ENSG00000271793:-:6:85636966:85637356

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000271793:-:6:85636966:85637356 ENSG00000271793 ENST00000682106 - 6 85636967 85637356 291 GCACUCUUGGAAAGAACAGGCUACACACUUGAUGUGACCACUGGACAGAGGAAGUAUGGAGGACCACCUCCAGAUUCCGUUUAUUCAGGUCAGCAGCCUUCUGUUGGCACUGAGAUAUUUGUGGGAAAGAUCCCAAGAGAUCUAUUUGAGGAUGAACUUGUUCCAUUAUUUGAGAAAGCUGGACCUAUAUGGGAUCUUCGUCUAAUGAUGGAUCCACUCACUGGUCUCAAUAGAGGUUAUGCGUUUGUCACUUUUUGUACAAAAGAAGCAGCUCAGGAGGCUGUUAAACUGGCACUCUUGGAAAGAACAGGCUACACACUUGAUGUGACCACUGGACAGAG circ
ENSG00000271793:-:6:85636966:85637356 ENSG00000271793 ENST00000682106 - 6 85636967 85637356 22 CUGUUAAACUGGCACUCUUGGA bsj
ENSG00000271793:-:6:85636966:85637356 ENSG00000271793 ENST00000682106 - 6 85637347 85637556 210 CCCUGGACUUCUGAUAAUAAUUUAGGAGUAUAACAAGUACACAUUUAAGGGGAAAUUUUAAAACAGACAUCACAAACCUGUUUUUAUAAGGGAACAUGCCAAGAUAAUUGGAAAGAUUUGAGCAAGAUGGAUGUUAACUGCUAAAUAUAUGGGUGUGGUCUAGUGAAUUAAAUGUAUUAAUGACGUUUGAACUUUUCAAGGCACUCUUGG ie_up
ENSG00000271793:-:6:85636966:85637356 ENSG00000271793 ENST00000682106 - 6 85636767 85636976 210 UGUUAAACUGGUAAGUUGUCCUUUUUUCCCCUUCAGUUUUCACGUUCACUGUCUUUAAUAUCAAGUUUUUUUCUUAGUGUGCCUAAGAGUUUACCAAACAUUUUUUGAAGUACUGAUUUAGGCAGGUUUUUUUUUUCCCACAUCACUGUGCAAGCAUUGUAGUGUUAUUCUUUGCAUGUAUAGUUGAUAGGAUUCAGCAUCUAAAAGGCG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 314 0.006872852 0.0004564992 3.912225 GACAGA GACAGA
HNRNPA0 1 453 0.006872852 0.0006579386 3.384884 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF11 1 688 0.006872852 0.0009985015 2.783072 AAGAAG AAGAAG
EIF4B 2 1179 0.010309278 0.0017100607 2.591824 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ZFP36L2 2 1277 0.010309278 0.0018520827 2.476723 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RC3H1 3 1786 0.013745704 0.0025897275 2.408109 CCUUCU,CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NONO 2 1498 0.010309278 0.0021723567 2.246610 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
G3BP2 2 1644 0.010309278 0.0023839405 2.112523 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
PABPN1 1 1222 0.006872852 0.0017723764 1.955224 AAAAGA AAAAGA,AGAAGA
SSB 1 1260 0.006872852 0.0018274462 1.911080 GCUGUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS3 1 1283 0.006872852 0.0018607779 1.885003 CUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SAMD4A 5 3992 0.020618557 0.0057866714 1.833138 CUGGAC,CUGGCA,CUGGUC,GCUGGA CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
TRA2A 9 6871 0.034364261 0.0099589296 1.786846 AAAGAA,AAGAAG,AGAAAG,AGAGGA,AGGAAG,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPCL1 2 2062 0.010309278 0.0029897078 1.785867 CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
QKI 3 2805 0.013745704 0.0040664663 1.757133 ACACAC,CACACU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPD 3 2837 0.013745704 0.0041128408 1.740774 AGAUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ESRP2 2 2150 0.010309278 0.0031172377 1.725603 GGGAAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RALY 1 1553 0.006872852 0.0022520629 1.609662 UUUUUG UUUUUC,UUUUUG,UUUUUU
ENOX1 3 3195 0.013745704 0.0046316558 1.569381 GGACAG,UGGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZNF638 1 1773 0.006872852 0.0025708878 1.418642 UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
TRA2B 7 7329 0.027491409 0.0106226650 1.371835 AAAGAA,AAGAAC,AAGAAG,AGGAAG,GAAAGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
MSI1 2 2770 0.010309278 0.0040157442 1.360204 AGGAAG,AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SRSF4 3 3740 0.013745704 0.0054214720 1.342224 AAGAAG,AGGAAG,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PUM2 1 1890 0.006872852 0.0027404447 1.326499 UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ELAVL3 2 2867 0.010309278 0.0041563169 1.310566 UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
DAZAP1 5 5964 0.020618557 0.0086445016 1.254089 AGAUAU,AGGAAG,AGGAUG,AGGUUA,AGUAUG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ELAVL4 4 5105 0.017182131 0.0073996354 1.215383 UCUAAU,UUAUUU,UUUAUU,UUUGUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ZRANB2 2 3173 0.010309278 0.0045997733 1.164309 AGGUUA,GAGGUU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
CPEB2 1 2261 0.006872852 0.0032780993 1.068049 CUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM46 3 4554 0.013745704 0.0066011240 1.058197 AAUGAU,AUGAUG,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
FXR2 2 3434 0.010309278 0.0049780156 1.050301 GACAGA,GGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPC 2 3471 0.010309278 0.0050316361 1.034844 CUUUUU,UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SAMD4A 1 10 0.09090909 0.0007204611 6.97936 CUGGCA CGGGAA,CGGGAC,CGGGCA,CGGGUA,CUGGAA,CUGGCA,CUGGCC,CUGGUA,GCUGGU

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
ANKHD1 1 56 0.004761905 0.0002871826 4.051499 GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACG ACGACA,ACGACG,AUGACA,AUGACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
CPEB4 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
DDX19B 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
EIF4A3 9 691 0.023809524 0.0034864974 2.771688 UUUUUU UUUUUU
U2AF2 14 1071 0.035714286 0.0054010480 2.725190 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 13 1117 0.033333333 0.0056328094 2.565039 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 2 263 0.007142857 0.0013301088 2.424957 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
SYNCRIP 9 1041 0.023809524 0.0052498992 2.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 9 1051 0.023809524 0.0053002821 2.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
CPEB2 13 1487 0.033333333 0.0074969770 2.152585 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 12 1381 0.030952381 0.0069629182 2.152286 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 AGAUAA,AUUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
AKAP1 1 221 0.004761905 0.0011185006 2.089973 AUAUAU AUAUAU,UAUAUA
HNRNPC 17 2006 0.042857143 0.0101118501 2.083489 AUUUUU,CUUUUU,GGAUUC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPU 9 1136 0.023809524 0.0057285369 2.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS1 16 1945 0.040476190 0.0098045143 2.045555 AUUUAA,CUAAAA,CUAAAU,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
A1CF 4 598 0.011904762 0.0030179363 1.979904 AGUAUA,AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
NOVA2 10 1434 0.026190476 0.0072299476 1.856985 AGACAU,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AAUUAA,AUUUAA,GAAUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
NOVA1 9 1428 0.023809524 0.0071997179 1.725526 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
TIAL1 35 5597 0.085714286 0.0282043531 1.603618 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUU,CAGUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
FUS 10 1711 0.026190476 0.0086255542 1.602353 GGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUUA,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TIA1 24 5140 0.059523810 0.0259018541 1.200411 AUUUUU,CUUUUC,CUUUUU,GUUUUC,GUUUUU,UCCUUU,UUUUAU,UUUUCU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AAUUUA,AGUAUA,AGUUUA,UAGGAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCCUUC,CUUCUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
HNRNPK 14 3244 0.035714286 0.0163492543 1.127276 CAAACC,CCAAAC,CCCCUU,UCCCAC,UCCCCU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AUCUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
PPIE 40 9262 0.097619048 0.0466696896 1.064677 AAAUAU,AAAUUU,AAUAAU,AAUAUA,AAUUAA,AAUUUA,AAUUUU,AUAAUA,AUAAUU,AUAUAU,AUUAAA,AUUAAU,AUUUAA,AUUUUA,AUUUUU,UAAAUA,UAAUAA,UAAUAU,UAAUUU,UAUUAA,UUAAAA,UUAAAU,UUAAUA,UUAUAA,UUUAAA,UUUAAU,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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