ENSG00000242259_ENSG00000070010:-:22:19447377:19456918

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000242259_ENSG00000070010:-:22:19447377:19456918 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447378 19456918 3533 GUGGACUUUGAUGCUCCCCUGGGCUACAAAGAACCCGAAAGACAAGUCCAGCAUGAGGAGUCGACAGAAGGUGAAGCCGACCACAGUGGCUAUGCUGGAGAGCUGGGCUUCCGCGCUUUCUCUGGAUCUGGCAAUAGACUGGAUGGAAAGAAGAAAGGGGUAGAGCCCAGCCCCUCCCCAAUCAAGCCUGGAGAUAUUAAAAGAGGAAUUCCCAAUUAUGAAUUUAAACUUGGUAAGAUAACUUUCAUCAGAAAUUCACGUCCCCUUGUCAAAAAGGUUGAAGAGGAUGAAGCUGGAGGCAGAUUCGUCGCUUUCUCUGGAGAAGGACAGUCAUUGCGUAAAAAGGGAAGAAAGCCCUAAGUGAGGACUGUUGGCUGAUUGGAAAAUAAUAAAAGAAUCAUUUGCAACAUCUUGGCUUUUAGUUACUGGCACUGACAGGGACGAGCCUCAUCAGAGAAUACUCUGUUACUUAAGAUUUAUUUAGAGUUACCUAAGAAUUAUUAAGUUUGACUUGGAAGUGGAGCAGCAGGACUUUGUAGUUGUAUGCUUGAUUUGGGGAAAGACAAAGAGCUGUCCCUGAGGGCCUGUAGAUAGCUGCCUCCUCACCUCUUCACGCUUUCAGCUUGAGGGGAGCUCCCACUGCCUCAGCAGGAGCAAUUCUGCAUCCCUAAUUCUGUCAAAACCUAUGAAGGUGACUAAAUUGUCUAACAUGAAGUGUUCUUUCUUUUUCUUCAUUUAUCCUUUCUUUUCCUACAUCAAUUGCAUAGGUGUCAGUCUUUGGCCUAAAAAAAGGCUUUAAAUAGACAUGUGUUCUAUAAGUAGUGGCUGUCCCACUACUGUGGCUGCAAUUUAAGUAUUUGACAAAGAAUGUUUCUAUUUUUAUUUUACAUAUUUUUUUCAAAAACACCACUCAGAAGAACCUGAUCUGAAUGAGUUUGCACUUUUAUUCUCAUUUCAUAUGGACAUAACUGGCUCCUUAGUGAACCUGUUCAUAGUGAAACAACUCCAUGGAGAAGCAAACAUGUGAAUGUUAGAAUGAACAAAUGCUAAAGAGAUGUUCCUCUCCUUCUUCCCUACUCCCCAACUCCCAAUUUUAAUUUAUUAAAUCAUCCAAGCUUCUGCUGGCCUGUAUUUUUUAUCAGUAUUUAUUUGGUCUUAGAUCUUCACUUUCUAUAACGUGAGAUCUUUUGACAUGCUAAUCUGAUUAUUUUAAAUUUGUUCCCAUGAGCCACUGUGCCUGGCCCCAUUGGGAAUAAUUCUAAGCCAAGAAUUUCAAGUAAAAACAGGCAAUAACUAAAGCCUAAAUCUAAAUGUUUGAUUAGGUACUAACACAGACUGGUGGUUGGGCCUCUGACCAUAACUGAAGGCCUGUUGGCAGGUGCUCCGUGUUCCAUCUCACCAUUAGAAAAGUGUCCCUCUGGGGCUUCUCCUGGAGAAAGUAGGAAGAAACAAGGCUGCCUGAUCCCUAGGUGGCAAUGGCUAAGCCCAGCAGGGUCCCCCAUGAGCCAGGGCUAACCCUGCUUCCAGACAUGGGGGUCCUGCCCUGGUCAGGGCCCCUCCAACACUCCAGAGAGGAGAGAAUGGUGGCCCCAGGGUCUAUCCACGUCUUCAGUGAAGAGUGUCUAUGAGUGUCAUGAUGUUCAGUACUUGGCCUGUGGCACAAACCAUCAUCACUGGAAAUGGGCGUGGUUUUGGAAGGCAUGAGCACUGUGGGGACUUACCUGAGCCUCCACUGACAAAGUCUCAGUUUUACUAGCAGAGGGAGAAACCCUUGGUGGGUAGACAGCCUUCAUUUGCAGGAUCACAUCAGCUAACAGACUGUCACUUUAUGCAUAAUGAAGAAUGUUACAGUACCUCUGGCUCUGGGUUUUUGUCUUCACUAAGCAACACCUGCUGUGUAUGCAGUGAAACGCCUGGUCCUUUGCUGGAGGCACACUCCCCUGCCUGGACCAGGAUGGAUUCCAUUGCAGAGCCUUUUAAUGACACAGUGGGGCCAGUUGGAGCACUGAUCCUGGUCAUUACUCCUGCACCCUGGCCUGCAGCCUUCCUCUCAGUGUCUUAUUUGGGCUUGGUCCUUGAGCCGGCUGCCUCAACAGCAGGACCCCUGGUAAAACUGCAGCUUUCUGAUCCACCUCCAGGGAGUCUGUCCCAGUGUCAUUCCUGGGACUGGCCCAGCAGUCCCAGGAUUUGUAUCAGUGGAUACUGAGGAUUUGUUAUCAGUGAAGUGGGAGAACCGCAGCAUAGGUACUGCAGGGCGUUUCUGCAAGCCCACCAGCCUCCUCUUUACUUGCCUUUGUUGCCUCUUGUGCAUUGCUCCUUUUUAUAAACGUCCCAGCCAGGCACUGGCGCUCCGCCUAUAAUCCUAGCACUUUGGGAGGCCAAAGUGAGAGGGUCGCUUGAGGCCAAACUAGCCUGGGUAACUUAGCAAGACCCCAUCUUUACAAAAAAAAAAAAAAAAAAUUAAAAAUUAGCCUGGUGAGGCUGUGCAUGCUUUUGGUCCCAGCUGUUCGGAGUCCAGGAGUUUGAGGUUGCAGUAAGCCAUGAACACGCCACGCCACUGCACUAAGCCUGGGUGACACAGCAAGACCCUGUCUCGAAAAAUGAAUAAGGUAAAUGUUACAUGUCUCCCGCACCCUUAGAAUAGAACUACAGACAUCCAAGCCACUCCUACCCCGCUCACCCCUGCUACACACCGCCUCCAUACCUUUGACCGGCCUAUGGCUGUACUCGGAUUGCAUUCUCAGCCUCCACUUCAAGCCUGCGUUCCCUGGGGAGGUCAUUCAACCCUAGAUCCACCAUAUGUCAUGCCCAACCAAUCUCAGUUACUUUGCGAGUUCACCUCCAUCCUGAGUGGACGCUCAAGCAAGACUGCUGGAGCUGCAGAUCUGGGAGGUUCGCUGCACCACCUUGAUGCUCAGUAUGUACUUUUGAAAAUAUACCGGAUUGUUGAGAUUUGAGAAAAUCUCAUAAAGCUGCUGAAAAGAACUGGCCAGAGCCGUGUGAUUUGAGAGGCGGCUGACGUAAGGUAGCUGCGCGGCCCAGGAUGCCCGCCUGGCCCGGGGUGAAUGGCGCUGUCGUCGCGGUGGUCGCGUAGGCUUCGCGCCAGGUCUCGCCCCGGAUUUACCCUGCGACCCCGGCCCUCCGCGCGCGCCGCAGCCGCCCUCGGUUGCUAUUGGUUGCUCGUCCUGUUUGUCGGCGCUUCUCGAAGAAGGGGGCGAAGACGUGAUUGAAUGUGUCGGUGCUCAUUAGUUCUUCUGUCAGUCGAUCACGAGGUGCCGUUUUCUUCAUUUUUCAUUGGCUGGCGGACUGAGGGGCGGGCUUGGCGCGCCGGUCGCCCAGACAUGGCGGACGGCAGCGGCUGGCAGCCGCCGCGCCCCUGCGAGGCCUACCGCGCCGAGUGGAAGCUCUGCCGCAGCGCCAGGCACUUCCUACACCACUACUACGUCCACGGCGAGCGGCCGGCCUGCGAACAGUGGCAGCGCGACCUGGCCAGCUGCCGCGACUGGGAGGAGCGCCGGAACGCCGAGGCCCAGGUGGACUUUGAUGCUCCCCUGGGCUACAAAGAACCCGAAAGACAAGUCCA circ
ENSG00000242259_ENSG00000070010:-:22:19447377:19456918 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447378 19456918 22 CCGAGGCCCAGGUGGACUUUGA bsj
ENSG00000242259_ENSG00000070010:-:22:19447377:19456918 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19456909 19457118 210 GUGUUGAUAUCCUGGCAGCAAUACUUUACUGUAAUUUUGUAAGAUGCUACCGUUGGGAAAACUGGGCAAGUGUACAAGGCAUCUUUUGUAUUAUUUCUUAAAACUGCAUGUGAAUCUACAGUUGUCUCAAUUAAAAACAAAAAAGGAAGCCAAGGGUGGUCAUGUCUCAAUAUUUUACUUUUAAAAUCCUGGAAACACAGGUGGACUUUG ie_up
ENSG00000242259_ENSG00000070010:-:22:19447377:19456918 ENSG00000242259_ENSG00000070010 MSTRG.21629.23 - 22 19447178 19447387 210 CGAGGCCCAGGUGCGCCGGGAGGGAGCGGGGCGGCGCUUCGGAGCGCCUUGCGGGGCCCAGCUUUCCCCACCCCUCCACGCCCCAUGCCCCGCGACCUAGCCGGGGACUGACGGGGUCCCUAUCCUCCUCACGCUUCCUUUCUUUUGAGAGAUUGUGUAAAUUAGCAUAUCAACAGGACUUUCAGAGGGCGUGAAAGACAAAGGAGGAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
DDX58 3 71 0.0011321823 0.0001043427 3.439705 GCGCGC GCGCGC
RBM14 12 478 0.0036795924 0.0006941687 2.406188 CGCGCC,CGCGCG,CGCGGC,GCGCGC,GCGCGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
OAS1 1 77 0.0005660911 0.0001130379 2.324228 GCAUAA GCAUAA
PPRC1 16 780 0.0048117747 0.0011318283 2.087914 CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCG CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
RBM8A 12 611 0.0036795924 0.0008869128 2.052682 CGCGCC,CGCGCG,CGCGCU,GCGCGC,UGCGCG ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
IGHMBP2 15 813 0.0045287291 0.0011796520 1.940745 AAAAAA AAAAAA
PABPC4 18 1251 0.0053778658 0.0018144033 1.567539 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM42 5 407 0.0016982734 0.0005912752 1.522167 AACUAA,AACUAC,ACUAAG,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
HNRNPD 37 2837 0.0107557317 0.0041128408 1.386899 AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZFP36L2 16 1277 0.0048117747 0.0018520827 1.377421 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA0 5 453 0.0016982734 0.0006579386 1.368044 AAUUUA,AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
SRP14 9 847 0.0028304557 0.0012289250 1.203638 CCUGUA,CGCCUG,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
SYNCRIP 18 1634 0.0053778658 0.0023694485 1.182482 AAAAAA,UUUUUU AAAAAA,UUUUUU
NXF1 2 286 0.0008491367 0.0004159215 1.029685 AACCUG AACCUG
ELAVL4 52 5105 0.0150014152 0.0073996354 1.019573 AAAAAA,AUCUAA,AUUUAU,UAUUUA,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MSI1 1 23 0.09090909 0.001571915 5.853829 AGGUGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUGG,UAGGAA,UAGGAG,UAGGUG,UAGUUA,UAGUUG
G3BP1 1 69 0.09090909 0.004584752 4.309509 CCCAGG ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
SRSF9 1 134 0.09090909 0.008842023 3.361976 GGUGGA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 2 625 0.13636364 0.041000786 1.733736 CCCAGG,GGUGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG
SRSF2 1 479 0.09090909 0.031438302 1.531901 CCAGGU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM8A 2 84 0.007142857 0.0004282547 4.059960 GUGCGC,UGCGCC ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ZC3H10 3 140 0.009523810 0.0007103990 3.744837 GAGCGC,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
HNRNPAB 5 351 0.014285714 0.0017734784 3.009919 AAAGAC,AAGACA,ACAAAG,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 CGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
PABPC3 3 310 0.009523810 0.0015669085 2.603618 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
HNRNPA3 3 349 0.009523810 0.0017634019 2.433177 AAGGAG,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACAA,GACAAA,GACGGG,UGACGG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UGUAAA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA,AAAAAC,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
SRSF10 14 2937 0.035714286 0.0148024990 1.270661 AAAGAC,AAAGGA,AAGACA,AAGGAA,AAGGAG,ACAAAG,AGACAA,AGAGGG,GAAAGA,GACAAA,GAGAGA,GAGGAG,GAGGGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
IGF2BP3 5 1348 0.014285714 0.0067966546 1.071676 AAAAAC,AAAACA,AAAAUC,AAACAC,AACACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
LIN28A 3 900 0.009523810 0.0045395002 1.069005 AGGAGA,GGAGGA,GGAGGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home