGAGAACAUGUUAUCUAUGCAGAAAAAUGAAAAGAUAAAGUAUUCUAGGUUUGCUGCCACAAACACUAGGGUAAAAGCAAAACAGAAGCCUCUCAUUAGUAACUCACAUACAGACCACUUAAUGGGUUGUACUAAGAGUGCAGAGCCUGGAACCGAGACGUCUCAGGUUAAUCUCUCUGAUCUGAAGGCAUCUACUCUUGUUCACAAACCCCAGUCAGAUUUUACAAAUGAUGCUCUCUCUCCAAAAUUCAACCUGUCAUCAAGCAUAUCCAGUGAGAACUCGUUAAUAAAGGGUGGGGCAGCAAAUCAAGCUCUAUUACAUUCGAAAAGCAAACAGCCCAAGUUCCGAAGUAUAAAGUGCAAACACAAAGAAAAUCCAGUUAUGGCAGAACCCCCAGUUAUAAAUGAGGAGUGCAGUUUGAAAUGCUGCUCUUCUGAUACCAAAGGCUCUCCUUUGGCCAGCAUUUCUAAAAGUGGGAAAGUGGAUGGUCUAAAACUACUGAACAAUAUGCAUGAGAAAACCAGGGAUUCAAGUGACAUAGAAACAGCAGUGGUGAAACAUGUUUUAUCCGAGUUGAAGGAACUCUCUUACAGAUCCUUAGGUGAGGAUGUCAGUGACUCUGGAACAUCAAAGCCAUCAAAACCAUUACUUUUCUCUUCUGCUUCUAGUCAGAAUCACAUACCUAUUGAACCAGACUACAAAUUCAGUACAUUGCUAAUGAUGUUGAAAGAUAUGCAUGAUAGUAAGACGAAGGAGCAGCGGUUGAUGACUGCUCAAAACCUGGUCUCUUACCGGAGUCCUGGUCGUGGGGACUGUUCUACUAAUAGUCCUGUAGGAGUCUCUAAGGUUUUGGUUUCAGGAGGCUCCACACACAAUUCAGAGAAAAAGGGAGAUGGCACUCAGAACUCCGCCAAUCCUAGCCCUAGUGGGGGUGACUCUGCAUUAUCUGGCGAGUUGUCUGCUUCCCUACCUGGCUUACUGUCCGACAAGAGAGACCUCCCUGCUUCUGGUAAAAGUCGUUCAGACUGUGUUACUAGGCGCAACUGUGGACGAUCAAAGCCUUCAUCCAAAUUGCGAGAUGCUUUUUCAGCCCAAAUGGUAAAGAACACAGUGAACCGUAAAGCCUUAAAGACCGAGCGCAAAAGAAAACUGAAUCAGCUUCCAAGUGUGACUCUUGAUGCUGUACUGCAGGGAGACCGAGAACGUGGAGGUUCAUUGAGAGGUGGGGCAGAAGAUCCUAGUAAAGAGGAUCCCCUUCAGAUAAUGGGCCACUUAACAAGUGAAGAUGGUGACCAUUUUUCUGAUGUGCAUUUCGAUAGCAAGGUUAAGCAAUCUGAUCCUGGUAAAAUUUCUGAAAAAGGACUCUCUUUUGAAAACGGAAAAGGCCCAGAGCUGGACUCUGUAAUGAACAGUGAGAAUGAUGAACUCAAUGGUGUAAAUCAAGUGGUGCCUAAAAAGCGGUGGCAGCGUUUAAACCAAAGGCGCACUAAACCUCGUAAGCGCAUGAACAGAUUUAAAGAGAAAGAAAACUCUGAGUGUGCCUUUAGGGUCUUACUUCCUAGUGACCCUGUGCAGGAGGGGCGGGAUGAGUUUCCAGAGCAUAGAACUCCUUCAGCAAGCAUACUUGAGGAACCACUGACAGAGCAAAAUCAUGCUGACUGCUUAGAUUCAGCUGGGCCACGGUUAAAUGUUUGUGAUAAAUCCAGUGCCAGCAUUGGUGACAUGGAAAAGGAGCCAGGAAUUCCCAGUUUGACACCACAGGCUGAGCUCCCUGAACCAGCUGUGCGGUCAGAGAAGAAACGCCUUAGGAAGCCAAGCAAGUGGCUUUUGGAAUAUACAGAAGAAUAUGAUCAGAUAUUUGCUCCUAAGAAAAAACAAAAGAAGGUACAGGAGCAGGUGCACAAGGUAAGUUCCCGCUGUGAAGAGGAAAGCCUUCUAGCCCGAGGUCGAUCUAGUGCUCAGAACAAGCAGGUGGACGAGAAUUCUUUGAUUUCAACCAAAGAAGAGCCUCCAGUUCUUGAAAGGGAGGCUCCGUUUUUGGAGGGCCCCUUGGCUCAGUCAGAACUUGGAGGUGGACAUGCUGAGUUGCCGCAGCUGACCUUGUCUGUGCCUGUGGCUCCGGAAGUCUCUCCACGGCCUGCCCUUGAGUCUGAGGAAUUGCUAGUUAAAACGCCAGGAAAUUAUGAAAGUAAACGUCAAAGAAAACCAACUAAGAAACUUCUUGAAUCCAAUGAUUUAGACCCUGGAUUUAUGCCCAAGAAGGGGGACCUUGGCCUUUCUAAAAAGGUUCCUCAGAAAAUUUUGAGUAAAUGGGAAGCCAGUGUUGGACUUGCAGA circ
ENSG00000165671:+:5:177209635:177239865 ENSG00000165671 ENST00000439151 + 5 177209636 177239865 22 UUUCUAAAAAGGUUCCUCAGAA bsj
ENSG00000165671:+:5:177209635:177239865 ENSG00000165671 ENST00000439151 + 5 177209436 177209645 210 GGAGAAUCACUUGAACCCGGGAGGCAGAGGUUGUGGUGAGCGAAGAUUGUGCCACUGCACUCCAGCCUGGGCGACAGAGCAAGACUCUGUCUCAAAAAAAAAAAAAAAAGGAAUAAAAAAAAAAGCUUCUGAUUUCAUCUCCCUUUUCCCCCACCCAUUUCUUUGAUAAGUGAUAAUUCUUUUUCUCCUUUAAAUUUAAGGUUCCUCAGA ie_up
ENSG00000165671:+:5:177209635:177239865 ENSG00000165671 ENST00000439151 + 5 177239856 177240065 210 UUCUAAAAAGGUAUGUUAUUUUUGUAAGUUCUAAAAGAAAUAAACUCAGGAAAUGAGAAAUUUUAAAAAUGACAUUUUGAGUAGCAGUUAUAACAUUGAUGUACAUACAUAUAGAAAUUAGUGUGUGUGUCAGCAGUCAUACAUGAUCUGAGAUUUCCUACAUGAAAGGCUGUUUUGCAGUUGUGUGACCAUGUAUGUGUAUAAACUGGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 5 267 0.0019569472 0.0003883867 2.333039 CUCUCU CUCUCU
ANKHD1 4 339 0.0016307893 0.0004927293 1.726703 AGACGA,AGACGU,GACGAA,GACGAU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ESRP1 1 156 0.0006523157 0.0002275250 1.519545 AGGGAU AGGGAU
HNRNPA1L2 3 314 0.0013046314 0.0004564992 1.514958 UAGGGU,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM6 12 1054 0.0042400522 0.0015289102 1.471578 AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM42 4 407 0.0016307893 0.0005912752 1.463669 AACUAA,AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
PABPC3 14 1234 0.0048923679 0.0017897669 1.450761 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRNP70 13 1237 0.0045662100 0.0017941145 1.347725 AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBFOX2 4 452 0.0016307893 0.0006564894 1.312727 UGACUG,UGCAUG UGACUG,UGCAUG
NXF1 2 286 0.0009784736 0.0004159215 1.234222 AACCUG AACCUG
SART3 24 2634 0.0081539465 0.0038186524 1.094435 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ERI1 5 632 0.0019569472 0.0009173461 1.093067 UUCAGA,UUUCAG UUCAGA,UUUCAG
IGF2BP3 43 4815 0.0143509459 0.0069793662 1.039978 AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUUCA,ACAAAC,ACACAC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZRANB2 1 45 0.09090909 0.003012837 4.915230 AAAGGU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AAAAGG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF2 1 479 0.09090909 0.031438302 1.531901 GGUUCC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 16 350 0.040476190 0.0017684401 4.516524 AAAAAA AAAAAA
PABPC4 19 462 0.047619048 0.0023327287 4.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
AGO2 16 677 0.040476190 0.0034159613 3.566710 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SART3 16 777 0.040476190 0.0039197904 3.368225 AAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
SYNCRIP 16 1041 0.040476190 0.0052498992 2.946712 AAAAAA AAAAAA,UUUUUU
HNRNPU 16 1136 0.040476190 0.0057285369 2.820835 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
CELF2 12 881 0.030952381 0.0044437727 2.800193 AUGUGU,GUAUGU,GUGUGU,UAUGUG,UAUGUU,UGUGUG,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZC3H10 1 140 0.004761905 0.0007103990 2.744837 GAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
PABPC1 16 1321 0.040476190 0.0066606207 2.603345 AAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPD 18 1488 0.045238095 0.0075020153 2.592188 AAAAAA,AAUUUA,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
TARDBP 11 1034 0.028571429 0.0052146312 2.453936 GUGUGU,GUUGUG,GUUUUG,UGUGUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
FUS 17 1711 0.042857143 0.0086255542 2.312847 AAAAAA,UGGUGA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
CELF5 6 669 0.016666667 0.0033756550 2.303726 GUGUGU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM24 8 888 0.021428571 0.0044790407 2.258274 AGUGUG,GUGUGA,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PABPC5 5 596 0.014285714 0.0030078597 2.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
CELF1 10 1097 0.026190476 0.0055320435 2.243158 CUGUCU,GUGUGU,GUUGUG,UGUGUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF4 6 776 0.016666667 0.0039147521 2.089973 GUGUGU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
CSTF2 8 1022 0.021428571 0.0051541717 2.055723 GUGUGU,GUUUUG,UGUGUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM5 18 2359 0.045238095 0.0118903668 1.927745 AAAAAA,AAGGAA,AAGGUA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPLL 5 748 0.014285714 0.0037736800 1.920529 ACAUAC,ACUGCA,CACUGC,CAUACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
PUM2 5 764 0.014285714 0.0038542926 1.890035 GUACAU,UACAUA,UGUACA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAG,CAUAUA,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
DAZAP1 19 2878 0.047619048 0.0145052398 1.714965 AAAAAA,AAUUUA,AGGAAA,AGGUUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 19 2916 0.047619048 0.0146966949 1.696047 AAAAAA,UAUUUU,UUAUUU,UUUGUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPK 21 3244 0.052380952 0.0163492543 1.679817 AAAAAA,ACCCAU,CCCCAC,CCCCCA,UCCCCC,UCCCUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 AAUAAA,AUAAAA,AUAAAC AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
KHDRBS1 10 1945 0.026190476 0.0098045143 1.417524 AUAAAA,AUUUAA,CUAAAA,UAAAAA,UAAAAG,UUAAAA,UUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 CAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
CELF6 5 1196 0.014285714 0.0060308343 1.244144 GUGGUG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,AAUAAA,ACAUAC,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
ZFP36 45 9408 0.109523810 0.0474052801 1.208125 AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAGAA,AAAGGA,AAAUAA,AAGAAA,AAGGAA,AAUAAA,AGGAAA,AUAAAC,AUAAGU,AUUUAA,CCCUUU,CCUUUU,UCCUUU,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
FMR1 25 5430 0.061904762 0.0273629585 1.177826 AAAAAA,AAGGAA,ACUGGU,AGCGAA,AGGAAU,CUGGGC,GAGCGA,GCGAAG,GGGCGA,UAGCAG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
PPIE 43 9262 0.104761905 0.0466696896 1.166556 AAAAAA,AAAAAU,AAAUAA,AAAUUA,AAAUUU,AAUAAA,AAUUUA,AAUUUU,AUAAAA,AUAAUU,AUUUAA,AUUUUA,AUUUUU,UAAAAA,UAAAUU,UAUAAA,UAUUUU,UUAAAA,UUAAAU,UUAUAA,UUAUUU,UUUAAA,UUUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAACUC,AACUCA,ACAUAC,CAUACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
PCBP1 20 4891 0.050000000 0.0246473196 1.020497 AAAAAA,AAAUUA,CCACCC,CCCACC,CCCCAC AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
KHDRBS3 6 1646 0.016666667 0.0082980653 1.006119 AAAUAA,AAUAAA,AUAAAA,AUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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