circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000223573_ENSG00000130254:-:19:5591747:5595497
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000223573_ENSG00000130254:-:19:5591747:5595497 | ENSG00000223573_ENSG00000130254 | MSTRG.16244.7 | - | 19 | 5591748 | 5595497 | 612 | AGCUCCAAGAGUCAGGAUCGCAAGUCAGAAAGCAAAGAAAAGAGAGACAUCUUGUCGUUUGAUAAAAUCAAAGAACAAAGGGAGAGAGAGCGCCAGAGGCAGCGGGAACGGGAGAUCCGCGAAACGGAGAGGCGGCGGGAGCGCGAGCAGCGGGAGCGGGAGCAACGCCUCGAGGCCUUCCAUGAGCGGAAGGAGAAGGCCCGGCUACAGCGGGAACGCCUGCAGCUCGAGUGCCAGCGCCAGCGGCUGGAGCGGGAGCGCAUGGAGCGGGAGCGGCUGGAGCGCGAGCGCAUGCGCGUGGAGCGUGAGCGCAGGAAGGAGCAGGAGCGCAUCCACCGCGAGCGCGAGGAGCUGCGGCGCCAGCAGGAGCAGCUGCGUUACGAGCAGGAGCGGCGGCCCGGGCGGAGGCCCUACGACCUGGACCGACGAGAUGAUGCCUAUUGGCCAGAAGGAAAGCGUGUGGCAAUGGAGGACCGAUAUCGUGCAGACUUUCCCCGGCCAGACCACCGCUUUCACGACUUCGAUCAUCGAGACCGGGGCCAGUACCAGGACCACGCCAUCGACAGGCGGGAGGGUUCGAGGCCAAUGAUGGGAGACCACCGGGAUGGGCAGAGCUCCAAGAGUCAGGAUCGCAAGUCAGAAAGCAAAGAAAAGAGAGACAU | circ |
| ENSG00000223573_ENSG00000130254:-:19:5591747:5595497 | ENSG00000223573_ENSG00000130254 | MSTRG.16244.7 | - | 19 | 5591748 | 5595497 | 22 | GGGAUGGGCAGAGCUCCAAGAG | bsj |
| ENSG00000223573_ENSG00000130254:-:19:5591747:5595497 | ENSG00000223573_ENSG00000130254 | MSTRG.16244.7 | - | 19 | 5595488 | 5595697 | 210 | AGCAGGAUUCUGGAUUAGGCAGUAAAAUGCAAACUUGGAGGGAAGCAGCCUAUGCCUGGGCCUCUGGUCUGGAGACCACAGCCUUCCAUCUACACCAUGUGGGGCCAGAGAAUCUUAGUCUCAUGCACACGUGCAUAAUCUCCAUUGUUUGUUUGUUGCAAUCAUUUUCCUGACAUUAAUAAACCAGUUUUGGUAAACAGAGCUCCAAGA | ie_up |
| ENSG00000223573_ENSG00000130254:-:19:5591747:5595497 | ENSG00000223573_ENSG00000130254 | MSTRG.16244.7 | - | 19 | 5591548 | 5591757 | 210 | GGAUGGGCAGGUGAGUAGAGCCCCGAUGCCAAGCCCUGGGGCCACUGUACUGCUGUGCAGGCAUAGCGGACCAUUUCUAGCCAGGCGGCCGCUUGAUCCCAGAGAGGUGGCAACCAAGUCAGCACGUGUGGCGGGUAUGCAAGUGUGGGUUCUGGCCAGCGACUAGAAGUACAAAUAUUUAGUCGGACGUGGUGGCUCAUGCCUGUAAUC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ZC3H10 | 25 | 1053 | 0.042483660 | 0.0015274610 | 4.797701 | CAGCGC,CCAGCG,CGAGCG,GAGCGC,GCAGCG,GGAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| HNRNPM | 4 | 999 | 0.008169935 | 0.0014492040 | 2.495064 | AAGGAA,GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| RBM8A | 2 | 611 | 0.004901961 | 0.0008869128 | 2.466495 | AUGCGC,UGCGCG | ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU |
| MATR3 | 2 | 739 | 0.004901961 | 0.0010724109 | 2.192501 | AUCUUG,CAUCUU | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| PPRC1 | 2 | 780 | 0.004901961 | 0.0011318283 | 2.114704 | CGGCGC,GGCGCC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| HNRNPA3 | 7 | 2140 | 0.013071895 | 0.0031027457 | 2.074851 | AAGGAG,AGGAGC | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| SAMD4A | 13 | 3992 | 0.022875817 | 0.0057866714 | 1.983018 | CGGGAA,CUGGAC,GCGGGA,GCUGGA | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| SRSF9 | 57 | 20254 | 0.094771242 | 0.0293536261 | 1.690911 | AGGAAA,AGGACC,AGGAGA,AGGAGC,AUGAGC,GAAGGA,GAAGGC,GAUGCC,GGAAAG,GGAACG,GGAAGG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGAGG,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG | AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAA,AUGAAC,AUGACA,AUGACC,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCC,GGAGCG,GGAGGA,GGAGGC,GGAUGC,GGAUGG,GGGAGC,GGGAGG,GGGUGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAAAG,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGACCA,UGACCG,UGAGAA,UGAGAG,UGAGCA,UGAGCG,UGAUGC,UGAUGG,UGGAGC,UGGAGG,UGGAUU,UGGUGC,UGGUGG |
| SRP14 | 1 | 847 | 0.003267974 | 0.0012289250 | 1.411000 | CGCCUG | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| HNRNPAB | 3 | 1782 | 0.006535948 | 0.0025839306 | 1.338829 | ACAAAG,CAAAGA | AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA |
| RBMX | 10 | 4925 | 0.017973856 | 0.0071387787 | 1.332151 | AAGGAA,AGAAGG,AGGAAG,AUCAAA,GAAGGA,GGAAGG | AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA |
| IFIH1 | 1 | 904 | 0.003267974 | 0.0013115296 | 1.317146 | GGCCCU | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| SRSF10 | 28 | 13860 | 0.047385621 | 0.0200874160 | 1.238157 | AAAAGA,AAAGAA,AAAGAG,AAAGGG,AAGAAA,AAGAGA,AAGGAA,AAGGAG,AAGGGA,ACAAAG,AGAGAC,AGAGAG,CAAAGA,GAGAAG,GAGACA,GAGACC,GAGAGA,GAGAGC,GAGAGG,GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| LIN28A | 8 | 4315 | 0.014705882 | 0.0062547643 | 1.233366 | AGGAGA,CGGAGA,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| NOVA2 | 7 | 4013 | 0.013071895 | 0.0058171047 | 1.168095 | ACCACC,AGACAU,AUCAUC,GAGACA,GAGGCA,GAGUCA | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| SRSF1 | 195 | 99563 | 0.320261438 | 0.1442885423 | 1.150293 | AAAAGA,AAAGAA,AAAGAG,AAGAAC,AAGAGA,AAGGAG,ACAGCG,AGAAGG,AGAGAC,AGCAGG,AGCGGA,AGCGGG,AGGAAA,AGGAAG,AGGACC,AGGAGA,AGGAGC,AUGGAG,CAACGC,CAAUGG,CACCGG,CAGAGC,CAGAGG,CAGCGG,CCAAUG,CCACCG,CCACGC,CCAGCA,CCAGCG,CCAGGA,CCAUGA,CCCCGG,CCCGGC,CCCGGG,CCGACG,CCGCGA,CCGGCC,CCGGGA,CCGGGC,CCGGGG,CCUCGA,CCUGCA,CCUGGA,CGACAG,CGACGA,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGCAGG,CGCGAG,CGGAAG,CGGAGG,CGGCCA,CGGCCC,CGGCGC,CGGCGG,CGGGCG,CGGGGC,CGUGCA,CGUGGA,CUACGA,GAAGGA,GAAGGC,GACAGG,GACCGA,GACGAG,GAGAAG,GAGACA,GAGCAG,GAGCGG,GAGGAC,GAGGAG,GAGGCA,GAUGAU,GAUGCC,GCAGCG,GCAGGA,GCCCGG,GCGAGC,GCGCCA,GCGCGA,GCGGAA,GCGGAG,GCGGCG,GCGGGA,GCUCCA,GCUCGA,GCUGCG,GCUGGA,GGAAAG,GGAAGG,GGACCA,GGACCG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGCAGA,GGCCCG,GGCGGA,GGCGGG,GGGCCA,GGGCGG,UGAUGC,UGAUGG,UGGAGC,UGGAGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA |
| TRA2B | 13 | 7329 | 0.022875817 | 0.0106226650 | 1.106678 | AAAGAA,AAGAAC,AAGGAA,AGAAGG,AGGAAA,AGGAAG,GAAGGA,GGAAGG | AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA |
| RBM6 | 1 | 1054 | 0.003267974 | 0.0015289102 | 1.095893 | CAUCCA | AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA |
| RBFOX1 | 1 | 1077 | 0.003267974 | 0.0015622419 | 1.064779 | GCAUGC | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| SRSF1 | 2 | 625 | 0.13636364 | 0.04100079 | 1.733736 | CAGAGC,GGCAGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.03143830 | 1.531901 | GCAGAG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| OAS1 | 1 | 35 | 0.004761905 | 0.0001813785 | 4.714464 | GCAUAA | GCAUAA |
| ZC3H10 | 2 | 140 | 0.007142857 | 0.0007103990 | 3.329800 | CAGCGA,CCAGCG | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| EIF4B | 3 | 226 | 0.009523810 | 0.0011436921 | 3.057840 | CUUGGA,GUCGGA,UCGGAC | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| MATR3 | 2 | 216 | 0.007142857 | 0.0010933091 | 2.707800 | AAUCUU,AUCUUA | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| SRP14 | 2 | 218 | 0.007142857 | 0.0011033857 | 2.694564 | CCUGUA,GCCUGU | CCUGUA,CGCCUG,CUGUAG,GCCUGU |
| IFIH1 | 1 | 146 | 0.004761905 | 0.0007406288 | 2.684716 | GGCCGC | CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG |
| RBM28 | 2 | 340 | 0.007142857 | 0.0017180572 | 2.055723 | AGUAGA,GAGUAG | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| G3BP2 | 3 | 490 | 0.009523810 | 0.0024738009 | 1.944809 | AGGAUU,GGAUGG,GGAUUA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| HNRNPLL | 4 | 748 | 0.011904762 | 0.0037736800 | 1.657495 | ACACCA,ACCACA,GCAAAC,GCACAC | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| SAMD4A | 4 | 790 | 0.011904762 | 0.0039852882 | 1.578783 | CGGGUA,CUGGCC,CUGGUC,GCGGGU | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| CELF6 | 6 | 1196 | 0.016666667 | 0.0060308343 | 1.466536 | GUGGGG,GUGGUG,GUGUGG,UGUGGG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | GCCAAG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| SNRPA | 8 | 1947 | 0.021428571 | 0.0098145909 | 1.126536 | AUGCAC,GCAGUA,GGGUAU,GGUAUG,GUAUGC,UGCACA,UUCCUG,UUUCCU | ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU |
| CELF1 | 4 | 1097 | 0.011904762 | 0.0055320435 | 1.105654 | GUUUGU,UGUUUG | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| RBM24 | 3 | 888 | 0.009523810 | 0.0044790407 | 1.088349 | AGUGUG,GUGUGG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| CELF5 | 2 | 669 | 0.007142857 | 0.0033756550 | 1.081334 | GUGUGG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| HNRNPDL | 11 | 2689 | 0.028571429 | 0.0135530028 | 1.075961 | ACACCA,ACAUUA,ACUAGA,AUUAGG,CUAGCC,GACUAG,GAGUAG,GAUUAG,GGAUUA,UAGGCA,UUAGGC | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
| LIN28A | 3 | 900 | 0.009523810 | 0.0045395002 | 1.069005 | GGAGGG,UGGAGA,UGGAGG | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| ZRANB2 | 5 | 1360 | 0.014285714 | 0.0068571141 | 1.058900 | AGGGAA,GGUAAA,GUGGUG,UGGUAA,UGGUGG | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.