ENSG00000117523:+:1:171523220:171537473

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000117523:+:1:171523220:171537473 ENSG00000117523 MSTRG.2588.1 + 1 171523221 171537473 1665 AGGCCUUCGAGGAAGAGGCCCACCUCCUUCAUGGGCCUCUGAGCCUGAACGCCCAUCCAUUCUUAGUGCAUCAGAACUGAAGGAGCUUGAUAAAUUUGAUAACCUAGAUGCUGAAGCUGAUGAAGGUUGGGCAGGUGCUCAGAUGGAAGUAGAUUAUACAGAGCAACUGAAUUUCAGUGAUGAUGAUGAACAAGGAAGUAACAGUCCUAAAGAGAAUAACAGUGAGGAUCAAGGUUCAAAAGCCUCUGAAAACAACGAAAACAAAAAAGAAACAGAUGAAGUUUCCAACACUAAAUCAUCUUCCCAAAUACCUGCCCAACCAUCAGUAGCAAAAGUUCCCUAUGGGAAAGGACCUUCAUUUAAUCAGGAACGUGGAACAUCUUCACAUCUGCCACCACCUCCAAAGUUGCUUGCACAGCAGCAUCCACCUCCAGAUCGACAGGCAGUACCUGGAAGACCAGGCCCCUUUCCCUCCAAGCAGCAAGUAGCUGAUGAAGAUGAAAUAUGGAAGCAAAGACGAAGACAACAAUCAGAAAUUUCUGCAGCAGUAGAACGUGCUCGUAAACGGCGUGAAGAGGAAGAGCGAAGAAUGGAAGAACAAAGGAAGGCAGCUUGUGCGGAGAAACUGAAACGAUUGGAUGAGAAGCUUGGCAUCCUGGAAAAACAACCAUCUCCAGAGGAAAUUAGGGAAAGGGAGCGAGAAAAAGAACGGGAGCGUGAGAAAGAACUUGAAAAAGAACAAGAACAGGAGCGAGAGAAGGAGAGGGAAAAAGACAGAGAGAGACAGCAGGAAAAGGAGAAAGAGCUGGAGAAGGAGCAGGAAAAACAAAGAGAAAUGGAGAAAGAAAGAAAGCAAGAAAAAGAAAAAGAACUAGAACGGCAGAAAGAAAAGGAAAAAGAACUACAAAAGAUGAAAGAACAAGAAAAGGAAUGUGAGCUGGAGAAGGAAAGGGAAAAAUUAGAGGAGAAAAUUGAACCCAGAGAACCUAAUUUAGAGCCCAUGGUAGAAAAACAAGAAAGUGAAAACAGCUGUAAUAAAGAGGAGGAACCCGUUUUCACUAGACAAGACAGCAAUCGCAGUGAAAAGGAAGCCACACCAGUGGUGCAUGAAACAGAACCAGAAUCAGGGUCUCAACCUCGGCCGGCUGUAUUAUCUGGCUAUUUCAAACAGUUUCAGAAGUCUUUACCUCCACGAUUCCAGCGGCAGCAGAUGAAACAGCAGCAGUGGCAGCAGCAGCAACAGCAAGGUGUACUUCCACAGACUGUUCCUUCACAACCGUCCAGUAGUACUGUCCCUCCUCCACCACACAGACCUCUUUAUCAGCCUAUGCAGCCUCAUCCUCAGCAUUUGGCUUCUAUGGGUUUUGAUCCAAGGUGGCUCAUGAUGCAGUCCUACAUGGAUCCUCGAAUGAUGUCAGGAAGACCUGCUAUGGAUAUUCCACCCAUUCAUCCUGGAAUGAUUCCUCCUAAACCAUUAAUGAGAAGAGACCAGAUGGAAGGGUCACCGAACAGUUCUGAGUCAUUUGAGCAUAUAGCUCGAUCUGCAAGAGAUCACGCAAUUUCCCUUUCUGAGCCUCGUAUGCUGUGGGGGUCAGAUCCCUAUCCUCAUGCUGAGCCUCAACAAGCAACUACUCCCAAAGCAACAGAAGAGCCUGAGGAUGUAAGAGGCCUUCGAGGAAGAGGCCCACCUCCUUCAUGGGCCUCUGAGCCUGAAC circ
ENSG00000117523:+:1:171523220:171537473 ENSG00000117523 MSTRG.2588.1 + 1 171523221 171537473 22 GAGGAUGUAAGAGGCCUUCGAG bsj
ENSG00000117523:+:1:171523220:171537473 ENSG00000117523 MSTRG.2588.1 + 1 171523021 171523230 210 GCUGUUACUUAAGAGUUACGUAUUAUCCUAUCAUUAUGUAUUAAUAUUAAUUUUUUCAUACACAUGUCCAUGCAGAACAUAUUAGGUAUCUUGGUGUAGAAAACACUAAUGUUGAAAUGAACUAAAUUCCAAUCUUUUAGUAUUCUCCCAGUUUAGUAUCAUAAACUUUUGUAUCUUUUCCAUGACCUGCCUUUCAUUAGAGGCCUUCGA ie_up
ENSG00000117523:+:1:171523220:171537473 ENSG00000117523 MSTRG.2588.1 + 1 171537464 171537673 210 AGGAUGUAAGGUAAUAAAUUAUUUCAAUUUAAUAGAUGAUACAGAAUAUUUUGGUAAAAGGAAAACUGUGUAGUGUUUCUGAAGAUCAUUCCAAUUUAGGACUGAAGCAUAAAUCUGGUUUCCUUCUAUUUAAUUUAGCAUGCUACGCUUACUCUUUGGACAUAUUCUCUGUAUUCAUUAGGGCAUUUUGUAACCUGGUUCUGUACUCAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 5 489 0.003603604 0.0007101099 2.343326 ACAAGA,CAAGAC ACAAGA,CAAGAC
HNRNPM 10 999 0.006606607 0.0014492040 2.188649 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
PABPC3 12 1234 0.007807808 0.0017897669 2.125146 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA1L2 2 314 0.001801802 0.0004564992 1.980756 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
SART3 24 2634 0.015015015 0.0038186524 1.975270 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPN1 10 1222 0.006606607 0.0017723764 1.898224 AAAAGA,AGAAGA AAAAGA,AGAAGA
ANKHD1 2 339 0.001801802 0.0004927293 1.870573 AGACGA,GACGAA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
PABPC5 20 2400 0.012612613 0.0034795387 1.857899 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2A 59 6871 0.036036036 0.0099589296 1.855378 AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 115 13860 0.069669670 0.0200874160 1.794239 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGAGA,GAGAGG,GAGGAA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
NONO 11 1498 0.007207207 0.0021723567 1.730179 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
TRA2B 56 7329 0.034234234 0.0106226650 1.688294 AAAGAA,AAGAAC,AAGAAU,AAGGAA,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZC3H10 7 1053 0.004804805 0.0015274610 1.653342 CCAGCG,GAGCGA,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
RBM42 2 407 0.001801802 0.0005912752 1.607539 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
PABPC4 8 1251 0.005405405 0.0018144033 1.574908 AAAAAA,AAAAAG AAAAAA,AAAAAG
HNRNPAB 11 1782 0.007207207 0.0025839306 1.479873 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CNOT4 1 314 0.001201201 0.0004564992 1.395793 GACAGA GACAGA
ERI1 3 632 0.002402402 0.0009173461 1.388940 UUCAGA,UUUCAG UUCAGA,UUUCAG
PABPC1 27 4443 0.016816817 0.0064402624 1.384713 AAAAAA,AAAAAC,AGAAAA,CAAACA,CAAAUA,CGAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM46 26 4554 0.016216216 0.0066011240 1.296654 AAUCAU,AAUGAU,AUCAAG,AUGAAA,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
YBX2 7 1480 0.004804805 0.0021462711 1.162646 AACAAC,AACAUC,ACAACA,ACAACG,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SRSF4 19 3740 0.012012012 0.0054214720 1.147721 AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMX 25 4925 0.015615616 0.0071387787 1.129240 AAGGAA,AAGUAA,AGAAGG,AGGAAG,AGUAAC,GAAGGA,GGAAGG,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZFP36 141 28400 0.085285285 0.0411588414 1.051094 AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAACAA,AAAGAA,AAAGCA,AAAGGA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,ACAAAG,ACAAGC,ACAAGG,ACCUCC,ACCUCU,ACCUGC,ACCUUC,ACUUCC,AGAAAG,AGCAAA,AGGAAA,AUAAAG,AUAAAU,AUUUAA,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUUU,CCUUUC,GCAAAG,GGAAAG,UAAAGA,UCCUCC,UCCUUC,UCUUCC,UUGUGC,UUUAAU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
RBM28 3 822 0.002402402 0.0011926949 1.010253 AGUAGA,AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TRA2A 1 54 0.09090909 0.003602305 4.657432 AAGAGG AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SFPQ 3 153 0.18181818 0.010086455 4.172005 AAGAGG,GUAAGA,UAAGAG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GCAGGC,GGAAGA,GGAGAG,GGAGGA,GGAGGG,GGGGGA,GUAAGA,GUAAUG,GUAGUG,GUAGUU,GUCUGG,GUGAUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUUG,UAGAGA,UAGAUC,UAGUGG,UAGUGU,UAGUUG,UCGGAA,UCUAAG,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGCAGG,UGGAGA,UGGAGC,UGGAGG,UGGUUU,UUAAUG,UUAGUG,UUAGUU,UUGAAG,UUGGUU
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AAGAGG AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF10 1 160 0.09090909 0.010544931 3.107875 AAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF1 1 625 0.09090909 0.041000786 1.148773 AAGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
NXF1 1 43 0.004761905 0.0002216848 4.424957 AACCUG AACCUG
HNRNPA0 3 200 0.009523810 0.0010126965 3.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBM28 4 340 0.011904762 0.0017180572 2.792689 GUGUAG,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
MATR3 2 216 0.007142857 0.0010933091 2.707800 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGC AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
QKI 6 904 0.016666667 0.0045596534 1.869970 ACACUA,ACUAAU,AUCAUA,CACUAA,UAACCU,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 7 1091 0.019047619 0.0055018138 1.791631 AAUGAA,AUCAUA,AUCAUU,AUGAUA,GAUCAU,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAUUUA,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZCRB1 3 666 0.009523810 0.0033605401 1.502846 ACUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUAUU,AAUGUU,CAGAAU,GUAAUA,UAAUAU,UAAUGU,UGUAGA,UGUCCA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AUACAG,CAUACA,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
SART3 3 777 0.009523810 0.0039197904 1.280762 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
A1CF 2 598 0.007142857 0.0030179363 1.242939 UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCUUCU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 CUGGUU,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCU,CUCUUU,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
PPIE 39 9262 0.095238095 0.0466696896 1.029053 AAAUUA,AAUAAA,AAUAUU,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAUUA,AUAUUU,AUUAAU,AUUAUU,AUUUAA,AUUUUU,UAAAUU,UAAUAA,UAAUAU,UAAUUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAUA,UUAAUU,UUAUUU,UUUAAU,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUA,AAUUUU,AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUUG,AUUUUU,CAUUUU,CUUUUA,UAAUUU,UAUUAU,UAUUUA,UAUUUU,UCUUUU,UGUAUU,UUAAUU,UUACUU,UUAUGU,UUAUUU,UUCAUU,UUGUAU,UUUAAU,UUUAGU,UUUCAU,UUUUAG,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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