ENSG00000171045:-:8:142330900:142354763

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000171045:-:8:142330900:142354763 ENSG00000171045 MSTRG.32164.6 - 8 142330901 142354763 932 CUCAGUGUGGAGGCUGCUGGCCCUGCCAUCUGUAAGAAGAUGUCAUACGGAUCCAUCGCCCGUGGAGGUGGCCUGGGGAGCCGUGGCCCUUUCGGGGGACCUUCGAGACAAGGCUGUCAGCCCCUAGAGUGCGCUAGAUGUUGGACCGAGUAUGGAAUCCGCCAUUUCCCCUGCCCGUCGCCAGAGAGCAAGCUGCAGAACCGCUGUGUGGGGAAGGACGGGGAAGGUGAUCUGGGGCCAGCAGGCACGCCUAUUGUCCCAAGGGCCAGGAAGCGAGGGCCUGGGGUUGCCCCUGAAGGCAGCCGGAUGCCGGAGCCCACCUCAUCACCCACCAUUGGCCCGAGGAAGGACUCGGCUGCUGGGCCCCAUGGCCGGAUGGCGGGGCCCAGCACUACCCGGGCCAAGAAGAGGAAGCCCAACUUCUGCCCGCAGGAGACCGAGGUGCUGGUGUCCAAGGUGAGCAAGCACCACCAGCUGCUGUUUGGCACGGGGCUGCUGAAGGCCGAGCCCACUCGCAGGUACCGCGUGUGGAGCCGCAUCCUGCAGGCCGUGAAUGCGCUGGGCUACUGUCGCCGCGACGUUGUGGACCUGAAGCACAAGUGGCGGGACCUACGAGCCGUCGUGCGGCGCAAGCUGGGCGACCUCCGGAAGGCGGCCCAUGGCCCCAGCCCUGGUUCCGGCAAGCCCCAGGCCCUGGCUCUCACGCCCGUGGAGCAGGUGGUGGCCAAGACCUUCUCUUGCCAGGCCCUGCCCUCCGAGGGCUUCAGUCUGGAGCCGCCCAGAGCCACCCAGGUCGAUCCGUGCAACCUCCAGGAGCUGUUCCAGGAGAUGUCGGCCAACGUCUUCCGAAUCAACUCCAGUGUGACCUCCUUGGAGCGGAGCCUUCAGUCCUUAGGGACACCGAGUGACACGCAGGAGCUUCGGGACAGCCUCUCAGUGUGGAGGCUGCUGGCCCUGCCAUCUGUAAGAAGAUGUCAUACGG circ
ENSG00000171045:-:8:142330900:142354763 ENSG00000171045 MSTRG.32164.6 - 8 142330901 142354763 22 CGGGACAGCCUCUCAGUGUGGA bsj
ENSG00000171045:-:8:142330900:142354763 ENSG00000171045 MSTRG.32164.6 - 8 142354754 142354963 210 CAAGAGGCCACCUUGAAGGGGCUCUGUGGGGGGGUUGCUGUUUGGGGGCUGGUGAGAAGCCUGGAGUAGCCUAGGGAAUGGGUACAAUGGAGCCAGGGUCUUGGGGCUGGGGAGGGGCCGGCGGCCCCUGUGCACCCUGAAUUGGAGCUUUAAUCCCCAUGUCUUCCCCCUCUUCCCCCUGCUUUUCGUGUUUCCUCCAGCUCAGUGUGG ie_up
ENSG00000171045:-:8:142330900:142354763 ENSG00000171045 MSTRG.32164.6 - 8 142330701 142330910 210 GGGACAGCCUGUGAGUGUGUGGGCCAUGGUAUCUCUUUGCCUGGGCGUGGUGCACAUUGGGGGGCAGGGGCGGGAGUGUGGUCCUCCUGUGCACACGGGCUUUGUCCACACAGCUGCUUGCGCACAGCUGCCUGGACACACAUGUGCGCACAUAUGCACACACGCCUGCGGAUAAGCCUAGUCAGUGCUGUGAACCUGAGACUGGGCCCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SUPV3L1 1 199 0.002145923 0.0002898408 2.888266 CCGCCC CCGCCC
HNRNPA1L2 2 314 0.003218884 0.0004564992 2.817876 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM8A 4 611 0.005364807 0.0008869128 2.596662 AUGCGC,GUGCGC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IFIH1 5 904 0.006437768 0.0013115296 2.295310 GCCGCG,GGCCCU CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ANKHD1 1 339 0.002145923 0.0004927293 2.122731 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA3 11 2140 0.012875536 0.0031027457 2.053015 AGGAGC,CCAAGG,GCCAAG,GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
IGF2BP1 3 831 0.004291845 0.0012057377 1.831682 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SRSF11 2 688 0.003218884 0.0009985015 1.688724 AAGAAG AAGAAG
RBM24 9 2357 0.010729614 0.0034172229 1.650702 AGAGUG,AGUGUG,GAGUGA,GUGUGA,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBMY1A1 1 489 0.002145923 0.0007101099 1.595484 CAAGAC ACAAGA,CAAGAC
SSB 4 1260 0.005364807 0.0018274462 1.553697 CUGUUU,GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ESRP2 7 2150 0.008583691 0.0031172377 1.461330 GGGAAG,GGGGAA,GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
CELF5 4 1415 0.005364807 0.0020520728 1.386444 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
EIF4B 3 1179 0.004291845 0.0017100607 1.327551 CUUGGA,GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
G3BP1 43 14282 0.047210300 0.0206989801 1.189542 ACACGC,ACCCAC,ACGCAG,ACGCCC,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CCACCC,CCAGGC,CCAUCG,CCCACC,CCCAGG,CCCCAG,CCCCUA,CCCGCA,CCCUAG,CCCUCC,CCGCAG,CCGCCC,CCGGCA,CCUACG,CCUCCG,CGGCCC,CUCGGC,UCCGCC,UCGGCC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
HNRNPM 2 999 0.003218884 0.0014492040 1.151300 GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPA2B1 24 8607 0.026824034 0.0124747476 1.104516 AAGAAG,AGGAGC,CAAGAA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GGAGCC,GGGGCC,UAGGGA,UUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
CELF4 4 1782 0.005364807 0.0025839306 1.053959 GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPH1 29 10717 0.032188841 0.0155325680 1.051264 AAGGCG,AAGGUG,AGGAAG,CGAGGG,CGGGGG,CUGGGG,GAAGGU,GAGGAA,GGAAGG,GGGAAG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGUCGA,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHSRP 1 35 0.09090909 0.002357873 5.268867 AGCCUC ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
SRSF6 2 68 0.13636364 0.004519256 4.915230 CCUCUC,UCUCAG AACCUG,ACCGUC,ACCUGG,AGAAGA,AGCGGA,AGGAAG,AUCCUG,CAACCU,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CCUGGC,CUACAG,CUCAGG,CUCUGG,CUUCUG,GAAGAA,GAGGAA,GCACCU,GCAGCA,GGAAGA,UACAGG,UACUGG,UCCUGG,UGCGGC,UGUGGA,UUACUG,UUCAGG,UUCUGG,UUUCAG
SRSF2 1 479 0.09090909 0.031438302 1.531901 AGCCUC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
IFIH1 3 146 0.009523810 0.0007406288 3.684716 GCGGAU,GGCCCU,GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
RBM8A 1 84 0.004761905 0.0004282547 3.474998 GUGCGC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
HNRNPM 3 222 0.009523810 0.0011235389 3.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
SRP14 2 218 0.007142857 0.0011033857 2.694564 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
RBM24 11 888 0.028571429 0.0044790407 2.673311 AGUGUG,GAGUGU,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
HNRNPLL 7 748 0.019047619 0.0037736800 2.335567 ACACAC,CACACA,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
CELF5 6 669 0.016666667 0.0033756550 2.303726 GUGUGG,GUGUGU,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SSB 4 505 0.011904762 0.0025493753 2.223323 CUGUUU,GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPH3 22 2496 0.054761905 0.0125806127 2.121970 AGGGAA,AUUGGG,GAAGGG,GAGGGG,GGAAUG,GGAGGG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF6 10 1196 0.026190476 0.0060308343 2.118613 GUGGGG,GUGGUG,GUGUGG,UGUGAG,UGUGGG,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
CELF4 6 776 0.016666667 0.0039147521 2.089973 GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPH2 27 3198 0.066666667 0.0161174929 2.048338 AAGGGG,AGGGAA,AUUGGG,CUGGGG,GAAGGG,GAGGGG,GGAAUG,GGAGGG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 27 3406 0.066666667 0.0171654575 1.957457 AAGGGG,AGGGAA,AUUGGG,CUGGGG,GAAGGG,GAGGGG,GGAAUG,GGAGGG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPF 22 3360 0.054761905 0.0169336961 1.693276 AAGGGG,AGGGAA,CUGGGG,GAAGGG,GAGGGG,GGAAUG,GGAGGG,GGGAAU,GGGAGG,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
RBM28 1 340 0.004761905 0.0017180572 1.470761 GAGUAG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GGAGCC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 3 731 0.009523810 0.0036880290 1.368689 GGGAAU,GGGGAG,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
YBX1 6 1321 0.016666667 0.0066606207 1.323237 CCACAC,CCCUGC,CCUGCG,CUGCGG,GCCUGC,UCCAGC AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
SAMD4A 3 790 0.009523810 0.0039852882 1.256855 CUGGAC,GCGGGA,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
HNRNPA2B1 9 2033 0.023809524 0.0102478839 1.216213 AAGGGG,AGAAGC,AGGGGC,GAAGCC,GGAGCC,GGGGCC,UAGGGA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
MBNL1 15 3258 0.038095238 0.0164197904 1.214175 CCUGCU,CUGCCU,CUGCGG,CUGCUU,GCUGCU,GCUUGC,GCUUUU,GGCUUU,GUGCUG,UGCUGU,UGCUUU,UUGCCU,UUGCUG ACGCUA,ACGCUC,ACGCUG,ACGCUU,AUGCCA,AUGCCC,AUGCCG,AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUC,CCGCUG,CCGCUU,CCUGCU,CGCUGC,CGCUGU,CGCUUC,CGCUUG,CGCUUU,CUCGCU,CUGCCA,CUGCCC,CUGCCG,CUGCCU,CUGCGG,CUGCUA,CUGCUC,CUGCUG,CUGCUU,CUUGCU,CUUGUG,GCGCUC,GCGCUG,GCGCUU,GCUGCG,GCUGCU,GCUUGC,GCUUGU,GCUUUU,GGCUUU,GUCUCG,GUGCUA,GUGCUC,GUGCUG,GUGCUU,UCCGCU,UCGCUA,UCGCUC,UCGCUG,UCGCUU,UCUCGC,UCUGCU,UGCGGC,UGCUGC,UGCUGU,UGCUUC,UGCUUU,UGUCUC,UUCGCU,UUGCCA,UUGCCC,UUGCCG,UUGCCU,UUGCUA,UUGCUC,UUGCUG,UUGCUU,UUGUGC,UUUGCU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,GUGUUU,UGUGUG,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SNRPA 8 1947 0.021428571 0.0098145909 1.126536 AUGCAC,CCUGCU,GUUUCC,UGCACA,UGCACC,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 ACACAC,CACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGGG,GGAGUA,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

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  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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