circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000101868:+:X:24888005:24888122
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000101868:+:X:24888005:24888122 | ENSG00000101868 | ENST00000611764 | + | X | 24888006 | 24888122 | 117 | GGCUGGUUGAUAUGUGAAGAGCCAACCUGUCGCAAUCGAACUCGUCACCUUCCCCUUCAAUUCUCCCGAACUGGGCCUCUUUGCCCAGCCUGCAUGAAAGCUACACUUCAACCAGAGGGCUGGUUGAUAUGUGAAGAGCCAACCUGUCGCAAUCGAACUCGUCACCU | circ |
| ENSG00000101868:+:X:24888005:24888122 | ENSG00000101868 | ENST00000611764 | + | X | 24888006 | 24888122 | 22 | UUCAACCAGAGGGCUGGUUGAU | bsj |
| ENSG00000101868:+:X:24888005:24888122 | ENSG00000101868 | ENST00000611764 | + | X | 24887806 | 24888015 | 210 | UUAACUUAAUGGUUUUCCUAACUUCUAAGUUUGGGGCAUAGAUCUAUCUAAUUAACAUGUCAGGAGAGAGAGAUAACUAGAGUUAUGUCAGAAUUUCUGAGAAAAGAUUAAAUAAAAUGAGUCUAUCUUGAUAACCAAAAAAAGGUUUAUUACUUGUAUUUGUCGAUGGUGAUAAGUCUGAAGUUUUCCCUUCUCUCCAGGGCUGGUUGA | ie_up |
| ENSG00000101868:+:X:24888005:24888122 | ENSG00000101868 | ENST00000611764 | + | X | 24888113 | 24888322 | 210 | UCAACCAGAGGUAACAGUCUCAUAAUGCUAAAGAACCAUGUAGAAGAGGGUAGAGGGCUGCUUGCUUUGAGAAGUAGAUACUGAGUAUUUGCCCUAUGAAGAUGCCCUACUACCAUAUGCAUAUACUAAUCUUAUUUUUAAAAAAUACAGAUUUCAGAAAGAUACAUGCUUUCUUUUUUUCACAUGUCAUGAGCAAUACUAUAUUUAUAU | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| NXF1 | 1 | 286 | 0.01709402 | 0.0004159215 | 5.361036 | AACCUG | AACCUG |
| RBFOX2 | 1 | 452 | 0.01709402 | 0.0006564894 | 4.702576 | UGCAUG | UGACUG,UGCAUG |
| RBFOX1 | 2 | 1077 | 0.02564103 | 0.0015622419 | 4.036764 | GCAUGA,UGCAUG | AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG |
| RBM4 | 3 | 3065 | 0.03418803 | 0.0044432593 | 2.943801 | CCUCUU,CCUUCC,CUCUUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
| RC3H1 | 1 | 1786 | 0.01709402 | 0.0025897275 | 2.722619 | CCCUUC | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| CELF2 | 1 | 1886 | 0.01709402 | 0.0027346479 | 2.644064 | UAUGUG | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| NELFE | 1 | 3028 | 0.01709402 | 0.0043896388 | 1.961317 | CUGGUU | CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA |
| HNRNPK | 5 | 9304 | 0.05128205 | 0.0134848428 | 1.927115 | CCAACC,CCCCUU,GCCCAG,UCCCCU,UCCCGA | AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU |
| SRSF3 | 9 | 16536 | 0.08547009 | 0.0239654858 | 1.834461 | ACUUCA,CACUUC,CCUCUU,CUACAC,CUCGUC,CUUCAA,UUCAAC,UUCUCC | AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC |
| KHSRP | 8 | 15466 | 0.07692308 | 0.0224148375 | 1.778962 | ACCUUC,CACCUU,CAGCCU,CCCCUU,CCCUUC,CCUUCC,GGCCUC,UGCAUG | ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU |
| SAMD4A | 1 | 3992 | 0.01709402 | 0.0057866714 | 1.562686 | GCUGGU | CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU |
| IGF2BP2 | 3 | 8408 | 0.03418803 | 0.0121863560 | 1.488225 | CAAUUC,GAACUC,GCAAUC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| PCBP1 | 5 | 13384 | 0.05128205 | 0.0193975949 | 1.402576 | CCAACC,CCCUUC,CCUCUU,CCUUCC,CUUCCC | AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| RBM46 | 1 | 4554 | 0.01709402 | 0.0066011240 | 1.372708 | AUGAAA | AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU |
| YBX1 | 2 | 7119 | 0.02564103 | 0.0103183321 | 1.313244 | CAACCA,GCCUGC | AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU |
| PCBP2 | 3 | 11045 | 0.03418803 | 0.0160079069 | 1.094707 | CCCUUC,CCUUCC,CUUCCC | AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU |
| YTHDC1 | 1 | 5576 | 0.01709402 | 0.0080822104 | 1.080670 | GCCUGC | GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC |
| HNRNPDL | 2 | 8759 | 0.02564103 | 0.0126950266 | 1.014191 | ACCAGA,UGUCGC | AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| HNRNPH3 | 1 | 61 | 0.09090909 | 0.004060781 | 4.484596 | GGGCUG | AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG |
| HNRNPH2 | 1 | 80 | 0.09090909 | 0.005305214 | 4.098942 | GGGCUG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| HNRNPF | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | GGGCUG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG |
| HNRNPH1 | 1 | 90 | 0.09090909 | 0.005960178 | 3.930997 | GGGCUG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG |
| FMR1 | 1 | 117 | 0.09090909 | 0.007728583 | 3.556149 | GGGCUG | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| SRSF10 | 1 | 160 | 0.09090909 | 0.010544931 | 3.107875 | AGAGGG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF1 | 3 | 625 | 0.18181818 | 0.041000786 | 2.148773 | AGAGGG,CAGAGG,GAGGGC | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
| SRSF2 | 1 | 479 | 0.09090909 | 0.031438302 | 1.531901 | CAGAGG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| TUT1 | 6 | 230 | 0.016666667 | 0.0011638452 | 3.839994 | AAAUAC,AAUACU,AGAUAC,CAAUAC,GAUACU | AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU |
| MATR3 | 3 | 216 | 0.009523810 | 0.0010933091 | 3.122837 | AAUCUU,AUCUUA,AUCUUG | AAUCUU,AUCUUA,AUCUUG,CAUCUU |
| PABPN1 | 2 | 178 | 0.007142857 | 0.0009018541 | 2.985535 | AAAAGA,AGAAGA | AAAAGA,AGAAGA |
| ERI1 | 2 | 228 | 0.007142857 | 0.0011537686 | 2.630147 | UUCAGA,UUUCAG | UUCAGA,UUUCAG |
| IGHMBP2 | 3 | 350 | 0.009523810 | 0.0017684401 | 2.429061 | AAAAAA | AAAAAA |
| PABPC4 | 4 | 462 | 0.011904762 | 0.0023327287 | 2.351448 | AAAAAA,AAAAAG | AAAAAA,AAAAAG |
| RBM41 | 4 | 502 | 0.011904762 | 0.0025342604 | 2.231902 | AUACAU,UACAUG,UACUUG,UUACUU | AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU |
| RBM3 | 4 | 541 | 0.011904762 | 0.0027307537 | 2.124168 | AAUACU,AUACUA,GAUACU | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| RBMS1 | 1 | 217 | 0.004761905 | 0.0010983474 | 2.116204 | AUAUAC | AUAUAC,AUAUAG,GAUAUA,UAUAUA |
| RBM28 | 2 | 340 | 0.007142857 | 0.0017180572 | 2.055723 | AGUAGA,UGUAGA | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| QKI | 6 | 904 | 0.016666667 | 0.0045596534 | 1.869970 | ACUAAU,AUCUAA,AUUAAC,CUAAUC,CUCAUA,UCUAAU | AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU |
| SF1 | 9 | 1294 | 0.023809524 | 0.0065245869 | 1.867580 | ACAGUC,ACUAAU,AUACUA,AUUAAC,UACUAA,UACUGA,UAUACU,UGCUAA | ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC |
| ZCRB1 | 4 | 666 | 0.011904762 | 0.0033605401 | 1.824774 | AAUUAA,ACUUAA,GAUUAA,GGUUUA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| PUM2 | 4 | 764 | 0.011904762 | 0.0038542926 | 1.627001 | GUAGAU,UAAAUA,UAGAUA,UGUAGA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| ZFP36L2 | 4 | 774 | 0.011904762 | 0.0039046755 | 1.608264 | AUUUAU,UAUUUA,UUAUUU,UUUAUU | AUUUAU,UAUUUA,UUAUUU,UUUAUU |
| SART3 | 4 | 777 | 0.011904762 | 0.0039197904 | 1.602690 | AAAAAA,AGAAAA | AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC |
| RC3H1 | 3 | 631 | 0.009523810 | 0.0031841999 | 1.580608 | CCCUUC,CCUUCU,UCCCUU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| TRA2A | 6 | 1133 | 0.016666667 | 0.0057134220 | 1.544539 | AAAGAA,AAGAGG,AGAAAG,AGAAGA,GAAAGA,GAAGAG | AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA |
| AGO2 | 3 | 677 | 0.009523810 | 0.0034159613 | 1.479247 | AAAAAA | AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU |
| SYNCRIP | 5 | 1041 | 0.014285714 | 0.0052498992 | 1.444212 | AAAAAA,UUUUUU | AAAAAA,UUUUUU |
| U2AF2 | 5 | 1071 | 0.014285714 | 0.0054010480 | 1.403262 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| ELAVL4 | 15 | 2916 | 0.038095238 | 0.0146966949 | 1.374119 | AAAAAA,AUCUAA,AUUUAU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUGUAU,UUUAUU,UUUUUA,UUUUUU | AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU |
| KHDRBS3 | 8 | 1646 | 0.021428571 | 0.0082980653 | 1.368689 | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUUAAA,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| HNRNPD | 7 | 1488 | 0.019047619 | 0.0075020153 | 1.344261 | AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU | AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU |
| RBMS3 | 2 | 562 | 0.007142857 | 0.0028365578 | 1.332360 | CAUAUA,CUAUAU | AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC |
| PABPC1 | 6 | 1321 | 0.016666667 | 0.0066606207 | 1.323237 | AAAAAA,ACUAAU,AGAAAA,CUAAUC | AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC |
| HNRNPU | 5 | 1136 | 0.014285714 | 0.0057285369 | 1.318335 | AAAAAA,UUUUUU | AAAAAA,CCCCCC,GGGGGG,UUUUUU |
| PABPC5 | 2 | 596 | 0.007142857 | 0.0030078597 | 1.247764 | AGAAAA,AGAAAG | AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU |
| SRSF10 | 13 | 2937 | 0.033333333 | 0.0148024990 | 1.171125 | AAAAGA,AAAGAA,AAGAGG,AGAGAG,AGAGGG,GAAAGA,GAGAAA,GAGAAG,GAGAGA | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| KHDRBS2 | 4 | 1051 | 0.011904762 | 0.0053002821 | 1.167398 | AAUAAA,AUAAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| PUM1 | 9 | 2172 | 0.023809524 | 0.0109482064 | 1.120844 | AGAAUU,AGAUAA,CAGAAU,CUUGUA,GUAGAU,UAAAUA,UAGAUA,UGUAGA,UUAAUG | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| CPEB4 | 2 | 691 | 0.007142857 | 0.0034864974 | 1.034723 | UUUUUU | UUUUUU |
| DDX19B | 2 | 691 | 0.007142857 | 0.0034864974 | 1.034723 | UUUUUU | UUUUUU |
| EIF4A3 | 2 | 691 | 0.007142857 | 0.0034864974 | 1.034723 | UUUUUU | UUUUUU |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.