ENSG00000181090_ENSG00000197070:+:9:137612895:137619049

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000181090_ENSG00000197070:+:9:137612895:137619049 ENSG00000181090_ENSG00000197070 MSTRG.33733.4 + 9 137612896 137619049 5548 CCAUCCGGGUGACCUGCAUAGGUUCCUGCGGGGUCUCCAACAAGGCUAAUGACACAGCGUGGGUAGUGGAGGAGGGUUACUUCAACAGUUCCCUGUCGCUGGCAGACAAGGGUAAGUUUGGGAGCCAGUUCCCGAGUGGUGACCCCUGGGGGCAGCCCUUGGAGUGGGGCCUGUCUGUCCUGUCCUCCCCCUUUCCUAGAUCUGCCUCUUGGAUCUGGCACUGGCCCAUCUUGUCCCAGGGUUGUGGGCCCUGAUGGCUUUCUCAUAGGCGCUGGGUGGCUGAAGGGGCCACCUCCCCCUUGUGCUGGAUUUGGGUGGGCUCUGACCCCUGGCACAGCUGUUUCACCCUUGCCCCAUUCCCAAACCACUCUCCUGUUCAAGCCAAGCUCUUAUCCUCAGUCCUUCACCCAAGCCACAGCCCUGUGCUGCUGUGGCGCUGGUGACUGAGACAGGGAGACCCAGUGUGAGCUGGUCAGCUGCAGUGCCCACUCUUAUCCUGGCCCUGUGGCCACCUCAGGCCACCUCAGGGGGGGACUGCCCCCCACCUCCCUCCUGUCUCUGCAGGGAGCCUGCCCGCUGGAGAGCACAGCUUCCCCUUCCAGUUCCUGCUUCCUGCCACUGCACCCACGUCCUUUGAGGGUCCUUUCGGGAAGAUCGUGCACCAGGUGAGGGCCGCCAUCCACACGCCACGGUUUUCCAAGGAUCACAAGUGCAGCCUCGUGUUCUAUAUCUUGAGCCCCUUGAACCUGAACAGCAUCCCAGACAUUGAGCAACCCAACGUGGCCUCUGCCACCAAGAAGUUCUCCUACAAGCUGGUGAAGACGGGCAGCGUGGUCCUCACAGCCAGCACUGAUCUCCGCGGCUAUGUGGUGGGGCAGGCACUGCAGCUGCAUGCCGACGUUGAGAACCAGUCAGGCAAGGACACCAGCCCUGUGGUGGCCAGUCUGCUGCAGAAAGUGUCCUAUAAGGCCAAGCGCUGGAUCCACGACGUACGGACCAUUGCGGAGGUGGAGGGUGCGGGCGUCAAGGCCUGGCGGCGGGCGCAGUGGCACGAGCAGAUCCUGGUGCCUGCCUUGCCCCAGUCGGCCCUGCCGGGCUGCAGCCUCAUCCACAUCGACUACUACUUACAGGUCUCUCUGAAGGCGCCGGAAGCUACUGUGACCCUCCCGGUCUUCAUUGGCAAUAUUGCUGUGAACCAUGCCCCAGUGAGCCCCCGGCCAGGCCUGGGGCUGCCUCCUGGGGCCCCACCCCUGGUGGUGCCUUCCGCACCACCCCAGGAGGAGGCUGAGGCUGAGGCUGCGGCUGGCGGCCCCCACUUCUUGGACCCCGUCUUCCUCUCCACCAAGAGCCAUUCGCAGCGGCAGCCCCUGCUGGCCACCUUGAGUUCUGUGCCUGGUGCGCCGGAGCCCUGCCCUCAGGAUGGCAGCCCUGCCUCACACCCGCUGCACCCUCCCUUGUGCAUUUCAACAGGUGCCACUGUCCCCUACUUUGCAGAGGGCUCCGGGGGGCCAGUGCCCACUACCAGCACCUUGAUUCUUCCUCCAGAGUACAGUUCUUGGGGCUACCCCUAUGAGGCCCCACCGUCUUAUGAGCAGAGCUGCGGCGGCGUGGAACCCAGCCUGACCCCUGAGAGCUGACCCCGUGCUGCCUUCUCCAGGCAGGCCUGGCCUCUGCCCUGGGACUGGGGCGCCCAGGGCCUCGUGCCUUCUCUCUUGGCCUAGCCUGGCCCACUCAGGACCUGCCCAGCCUCUGCCAGCUCCUCUGGCAUCCGCCCUCUUCUCCCUGGGGCUGGGGUGGGGGUGGCAGGGAGCUGGGACCUGGAGAGACAACUCCUGUAAAUAAAACACUUUAUUUGUAGAGCUGGGCCUCACCGGCCUCGCCUUGGGCACCCUCCAGCCUCUGGCAGGGCCUGACCCUGACCCCAUCCUGGGCUCUGCUCAUGCCAGGGCAGACCCUGCUCCUCAGGUGCCCCCUACUACCCUGGGGGCGCGCUCAGGCUACCAUGCCUGGGCGGAGCCGCGGGGCUGGCUCCCUUUAACAGAGGACGGGGGCUGGCGCUGGGCCUUCCAGAGCCGCCUAAGGACACGUCCUUGGAGCCCGGCUCAUGAAAUGGGGCCUCACGCAACCUUGGUGUUUGGUUAAAUUUGUGCCUUGGCUCCUGUUGCGUUUAGGCACCCAGGUUCCCAAGCGGUGUGGUGUGGACCUCCCCUGCUGAGAAACCCGCUGGCGCGUGGAGGGGCUUGCCCAGGUCCCUCCGACAGGAGACCCUGCUCCCUGGGCCUUGGCCCCUGCUAGCACCACUGCCAGGCCUGGCUCUGAGGGACGCUGCUUCUCCCCUGCCCACGUCUCCAAGGCCUGAAAGGCAGGGUUCUGUGGAACAGCAUUUCUCAAAGGGGCAUCCUGCAGACGUUCCAGCCCCAGGGGAGGCCCCGUGAUGCUGGCUGGCCUGCCUGGAGGGUGCUUCCAGAAACAACGGAGAUGGUGGUGAAGAAGGCUCUGGGUUCAAAUUCCAGUUCUCCUUUAGGGCGAAGGGGUGACUGUGGCUAGGUUUGUCAGUUACCUUAUCUAUAAAAUGCACAGGACCAGGCCGGGCACGGUGGCUCCCUCCUGUAAUCCCAGUACUUUGGGAGGCUGAGGCAGGUGGAUUGCUUGAGGUCAGGAGUUCCAGAUCAGCCUGGGCAACAUAGUGAAACUCCAUCUGUACAAAAAAAAAAAAAAAAAAAAAAUAGCUGGGCAUCAUGGCACAUGCUUGUAAUCCCAAUUACUCAGGAGGCUGAGGCAGGAGAAUCGCUUGAACCCAGGUGGCAGAGGUUACAGUGAUCUGAGAUUGUGCCACUGUACUCCGGCCUGGGUGACAGAGCAAGACUGCCUCAAAAAAUAAAAAAACAAAACCCCACAAAAAACUCGUGGGACUGUAGGGUACAGCCCCCCACCCUCAUAGCAUGACAGUUUAUUUCUUGAACAGUCCAGAGGGGGCAGAUCCUGGCCUUGUGGCAGAGUUGUCAUUCCUACAUAGUGGUUCCCAUCCCUGGCUCCCAGAUGGCUGUUGACAGCUUUCACCACUGCCCAGCCUAAUGGUGGGACUUUUGAGGGACAGACUGGGAAAUGGAUUGUCACUUUUUGUCUCUGACCUGUCCCCUUCCUGUUGGAAAUGUGGUCUUUAGCCAGGCAGUCCUGUACUUGGCUAAAAUUUUACUAAUUGUGGGACAGGCAGCAUGAAUAUUGGAGAACAGCAGAAAGUGUACCACAGGUGGGGUCAUCUGUGAAGCGCCUCCUGGAAGCAGUGCAGUAUAUGGUUGAAAGGAAGGCCUCCUGGGCUGAAUCCCAUCACUGCCUCUCACCACUCCCUUGCUUCAGUUCAGUCACUUAUAAAAUGUGGGUAAGAACAGUGCCUGCCUCUCAGGACUGACCUGAAGUCUGCAGUGUUAGCAUGUCACGUGCUGAGAGCAGCAUCUUGACAUAAGUGCUGAGGGGCACACAAGGGUAGCAGCUGAUGGAAAAAUGGAGUGAAAAAGCUGCCUGCAGCUGCUUCCCACACCUUCACUUAGGGUGGAUGUUUGCUUGGUGAAGGAUUUUUCUUCACAUUCUAACUCCCUUUAUUCAGUCAACAAUUUUUUUGUUGUUGUUGUUGAGACAGAGUCUUGCUCUGUUGCCCAGGCUGGAGUGCAGUGGCACAAUCUCAGCUCAUUGCAAGCUCUGCCUCCCGGGUUCAUGCCAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGACUACAGGCGCCCAGCACCACUCCCGGCUAUUUUUUGUAUUUUUAGUAGAGAUGGGGUUUCACCAUGUUAGCCAGGCUGGUCUCCAUCUCCUGACCUCAUGAUCUGCCCACCUCGGCCUCCCAAAGUGCUGGGAUUACAGGCGUGAGCCACCGCACCCGGCCCAGUCAACAAAUAUUUUGUCUCCUGUACACCAGGUAUUGUUCUAGGCACCAUGGACUUACAUUCUAGUAGGGAGACAAUAUUCCAAAUCAGGAUGUGGGAGAGUCACAUGACACACACUGUGAUGGAGCCAAGUAAGUCAACGAAGACAGGUAUGGGGGGGCAGUAUCAUUUUAACUAGGGAGGAGAGGGAAGGCUUCCCUUAAGAGGUGAUAUUUCAACUCAAGGAUGGUAAAGAGGGAAGCCACAAAGACACUCGAAAUAAAGGUUUCAGGGAAGGGACAGACAGCAGGGGUGGCGGAGAGGUGGGUGCGGGGCAGGAGGGCCAUGAAGGCGCUCGUGUCUCCUGCGAGGGCUCAGGGUGCUCGGCCUGUCAUAAAUGGACUUAGGCUUUGACAGAGCAGUUUAGCUGCCCUAAAGAAACCUGGGAAGGUUCCCUUGGCACUUGGGAUUGUCCGUUUCCUUUUCUGUCUAUGUGCGCUGUCUAUGCUGGACUUGAGAUAAUUCUCCGGAGUCCGACUCACCAGGAGACUCGGGUGUCACCCAGAUUGACCUUCAAGGCUCAUUUCUUGUCAGUCCAGUACCCGUCCCCUCGGUUCACACGACCAUCCAGAAACCUCAAAUUCAGUCCAUGCUUCUUGUUUUGGGUCUCGGGGCUGGGAUAAGGCGGGCUGACCACCGCGGGGCAUGUAGGUAGUUUCCGUGGUGCUGGGGGCGCUCUCCAGGGAAGGCUACUUGGUCUGCAGAAAAGGCCUUGACUUGUGCAUACCUGGGCAGCGGGCCUAUGAGUGGCAGCGAGAGCGGGGUAACCAGAGAGGGCACACCCCCCAACCGGAGCGCCCCCCAGGUUGGCAUCUCCACAACUGUAGAACCUCCCCCAUCAGGGCAACCCUCCCGAUUGGGACACCGCCCCCAGCCAGACACAUCCUCCUAGCAGAACACCCAUGCUUAGCCGGAGCCGCUCCCCCGCCAGACACCUCCCCACCGGGAAACCCUCCCCAGUGGGACACCCCAGCCAGUCCAGGUAUUCCCGCCGUUAGGGACACCCCCUCCAGCCGGAGCAUACCCUCGGCAGGGGCAUUCCUCCCAACCGAGGGAACCCCGCCGCAACGGGAACCUGCCUGAACCAGAGCACCCUCCCGCGCCGGGGACACCCCACAGGCGGCUCCCGCGCCAGGCCGCGGCCCAGGGAGUCAGCCUUCCGCGCAAGCCGGCGAAAUCAAAGUGCGUCCGGGGUUAGAGGUCAGAGGUCGGAGCCGCGGGUCUUUCUCCUUCUUCGGCCAGCCCACCAAAACGUCAAUUUAGAAUGAGACAUGUGUUGAAAAUGGGACGGCUACUCCCCAUCCACUACUACGACUCUGGCGGGCGGGUUCUCCAGCUCCAGGUCUCCUACCCCGCGGGCGCGCGUUCCGGUUCCGGCCGCCGCAGGCCCGGCGCCUGGGGCGCCGCACGCCUGGUUCCAGUGCGCAGGCGCCGCACCGGUCGAGCUCCAACGCGCAGGCGCGGGCGCAGGCGCAGGCGCAGACGUAGGCGAUCGGCCCCGCCCCGACUCUGGGCCGCGAGGCGCGGGCGGGGCGAUGGCGCGCGGGAGGGGCGGGGCCACGCUGCGGGCCCGGGCCAUGGCCGCCGCCGAUGCCGAGCCAUCCGGGUGACCUGCAUAGGUUCCUGCGGGGUCUCCAACAAGGCUAAU circ
ENSG00000181090_ENSG00000197070:+:9:137612895:137619049 ENSG00000181090_ENSG00000197070 MSTRG.33733.4 + 9 137612896 137619049 22 CCGAUGCCGAGCCAUCCGGGUG bsj
ENSG00000181090_ENSG00000197070:+:9:137612895:137619049 ENSG00000181090_ENSG00000197070 MSTRG.33733.4 + 9 137612696 137612905 210 CCUGCCUGAUUCCCUUGGAGCCCCCCAAGACAGGAGAUGGGCAGAUGUCCUCUGAAGUGGCAUGGGCUGCUUGCUCACUGGCCUUCCCAGGACCCUGCCCAGGUGGUGCUGCUUGGCCCCAGGUCGAAUUCCUGUGCUGGCAGCAAGCAGGGGCCUGGGCCGUCGGCUGGCUGGGGCUCAUGCAGCCAUCCCCUUUGCAGCCAUCCGGGU ie_up
ENSG00000181090_ENSG00000197070:+:9:137612895:137619049 ENSG00000181090_ENSG00000197070 MSTRG.33733.4 + 9 137619040 137619249 210 CGAUGCCGAGGUGAGCAGCGGGGCCGGCGGGGGGCGGCGCGGGGGCGGCGGGCAGCGGCGGAGGCGGCGCGGGGGCGAAGAACCGGGCGGGGCGGCGGCAGGCGGCCGGCGGGCGGGCGGGGCCCCGGGUCCCCCCGCCGCCGCCGCCGCCGCUGCCGCCGCCUCAGGCCGAGGCCGGGCCGAGGCCGCCGGGCGUCCGGCCCGCGCUCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 3 71 0.0007209805 0.0001043427 2.788631 GCGCGC GCGCGC
RBM14 19 478 0.0036049027 0.0006941687 2.376602 CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
PPRC1 30 780 0.0055875991 0.0011318283 2.303573 CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
HNRNPA1L2 10 314 0.0019826965 0.0004564992 2.118779 GUAGGG,UAGGGA,UAGGGU,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
IGHMBP2 21 813 0.0039653929 0.0011796520 1.749102 AAAAAA AAAAAA
RBM8A 14 611 0.0027036770 0.0008869128 1.608059 ACGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IFIH1 20 904 0.0037851478 0.0013115296 1.529099 CCGCGG,GCCGCG,GGCCCU,GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ANKHD1 6 339 0.0012617159 0.0004927293 1.356520 AGACGU,GACGUA,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SUPV3L1 3 199 0.0007209805 0.0002898408 1.314700 CCGCCC CCGCCC
CNOT4 5 314 0.0010814708 0.0004564992 1.244310 GACAGA GACAGA
PABPC4 22 1251 0.0041456381 0.0018144033 1.192099 AAAAAA,AAAAAG AAAAAA,AAAAAG
AGO2 32 1830 0.0059480894 0.0026534924 1.164534 AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPU 33 1965 0.0061283345 0.0028491350 1.104971 AAAAAA,CCCCCC,GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
IGF2BP1 13 831 0.0025234319 0.0012057377 1.065471 ACCCGU,AGCACC,CACCCG,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPK 149 9304 0.0270367700 0.0134848428 1.003584 AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF1 1 625 0.09090909 0.04100079 1.148773 CCGAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM14 4 53 0.011904762 0.0002720677 5.451429 CGCGGG,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
PPRC1 5 127 0.014285714 0.0006449012 4.469351 CCGCGC,CGGCGC,GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM25 1 53 0.004761905 0.0002720677 4.129501 CGGGCA AUCGGG,CGGGCA,UCGGGC
IFIH1 4 146 0.011904762 0.0007406288 4.006644 GGCCGC,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM8A 1 84 0.004761905 0.0004282547 3.474998 CGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ZC3H10 2 140 0.007142857 0.0007103990 3.329800 GCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
SAMD4A 10 790 0.026190476 0.0039852882 2.716286 CGGGCA,CGGGCC,CGGGUC,CUGGCA,CUGGCC,GCGGGC,GCUGGC CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 CUUGGA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
G3BP1 29 3431 0.071428571 0.0172914148 2.046445 AGGCCG,CAGGCC,CAUCCG,CCAUCC,CCCAGG,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCGCC,CCGCCG,CCGGCC,CGGCAG,CGGCCC,CGGCCG ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
SRSF1 155 20925 0.371428571 0.1054312777 1.816782 AACCGG,AAGAAC,ACAGGA,AGACAG,AGAUGG,AGCAGG,AGCGGG,AGGACC,AGGAGA,CAAGCA,CACUGG,CAGCGG,CCAGGA,CCCAGG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCGCC,CCCGCG,CCCGGG,CCCUGC,CCGAGG,CCGCCG,CCGCGC,CCGGCC,CCGGCG,CCGGGC,CCGUCG,CCUGGG,CGAGGC,CGCCGC,CGCCGG,CGCGCU,CGCGGG,CGCUCC,CGCUGC,CGGAGG,CGGCAG,CGGCCC,CGGCCG,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGC,CGGGGG,CGUCCG,CGUCGG,CUCAGG,GAAGAA,GACAGG,GAGCAG,GAUGCC,GCAGCA,GCAGCG,GCAGGC,GCAGGG,GCCCCA,GCCCCG,GCCGGG,GCGCGG,GCGGAG,GCGGCA,GCGGCG,GCGGGG,GCUGGG,GGAGAU,GGAGCC,GGAGGC,GGCAGA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCG,GGCGGA,GGCGGG,GGGCCG,GGGCGA,GGGCGG,GGGGCG,GGGGGG,GGUCGA,GGUGCU,GGUGGU,UGGAGC,UGGUGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPH3 15 2496 0.038095238 0.0125806127 1.598408 CGGGCG,CGGGGG,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGUCGA AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 18 3198 0.045238095 0.0161174929 1.488911 CAGGAC,CGGGCG,CGGGGG,CUGGGG,GGCGAA,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGUCGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPH1 18 3406 0.045238095 0.0171654575 1.398030 CAGGAC,CGGGCG,CGGGGG,CUGGGG,GGCGAA,GGGCGU,GGGCUG,GGGGCU,GGGGGC,GGGGGG,GGUCGA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
MBNL1 17 3258 0.042857143 0.0164197904 1.384100 AUGCCG,CCGCUG,CGCUGC,CUGCCC,CUGCCG,CUGCCU,CUGCUU,CUUGCU,GCGCUC,GCUGCU,GCUUGC,GUGCUG,UGCUGC,UUGCUC ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
RBM4 5 1094 0.014285714 0.0055169287 1.372636 CCUUCC,CGCGGG,GCGCGG CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPK 14 3244 0.035714286 0.0163492543 1.127276 CAUCCC,CCAUCC,CCCCAA,CCCCCA,CCCCCC,CCCCUU,GCCCAG,GCCCCC,GGGGGG,UCCCCC,UCCCCU,UCCCUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGA,CGGAGG,GGAGAU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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