ENSG00000114416:+:3:180968050:180970358

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000114416:+:3:180968050:180970358 ENSG00000114416 ENST00000305586 + 3 180968051 180970358 405 GUACAAAUUCUGAGCUGUCUAACCCCUCUGAAACGGAAUCUGAGCGUAAAGACGAGCUGAGUGAUUGGUCAUUGGCAGGAGAAGAUGAUCGAGACAGCCGACAUCAGCGUGACAGCAGGAGACGCCCAGGAGGAAGAGGCAGAAGUGUUUCAGGGGGUCGAGGUCGUGGUGGACCACGUGGUGGCAAAUCCUCCAUCAGUUCUGUGCUCAAAGAUCCAGACAGCAAUCCAUACAGCUUACUUGAUAAUACAGAAUCAGAUCAGACUGCAGACACUGAUGCCAGCGAAUCUCAUCACAGUACUAACCGUCGUAGGCGGUCUCGUAGACGAAGGACUGAUGAAGAUGCUGUUCUGAUGGAUGGAAUGACUGAAUCUGAUACAGCUUCAGUUAAUGAAAAUGGGCUAGGUACAAAUUCUGAGCUGUCUAACCCCUCUGAAACGGAAUCUGAGCGUAAA circ
ENSG00000114416:+:3:180968050:180970358 ENSG00000114416 ENST00000305586 + 3 180968051 180970358 22 AAAUGGGCUAGGUACAAAUUCU bsj
ENSG00000114416:+:3:180968050:180970358 ENSG00000114416 ENST00000305586 + 3 180967851 180968060 210 AUACUAUACUAGUAUAUUAAUAGUAUAAUAAUUGAUUAUUCCUUAGUACGUUUCAGAUUGAUUUUAACUUUCAUGGAUCUUUCUUUGAAGCAGCCAAACAGUAUUGCUUAUUUAAACAAUAAUUUGUAGGACAUAAUUUUGAACAUUUUAAAAGGCUUUUUAUAGAAAUCUAAGUGGUUUAUGUUCUUUUCUUUUCCAAGGUACAAAUUC ie_up
ENSG00000114416:+:3:180968050:180970358 ENSG00000114416 ENST00000305586 + 3 180970349 180970558 210 AAUGGGCUAGGUAUGUAAGCACUUAGGGAAGAGAAAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAUAAUUGUAAACUAUUGUUAGUAUAUGAAGCUUUUUUCAAAGAAAUAUGCAAUUCACAAAUUGACUUUUUCUUAGUGUUUACUUUGAACAAGGUAGAUAGCUUUUUGUCUAUCUUAAAUGUUUAGUUCUCAGAUUUGUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 3 339 0.009876543 0.0004927293 4.325139 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBFOX2 1 452 0.004938272 0.0006564894 2.911163 UGACUG UGACUG,UGCAUG
RBM3 6 2152 0.017283951 0.0031201361 2.469752 AAGACG,AGACGA,GAAACG,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ERI1 1 632 0.004938272 0.0009173461 2.428468 UUUCAG UUCAGA,UUUCAG
ENOX1 9 3195 0.024691358 0.0046316558 2.414406 AAUACA,AGACAG,AUACAG,CAGACA,CAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZC3H10 2 1053 0.007407407 0.0015274610 2.277833 CAGCGA,CCAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM6 2 1054 0.007407407 0.0015289102 2.276465 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZRANB2 7 3173 0.019753086 0.0045997733 2.102443 AGGUAC,CGGUCU,GUAAAG,GUGGUG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
SSB 2 1260 0.007407407 0.0018274462 2.019140 GCUGUU,UGCUGU CUGUUU,GCUGUU,UGCUGU,UGUUUU
FXR2 7 3434 0.019753086 0.0049780156 1.988435 AGACAG,AGACGA,GACGAA,GACGAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RBM41 2 1318 0.007407407 0.0019115000 1.954263 UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPM 1 999 0.004938272 0.0014492040 1.768746 GAAGGA AAGGAA,GAAGGA,GGGGGG
RBFOX1 1 1077 0.004938272 0.0015622419 1.660388 UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
A1CF 2 1642 0.007407407 0.0023810421 1.637376 AUCAGU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPAB 2 1782 0.007407407 0.0025839306 1.519401 AAAGAC,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RC3H1 2 1786 0.007407407 0.0025897275 1.516168 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PABPN1 1 1222 0.004938272 0.0017723764 1.478321 AGAAGA AAAAGA,AGAAGA
PABPC1 6 4443 0.017283951 0.0064402624 1.424242 ACAAAU,ACUAAC,CAAAUC,CGAAUC,CUAACC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
MSI1 3 2770 0.009876543 0.0040157442 1.298339 AGGAAG,AGGAGG,UAGGUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
QKI 3 2805 0.009876543 0.0040664663 1.280231 ACUAAC,CUAACC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPLL 4 3534 0.012345679 0.0051229360 1.268963 ACUGCA,AGACGA,CAUACA ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
CELF5 1 1415 0.004938272 0.0020520728 1.266924 GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
YBX2 1 1480 0.004938272 0.0021462711 1.202174 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF4 4 3740 0.012345679 0.0054214720 1.187250 AGAAGA,AGGAAG,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 1 1498 0.004938272 0.0021723567 1.184745 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM46 5 4554 0.014814815 0.0066011240 1.166257 AAUGAA,AUGAAA,AUGAAG,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBM24 2 2357 0.007407407 0.0034172229 1.116144 GAGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
G3BP2 1 1644 0.004938272 0.0023839405 1.050658 GGAUGG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MSI1 1 23 0.09090909 0.001571915 5.853829 UAGGUA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG
KHSRP 1 35 0.09090909 0.002357873 5.268867 UAGGUA ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
DAZAP1 1 36 0.09090909 0.002423369 5.229338 UAGGUA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
ZRANB2 1 45 0.09090909 0.003012837 4.915230 AGGUAC AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 UAGGUA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 34 221 0.083333333 0.0011185006 6.219256 AUAUAU,UAUAUA AUAUAU,UAUAUA
RBMS1 17 217 0.042857143 0.0010983474 5.286129 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 36 562 0.088095238 0.0028365578 4.956851 AAUAUA,AUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM2 22 764 0.054761905 0.0038542926 3.828635 GUAGAU,GUAUAU,UAGAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
A1CF 10 598 0.026190476 0.0030179363 3.117408 AGUAUA,AUAAUU,CAGUAU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
PUM1 27 2172 0.066666667 0.0109482064 2.606271 AAUGUU,AAUUGU,ACAUAA,AUUGUA,GUAGAU,GUAUAU,UAGAUA,UAUAUA,UGUAAA,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 GUAUUG,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
PPIE 72 9262 0.173809524 0.0466696896 1.896949 AAAUAU,AAUAAU,AAUAUA,AAUUUU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUUAAU,AUUAUU,AUUUAA,AUUUUA,UAAUAA,UAAUUU,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUA,UUAAAA,UUAAAU,UUAAUA,UUAUUU,UUUAAA,UUUAUA,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
ELAVL2 68 9826 0.164285714 0.0495112858 1.730378 AAUUUG,AAUUUU,AUUAUU,AUUUAA,AUUUUA,AUUUUG,CAUUUU,CUUUCU,CUUUUU,GAUUUU,GUAUUG,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUGU,UAUUUA,UCUUUU,UGAUUU,UUACUU,UUAGUU,UUAUGU,UUAUUU,UUCUUU,UUGAUU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPC 9 2006 0.023809524 0.0101118501 1.235492 CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 6 1487 0.016666667 0.0074969770 1.152585 CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AAUUUU,AUUUUA,AUUUUG,CUUUUC,CUUUUU,UUAAAU,UUAUUU,UUUAAA,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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