ENSG00000131747:-:17:40391505:40411818

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000131747:-:17:40391505:40411818 ENSG00000131747 ENST00000423485 - 17 40391506 40411818 3478 GUAAAAGGAUUUCGUAGUUAUGUGGACAUGUAUUUGAAGGACAAGUUGGAUGAAACUGGUAACUCCUUGAAAGUAAUACAUGAACAAGUAAACCACAGGUGGGAAGUGUGUUUAACUAUGAGUGAAAAAGGCUUUCAGCAAAUUAGCUUUGUCAACAGCAUUGCUACAUCCAAGGGUGGCAGACAUGUUGAUUAUGUAGCUGAUCAGAUUGUGACUAAACUUGUUGAUGUUGUGAAGAAGAAGAACAAGGGUGGUGUUGCAGUAAAAGCACAUCAGGUGAAAAAUCACAUGUGGAUUUUUGUAAAUGCCUUAAUUGAAAACCCAACCUUUGACUCUCAGACAAAAGAAAACAUGACUUUACAACCCAAGAGCUUUGGAUCAACAUGCCAAUUGAGUGAAAAAUUUAUCAAAGCUGCCAUUGGCUGUGGUAUUGUAGAAAGCAUACUAAACUGGGUGAAGUUUAAGGCCCAAGUCCAGUUAAACAAGAAGUGUUCAGCUGUAAAACAUAAUAGAAUCAAGGGAAUUCCCAAACUCGAUGAUGCCAAUGAUGCAGGGGGCCGAAACUCCACUGAGUGUACGCUUAUCCUGACUGAGGGAGAUUCAGCCAAAACUUUGGCUGUUUCAGGCCUUGGUGUGGUUGGGAGAGACAAAUAUGGGGUUUUCCCUCUUAGAGGAAAAAUACUCAAUGUUCGAGAAGCUUCUCAUAAGCAGAUCAUGGAAAAUGCUGAGAUUAACAAUAUCAUCAAGAUUGUGGGUCUUCAGUACAAGAAAAACUAUGAAGAUGAAGAUUCAUUGAAGACGCUUCGUUAUGGGAAGAUAAUGAUUAUGACAGAUCAGGACCAAGAUGGUUCCCACAUCAAAGGCUUGCUGAUUAAUUUUAUCCAUCACAACUGGCCCUCUCUUCUGCGACAUCGUUUUCUGGAGGAAUUUAUCACUCCCAUUGUAAAGGUAUCUAAAAACAAGCAAGAAAUGGCAUUUUACAGCCUUCCUGAAUUUGAAGAGUGGAAGAGUUCUACUCCAAAUCAUAAAAAAUGGAAAGUCAAAUAUUACAAAGGUUUGGGCACCAGCACAUCAAAGGAAGCUAAAGAAUACUUUGCAGAUAUGAAAAGACAUCGUAUCCAGUUCAAAUAUUCUGGUCCUGAAGAUGAUGCUGCUAUCAGCCUGGCCUUUAGCAAAAAACAGAUAGAUGAUCGAAAGGAAUGGUUAACUAAUUUCAUGGAGGAUAGAAGACAACGAAAGUUACUUGGGCUUCCUGAGGAUUACUUGUAUGGACAAACUACCACAUAUCUGACAUAUAAUGACUUCAUCAACAAGGAACUUAUCUUGUUCUCAAAUUCUGAUAACGAGAGAUCUAUCCCUUCUAUGGUGGAUGGUUUGAAACCAGGUCAGAGAAAGGUUUUGUUUACUUGCUUCAAACGGAAUGACAAGCGAGAAGUAAAGGUUGCCCAAUUAGCUGGAUCAGUGGCUGAAAUGUCUUCUUAUCAUCAUGGUGAGAUGUCACUAAUGAUGACCAUUAUCAAUUUGGCUCAGAAUUUUGUGGGUAGCAAUAAUCUAAACCUCUUGCAGCCCAUUGGUCAGUUUGGUACCAGGCUACAUGGUGGCAAGGAUUCUGCUAGUCCACGAUACAUCUUUACAAUGCUCAGCUCUUUGGCUCGAUUGUUAUUUCCACCAAAAGAUGAUCACACGUUGAAGUUUUUAUAUGAUGACAACCAGCGUGUUGAGCCUGAAUGGUACAUUCCUAUUAUUCCCAUGGUGCUGAUAAAUGGUGCUGAAGGAAUCGGUACUGGGUGGUCCUGCAAAAUCCCCAACUUUGAUGUGCGUGAAAUUGUAAAUAACAUCAGGCGUUUGAUGGAUGGAGAAGAACCUUUGCCAAUGCUUCCAAGUUACAAGAACUUCAAGGGUACUAUUGAAGAACUGGCUCCAAAUCAAUAUGUGAUUAGUGGUGAAGUAGCUAUUCUUAAUUCUACAACCAUUGAAAUCUCAGAGCUUCCCGUCAGAACAUGGACCCAGACAUACAAAGAACAAGUUCUAGAACCCAUGUUGAAUGGCACCGAGAAGACACCUCCUCUCAUAACAGACUAUAGGGAAUACCAUACAGAUACCACUGUGAAAUUUGUUGUGAAGAUGACUGAAGAAAAACUGGCAGAGGCAGAGAGAGUUGGACUACACAAAGUCUUCAAACUCCAAACUAGUCUCACAUGCAACUCUAUGGUGCUUUUUGACCACGUAGGCUGUUUAAAGAAAUAUGACACGGUGUUGGAUAUUCUAAGAGACUUUUUUGAACUCAGACUUAAAUAUUAUGGAUUAAGAAAAGAAUGGCUCCUAGGAAUGCUUGGUGCUGAAUCUGCUAAACUGAAUAAUCAGGCUCGCUUUAUCUUAGAGAAAAUAGAUGGCAAAAUAAUCAUUGAAAAUAAGCCUAAGAAAGAAUUAAUUAAAGUUCUGAUUCAGAGGGGAUAUGAUUCGGAUCCUGUGAAGGCCUGGAAAGAAGCCCAGCAAAAGGUUCCAGAUGAAGAAGAAAAUGAAGAGAGUGACAACGAAAAGGAAACUGAAAAGAGUGACUCCGUAACAGAUUCUGGACCAACCUUCAACUAUCUUCUUGAUAUGCCCCUUUGGUAUUUAACCAAGGAAAAGAAAGAUGAACUCUGCAGGCUAAGAAAUGAAAAAGAACAAGAGCUGGACACAUUAAAAAGAAAGAGUCCAUCAGAUUUGUGGAAAGAAGACUUGGCUACAUUUAUUGAAGAAUUGGAGGCUGUUGAAGCCAAGGAAAAACAAGAUGAACAAGUCGGACUUCCUGGGAAAGGGGGGAAGGCCAAGGGGAAAAAAACACAAAUGGCUGAAGUUUUGCCUUCUCCGCGUGGUCAAAGAGUCAUUCCACGAAUAACCAUAGAAAUGAAAGCAGAGGCAGAAAAGAAAAAUAAAAAGAAAAUUAAGAAUGAAAAUACUGAAGGAAGCCCUCAAGAAGAUGGUGUGGAACUAGAAGGCCUAAAACAAAGAUUAGAAAAGAAACAGAAAAGAGAACCAGGUACAAAGACAAAGAAACAAACUACAUUGGCAUUUAAGCCAAUCAAAAAAGGAAAGAAGAGAAAUCCCUGGUCUGAUUCAGAAUCAGAUAGGAGCAGUGACGAAAGUAAUUUUGAUGUCCCUCCACGAGAAACAGAGCCACGGAGAGCAGCAACAAAAACAAAAUUCACAAUGGAUUUGGAUUCAGAUGAAGAUUUCUCAGAUUUUGAUGAAAAAACUGAUGAUGAAGAUUUUGUCCCAUCAGAUGCUAGUCCACCUAAGACCAAAACUUCCCCAAAACUUAGUAACAAAGAACUGAAACCACAGAAAAGUGUCGUGUCAGACCUUGAAGCUGAUGAUGUUAAGGGCAGUGUACCACUGUCUUCAAGCCCUCCUGCUACACAUUUCCCAGAUGAAACUGAAAUUACAAACCCAGUUCCUAAAAAGAAUGUGACAGUGAAGAAGACAGCAGCAAAAAGUAAAAGGAUUUCGUAGUUAUGUGGACAUGUAUUUGAAGGACAAGUUGGA circ
ENSG00000131747:-:17:40391505:40411818 ENSG00000131747 ENST00000423485 - 17 40391506 40411818 22 AGCAGCAAAAAGUAAAAGGAUU bsj
ENSG00000131747:-:17:40391505:40411818 ENSG00000131747 ENST00000423485 - 17 40411809 40412018 210 GAUCUCACUAUGUUGCCCAGGGUGGUCUUGAACUCCUGGGCUCAAGUGAUCCACCCACCUCGGCCUGUGUCCUUUAAUGACCAUUCCCUUAUGCCUAUCAGUGAACAUCAUUGCAUUGGUUUUGGAAAGUCCUCAUAGUCUAUCAUUGAACCUAUUUUUUAAUAACUUUCUUAAUACUGUUACCUUUAAUUCCUGUACAGGUAAAAGGAU ie_up
ENSG00000131747:-:17:40391505:40411818 ENSG00000131747 ENST00000423485 - 17 40391306 40391515 210 GCAGCAAAAAGUAAGCCUAAAUCUUUGAGAUGGGUUAAUGUUGCAAUUACCUAACUGGUUUCCACGUGUCUAUUUCAAUUUUUUUAUUGCCAAAACUUACUAUUGAUAUUACAGAUUAAAUGUUUUCCAAUUGGAAGCAAUUUCUUUUCGAUCUUUAUAAUCAAAAUUAGUAGUCAAGGCUGUUCCAAAACAGUAAGUUAUCUCUAUUGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPN1 23 1222 0.006900518 0.0017723764 1.961020 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPAB 28 1782 0.008338125 0.0025839306 1.690156 AAAGAC,AAGACA,ACAAAG,AGACAA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC3 19 1234 0.005750431 0.0017897669 1.683898 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SART3 39 2634 0.011500863 0.0038186524 1.590607 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PABPC5 35 2400 0.010350776 0.0034795387 1.572771 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SRSF11 9 688 0.002875216 0.0009985015 1.525834 AAGAAG AAGAAG
RBM46 63 4554 0.018401380 0.0066011240 1.479030 AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPM 13 999 0.004025302 0.0014492040 1.473836 AAGGAA,GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
TRA2B 93 7329 0.027027027 0.0106226650 1.347257 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PABPC1 54 4443 0.015813686 0.0064402624 1.295982 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAU,ACUAAU,AGAAAA,CAAACC,CAAAUA,CAAAUC,CGAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBMY1A1 5 489 0.001725129 0.0007101099 1.280590 ACAAGA ACAAGA,CAAGAC
FXR1 4 411 0.001437608 0.0005970720 1.267693 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM41 15 1318 0.004600345 0.0019115000 1.267037 AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TRA2A 82 6871 0.023864290 0.0099589296 1.260791 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TUT1 7 678 0.002300173 0.0009840095 1.224998 AAAUAC,AAUACU,AGAUAC,CGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC4 13 1251 0.004025302 0.0018144033 1.149602 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM3 22 2152 0.006612996 0.0031201361 1.083695 AAAACU,AAACUA,AAGACG,AAGACU,AAUACU,AGACUA,AUACUA,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ZCRB1 16 1605 0.004887867 0.0023274215 1.070472 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GGAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SRSF10 144 13860 0.041690627 0.0200874160 1.053431 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGAGA,GAGAGC,GAGGAA,GAGGGA,GAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPC4 1 7 0.09090909 0.0005239717 7.438792 AAAAAG AAAAAA,AAAAAG
RBMX 1 34 0.09090909 0.0022923762 5.309509 AAGUAA AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUGUU,AUCAAA,AUCCCA,GAAGGA,GGAAGG,UAAGAC,UCAAAA
DAZAP1 1 36 0.09090909 0.0024233691 5.229338 AGUAAA AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUUAA,AGUUUG,GUAACG,UAGGAA,UAGGUU,UAGUUA
ZFP36 5 126 0.27272727 0.0083180508 5.035070 AAAAAG,AAAAGU,AAAGUA,AAGUAA,AGUAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRP14 2 218 0.007142857 0.001103386 2.694564 CCUGUA,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
EIF4B 2 226 0.007142857 0.001143692 2.642803 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
YBX2 2 263 0.007142857 0.001330109 2.424957 AACAUC,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
SNRPB2 2 288 0.007142857 0.001456066 2.294425 AUUGCA,UAUUGC AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
MATR3 1 216 0.004761905 0.001093309 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
TUT1 1 230 0.004761905 0.001163845 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPC3 1 310 0.004761905 0.001566909 1.603618 AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 325 0.004761905 0.001642483 1.535660 CAGUGA CAGUGA,CAGUGC,CAGUGG,CAGUGU
SSB 2 505 0.007142857 0.002549375 1.486358 GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBM28 1 340 0.004761905 0.001718057 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CPEB4 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.003486497 1.449760 UUUUUU UUUUUU
RBM3 2 541 0.007142857 0.002730754 1.387202 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SNRPA 9 1947 0.023809524 0.009814591 1.278539 AGUAGU,AUUCCU,AUUGCA,GUAGUC,GUUACC,GUUUCC,UUACCU,UUCCUG ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
A1CF 2 598 0.007142857 0.003017936 1.242939 AUCAGU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
U2AF2 4 1071 0.011904762 0.005401048 1.140228 UUUUCC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PUM1 9 2172 0.023809524 0.010948206 1.120844 AAUGUU,UAAUGU,UGUACA,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM46 4 1091 0.011904762 0.005501814 1.113560 AAUCAA,AUCAAA,AUCAUU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPCL1 5 1381 0.014285714 0.006962918 1.036809 AUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC4 1 462 0.004761905 0.002332729 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home