ENSG00000169062:+:13:114286518:114291792

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000169062:+:13:114286518:114291792 ENSG00000169062 ENST00000375299 + 13 114286519 114291792 326 AUCCAGAAUAUAAGAAGUUUUUAGAAACCUACUGUGUGGAGGAAGAGAAGACCAGUGCCAACCCUGAGACUCUGCUGGGGGAGAUGGAGGCGAAGACAAGAGAGCUCAUUGCUAGAAGAACCACACCUCUUUUGGAAUAUAUUAAAAAUAGAAAAUUAGAAAAGCAGAGAAUUCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGUUAGAAAAGAAACGUUUGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGAUGCAAAAAAAAAGAGACAGAUAAACAGAAGAAAAUUGCAGAGAAAGAAGUAAGGAUUAAGAUCCAGAAUAUAAGAAGUUUUUAGAAACCUACUGUGUGGAGGAAGAGAAG circ
ENSG00000169062:+:13:114286518:114291792 ENSG00000169062 ENST00000375299 + 13 114286519 114291792 22 UAAGGAUUAAGAUCCAGAAUAU bsj
ENSG00000169062:+:13:114286518:114291792 ENSG00000169062 ENST00000375299 + 13 114286319 114286528 210 GUGGUAGAGUUUGCUCCAUUCCAGAAGAUAGCCAAAAAGAAGCUGAGAAAAAAAGAUGCCAAGACUGGAAGCAUCGAAGAUGGUGAGCCCUUUCCAAGUGCUACGUUAUGAAGCUGCCAAAUUAAGAACACUGAGCAAAUGUAAUUCUCCCGUAGUUGGGAAAGAUUAUAUUUAUUUUCUUCCUACUUUUUAAUGUCUAGAUCCAGAAUA ie_up
ENSG00000169062:+:13:114286518:114291792 ENSG00000169062 ENST00000375299 + 13 114291783 114291992 210 AAGGAUUAAGGUAAUUCUGAGGAAACAUUUCCUUUUUCCAAAAAUAGCUCUGCUAUAGUAAUUACACUUUUUACAUAUCUUAGUUCUUUAGAAUUUUGAAAACAUUCUGAAUUAAUCUAAUAUUGUGUUGUUAUUUUUUUCCAUCUUUUCCAUCUUUCUUUCCAUCCUACAGCAGUGGUUAUCACAGUGCGUCCUGAGCCCUGGGAGUCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPN1 13 1222 0.042944785 0.0017723764 4.598726 AAAAGA,AGAAGA AAAAGA,AGAAGA
SRSF11 6 688 0.021472393 0.0009985015 4.426575 AAGAAG AAGAAG
SRSF4 28 3740 0.088957055 0.0054214720 4.036353 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
IGHMBP2 5 813 0.018404908 0.0011796520 3.963657 AAAAAA AAAAAA
PABPC4 7 1251 0.024539877 0.0018144033 3.757561 AAAAAA,AAAAAG AAAAAA,AAAAAG
CNOT4 1 314 0.006134969 0.0004564992 3.748372 GACAGA GACAGA
TRA2A 42 6871 0.131901840 0.0099589296 3.727330 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
TRA2B 34 7329 0.107361963 0.0106226650 3.337265 AAAGAA,AAGAAC,AAGAAG,AGAAGA,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
AKAP1 1 426 0.006134969 0.0006188101 3.309488 AUAUAU AUAUAU,UAUAUA
SART3 10 2634 0.033742331 0.0038186524 3.143424 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
RBMY1A1 1 489 0.006134969 0.0007101099 3.110942 ACAAGA ACAAGA,CAAGAC
PABPC5 8 2400 0.027607362 0.0034795387 2.988085 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SYNCRIP 5 1634 0.018404908 0.0023694485 2.957467 AAAAAA AAAAAA,UUUUUU
SRSF10 48 13860 0.150306748 0.0200874160 2.903546 AAAAGA,AAAGAA,AAAGAG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,GAAAGA,GAGAAA,GAGAAG,GAGACA,GAGAGA,GAGAGC,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF5 29 8869 0.092024540 0.0128544391 2.839752 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA,UGCAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
AGO2 5 1830 0.018404908 0.0026534924 2.794126 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBMS3 3 1283 0.012269939 0.0018607779 2.721150 AAUAUA,AUAUAU AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
HNRNPU 5 1965 0.018404908 0.0028491350 2.691495 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
SRSF7 43 14481 0.134969325 0.0209873716 2.685038 AAGAAG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGGAAG,AGGCGA,AUAGAA,CAGAGA,CUGAGA,GAAGAA,GAGACU,GAGAGA,GAGGAA,UCGAGA AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SNRPB2 2 991 0.009202454 0.0014376103 2.678346 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
NONO 3 1498 0.012269939 0.0021723567 2.497795 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
PABPC1 10 4443 0.033742331 0.0064402624 2.389368 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF5 2 1415 0.009202454 0.0020520728 2.164937 GUGUGG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPD 5 2837 0.018404908 0.0041128408 2.161883 AAAAAA AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
LIN28A 8 4315 0.027607362 0.0062547643 2.142026 AGGAGA,CGGAGG,GGAGAU,GGAGGA,UGGAGG AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
RBM6 1 1054 0.006134969 0.0015289102 2.004552 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZCRB1 2 1605 0.009202454 0.0023274215 1.983286 GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBMX 8 4925 0.027607362 0.0071387787 1.951304 AAGAAG,AAGUAA,AGGAAG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
G3BP2 2 1644 0.009202454 0.0023839405 1.948670 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
MSI1 4 2770 0.015337423 0.0040157442 1.933317 AGGAAG,AGGAGG,AGUAAG,AGUUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
EIF4B 1 1179 0.006134969 0.0017100607 1.843009 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF4 2 1782 0.009202454 0.0025839306 1.832451 GUGUGG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
HNRNPAB 2 1782 0.009202454 0.0025839306 1.832451 AAGACA,AGACAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
DAZAP1 9 5964 0.030674847 0.0086445016 1.827201 AAAAAA,AGGAAA,AGGAAG,AGUAAG,AGUUAG AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
FUS 5 3648 0.018404908 0.0052881452 1.799257 AAAAAA AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
KHDRBS2 2 1858 0.009202454 0.0026940701 1.772231 AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ACO1 1 1283 0.006134969 0.0018607779 1.721150 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
SRSF6 32 21880 0.101226994 0.0317100317 1.674583 AAGAAG,AGAAGA,AGGAAG,CCACAC,CUACUG,GAAGAA,GAGGAA,GCUCAU,GGAAGA,UGUGGA AACCUG,AAGAAG,ACCGGG,ACCGUC,ACCUGG,AGAAGA,AGCACC,AGCGGA,AGGAAG,AUCAAC,AUCCUG,AUCGUA,CAACCU,CACACG,CACAGG,CACCUG,CACGGA,CACUCG,CACUGG,CAGCAC,CAUCCU,CCACAC,CCACAG,CCACUC,CCACUG,CCCGGC,CCUCAC,CCUCAG,CCUCUC,CCUCUG,CCUGGC,CGCGUC,CUACAC,CUACAG,CUACUC,CUACUG,CUCACG,CUCAGG,CUCAUC,CUCUCG,CUCUGG,CUUCAC,CUUCAG,CUUCUC,CUUCUG,GAAGAA,GACGUC,GAGGAA,GAUCAA,GCACCU,GCAGCA,GCCGGA,GCCGUC,GCUCAU,GGAAGA,UACACG,UACAGG,UACGUC,UACUCG,UACUGG,UCAACC,UCACAC,UCACAG,UCACUC,UCACUG,UCAUCC,UCCGGA,UCCUGG,UCUCAC,UCUCAG,UCUCUC,UCUCUG,UGCGGA,UGCGGC,UGCGUA,UGCGUC,UGCGUG,UGUGGA,UUACAC,UUACAG,UUACUC,UUACUG,UUCACG,UUCAGG,UUCUCG,UUCUGG,UUUCAC,UUUCAG,UUUCUC,UUUCUG
KHDRBS3 4 3429 0.015337423 0.0049707696 1.625515 AGAUAA,AUAAAC,AUUAAA,GAUAAA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
FXR2 4 3434 0.015337423 0.0049780156 1.623413 AGACAA,AGACAG,GACAAG,GACAGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
ESRP2 2 2150 0.009202454 0.0031172377 1.561750 GGGAAG,GGGGAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 2 2152 0.009202454 0.0031201361 1.560410 GAAACG,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ELAVL4 6 5105 0.021472393 0.0073996354 1.536957 AAAAAA,UUUUUA AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
RBM24 2 2357 0.009202454 0.0034172229 1.429194 GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SFPQ 29 24050 0.092024540 0.0348548043 1.400661 AAGAAC,AAGAGG,AGAGAG,AGAGGA,GAAGAA,GAAGAG,GAGGAA,GGAAGA,GGAGAG,GGAGGA,GGGGGA,UAAGGA,UGGAGG AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
HNRNPH1 12 10717 0.039877301 0.0155325680 1.360271 AGGAAG,AGGCGA,CUGGGG,GAGGAA,GGAGGA,GGCGAA,GGGAAG,GGGGAG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
PPIE 21 18315 0.067484663 0.0265436196 1.346195 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUUA,AAUAUA,AUAUAA,AUAUAU,AUAUUA,AUUAAA,UAAAAA,UAUAUU,UAUUAA,UUAAAA,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPA1 20 18070 0.064417178 0.0261885646 1.298508 AAAAAA,AAAGAG,AAGAGG,AGAGGA,AGGAAG,AGUUAG,AUAGAA,AUUAGA,GAGGAA,GAGGAG,GGAGGA,UUUAGA AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
HNRNPF 11 10561 0.036809816 0.0153064921 1.265947 AGGAAG,AGGCGA,CUGGGG,GAGGAA,GGAGGA,GGCGAA,GGGAAG,GGGGAG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH2 10 9711 0.033742331 0.0140746688 1.261459 AGGCGA,CUGGGG,GGAGGA,GGCGAA,GGGAAG,GGGGAG,GGGGGA,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
CELF2 1 1886 0.006134969 0.0027346479 1.165701 UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZFP36 29 28400 0.092024540 0.0411588414 1.160816 AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAUA,AAAGAA,AAAGCA,AAGAAA,AAGUAA,ACCUCU,AGAAAG,AGGAAA,AUAAAC,UAAACA,UAAGGA,UCUUUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
HNRNPA2B1 8 8607 0.027607362 0.0124747476 1.146042 AAGAAG,AGAAGC,GCGAAG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
SRSF2 91 88240 0.282208589 0.1278792060 1.141980 AAAAGA,AAAGAG,AAGAAG,AAGAGA,AAGCAG,ACCAGU,ACGGAG,AGAAGA,AGAAGC,AGAAUA,AGAGAA,AGAGGA,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCAGA,AGGAAG,AGGAGA,AGGAGG,AGGCGA,AUGGAG,CACCUC,CAGAGA,CCAGAA,CCAGUG,CGAGAA,CUACUG,CUAGAA,GAACCA,GAAGAA,GAAGCG,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUG,GAGGAA,GAGGAG,GAUGGA,GCAGAG,GGAGAG,GGAGAU,GGAGGA,UCCAGA,UCGAGA,UGCAGA,UGGAGG,UUCGAG AAAAGA,AAAGAG,AAAGGA,AACCAG,AACGAG,AAGAAG,AAGAGA,AAGCAG,AAGCGG,AAGCUG,AAGGAG,AAGGCG,AAGUAC,AAUACC,AAUCCC,AAUGCC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACCCGC,ACCCGG,ACCGGU,ACCGUA,ACCUCC,ACCUGC,ACGAGA,ACGAGG,ACGCUG,ACGGAG,ACGUGU,ACUACC,ACUACU,ACUAGA,ACUCAA,ACUCCC,ACUCCU,ACUGUA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGACUA,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCCC,AGCCGA,AGCCUC,AGCGGA,AGCGUG,AGCUCC,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGA,AGGCGU,AGGCUG,AGGGUA,AGUACG,AGUAGA,AGUAGG,AGUAGU,AGUAUC,AGUCGA,AGUGAC,AGUGGU,AGUGUU,AGUUCC,AUACCG,AUCACC,AUCACU,AUCCCC,AUCCCG,AUCCCU,AUCCGG,AUCGAG,AUCGCU,AUGAAU,AUGAUG,AUGCCG,AUGCGU,AUGCUG,AUGGAG,AUUACC,AUUACU,AUUAGU,AUUCCA,AUUCCC,AUUCCU,AUUGAU,CACCUC,CAGAGA,CAGAGG,CAGAGU,CAGCUA,CAGUAG,CAGUCC,CAGUGG,CAGUGU,CCACCA,CCACCG,CCACUA,CCACUG,CCAGAA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCACA,CCCCCA,CCCCCG,CCCCUA,CCCCUG,CCCGCA,CCCGCU,CCCGUG,CCCUUG,CCGAGA,CCGCAG,CCGCUA,CCGGAU,CCGGUG,CCUCAG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGAA,CGAGAG,CGAGAU,CGAGCA,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGG,CGCAGU,CGCCCU,CGCUGC,CGGAGA,CGGAGU,CGUAAG,CGUGAU,CGUGCG,CGUGUA,CGUGUU,CUAACG,CUACCA,CUACCG,CUACUA,CUACUG,CUAGAA,CUAGAC,CUCAAG,CUCCAA,CUCCCA,CUCCCG,CUCCUA,CUCCUG,CUCGAG,CUCGUG,CUGAUG,CUGCAA,CUGCUA,CUGUUA,GAAAGG,GAACCA,GAACGA,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GAAUGC,GACCAC,GACCCC,GACCCG,GACCGG,GACCGU,GACCUG,GACGCU,GACGGA,GACUAC,GACUAG,GACUCA,GACUCC,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGG,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCGU,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUAU,GAGUGA,GAUCAC,GAUCCC,GAUCCG,GAUCGA,GAUCGC,GAUGAU,GAUGCG,GAUGCU,GAUGGA,GAUUAC,GAUUAG,GAUUCC,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCAAA,GCCACC,GCCACU,GCCCAC,GCCCCC,GCCCCU,GCCCUU,GCCGAG,GCCGCA,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGAGC,GCGAGU,GCGCAG,GCGGAG,GCGGUC,GCGUGU,GCUACC,GCUACU,GCUCCA,GCUCCC,GCUCCU,GCUCGA,GCUCGU,GCUGAU,GCUGCA,GCUGCU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGACUG,GGAGAA,GGAGAG,GGAGAU,GGAGCC,GGAGCG,GGAGGA,GGAGUA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAA,GGCCAC,GGCCCA,GGCCCC,GGCCGC,GGCCUC,GGCGAG,GGCGUG,GGCUAC,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUAAG,GGUACG,GGUAGG,GGUAUG,GGUCAC,GGUCAG,GGUCCC,GGUCGC,GGUGAG,GGUGAU,GGUUAA,GGUUAC,GGUUCC,GGUUGG,GGUUGU,GUAACC,GUAAGC,GUAAGU,GUACGA,GUACGC,GUAGGC,GUAGGG,GUAGUC,GUAUCC,GUAUGC,GUCACC,GUCACU,GUCAGU,GUCCCC,GUCCCU,GUCCUC,GUCGAU,GUCGCC,GUCUAA,GUGAGC,GUGAUG,GUGCAG,GUGGUC,GUGUAA,GUUAAU,GUUACC,GUUACG,GUUACU,GUUCCA,GUUCCC,GUUCCG,GUUCCU,GUUCGA,GUUCGU,GUUCUG,GUUGGC,GUUGUU,GUUUCG,UAACCA,UAAGCU,UAAGUA,UACCAG,UACGAG,UACGCU,UACGUG,UAGACU,UAGGCU,UAUCCC,UAUGCC,UAUGCU,UCACCA,UCACCG,UCACUA,UCACUG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCCCA,UCCCCG,UCCCCU,UCCCGC,UCCCGU,UCCCUA,UCCCUG,UCCGGA,UCCUCA,UCCUCC,UCCUGC,UCCUGU,UCGAGA,UCGAGU,UCGCCG,UCGCUG,UCGUAA,UCGUGC,UCUAAC,UCUGUA,UGAAUG,UGAGCU,UGAUCG,UGAUGC,UGAUGG,UGCAGA,UGCAGU,UGCCGC,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUAC,UGUUCC,UGUUCG,UUAAUG,UUACCA,UUACCG,UUACGU,UUACUA,UUACUG,UUAGUG,UUCCAG,UUCCCA,UUCCCG,UUCCCU,UUCCGG,UUCCUA,UUCCUG,UUCGAG,UUCGUG,UUCUGU,UUGAUG,UUGGCG,UUGUUG,UUUCGA
CSTF2 1 1967 0.006134969 0.0028520334 1.105065 UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CELF6 2 2997 0.009202454 0.0043447134 1.082758 GUGUGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
SRSF1 98 99563 0.303680982 0.1442885423 1.073600 AAAAGA,AAAGAA,AAAGAG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGG,ACAGAA,AGAAGA,AGACAA,AGACAG,AGAGAA,AGAGAC,AGAGGA,AGAUGG,AGCGAG,AGGAAA,AGGAAG,AGGAGA,AGGAGG,AGGCGA,AUGGAG,CAACCC,CAGAGA,CCAACC,CCCUGA,CGGAGG,GAAAGA,GAACCA,GAAGAA,GAAGAC,GAAGAG,GACAGA,GAGAAG,GAGACA,GAGGAA,GAGGAG,GAUGCA,GAUGGA,GCGGGA,GCUGGG,GGAAGA,GGAGAU,GGAGGA,GGAGGC,GGGGAG,GGGGGA,UGGAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AACACG,AACAGC,AACCGG,AAGAAC,AAGAAG,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGAG,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACACGA,ACACGU,ACAGAA,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCCGG,ACCCGU,ACCGGA,ACCGGU,ACGAAC,ACGAAG,ACGAAU,ACGACG,ACGCGA,ACGCGC,ACGCUC,ACGGAA,ACGGAC,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGA,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCCGU,AGCGAG,AGCGGA,AGCGGG,AGCGGU,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGCGA,AGGUAA,AGUCGG,AUACGA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,AUUACG,AUUUCA,CAACCA,CAACCC,CAACCG,CAACGA,CAACGC,CAAGCA,CAAGGA,CAAUGG,CACACG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGA,CACCGG,CACGCA,CACGCU,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGCGG,CAGUCG,CAUGGU,CCAACC,CCAACG,CCAAGC,CCAAGG,CCAAUG,CCACAG,CCACCA,CCACCC,CCACCG,CCACGA,CCACGC,CCACGG,CCACUG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCAUGA,CCAUGG,CCCACC,CCCACG,CCCACU,CCCAGC,CCCAGG,CCCAUG,CCCCCA,CCCCCC,CCCCCG,CCCCGA,CCCCGC,CCCCGG,CCCGAC,CCCGCA,CCCGCC,CCCGCG,CCCGGA,CCCGGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCCUGA,CCCUGC,CCCUGG,CCGACA,CCGACC,CCGACG,CCGACU,CCGAGC,CCGAGG,CCGAUG,CCGCCA,CCGCCC,CCGCCG,CCGCGA,CCGCGC,CCGCGG,CCGCUA,CCGGAC,CCGGAG,CCGGCA,CCGGCC,CCGGCG,CCGGGA,CCGGGC,CCGGGG,CCGUCC,CCGUCG,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCA,CCUCCG,CCUCGA,CCUCGG,CCUGAC,CCUGCA,CCUGCG,CCUGGA,CCUGGG,CGAACC,CGAACG,CGAAGC,CGAAGG,CGACAG,CGACCA,CGACCC,CGACCG,CGACGA,CGACGC,CGACGG,CGAGCA,CGAGCG,CGAGGA,CGAGGC,CGAGGG,CGAUGA,CGAUGG,CGCACA,CGCACC,CGCACG,CGCAGC,CGCAGG,CGCCCA,CGCCCC,CGCCCG,CGCCGA,CGCCGC,CGCCGG,CGCCGU,CGCGAG,CGCGCA,CGCGCC,CGCGCG,CGCGCU,CGCGGA,CGCGGC,CGCGGG,CGCGGU,CGCGUC,CGCUAU,CGCUCA,CGCUCC,CGCUCG,CGCUGC,CGCUGG,CGGAAC,CGGAAG,CGGAAU,CGGACA,CGGACC,CGGACG,CGGAGC,CGGAGG,CGGCAC,CGGCAG,CGGCCA,CGGCCC,CGGCCG,CGGCGA,CGGCGC,CGGCGG,CGGGCA,CGGGCC,CGGGCG,CGGGGA,CGGGGC,CGGGGG,CGGUCC,CGGUCG,CGGUGC,CGGUGG,CGUCCA,CGUCCG,CGUCGA,CGUCGG,CGUGCA,CGUGCG,CGUGGA,CGUGGG,CUACGA,CUAGGG,CUCAGG,CUCCGG,CUCGGA,CUCGUG,CUGAAC,CUGACU,CUGAGC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAACCA,GAACGA,GAAGAA,GAAGAC,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACCCG,GACCGA,GACGAA,GACGAC,GACGAG,GACGCA,GACGCG,GACGGA,GACGGC,GACGGG,GACUGA,GACUGG,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGCGA,GAGCGG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUACG,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GAUGGU,GCACCA,GCACCG,GCACGA,GCACGG,GCACGU,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCAUAC,GCCCAC,GCCCCA,GCCCCG,GCCCGA,GCCCGG,GCCCGU,GCCGCA,GCCGCG,GCCGGA,GCCGGG,GCCGGU,GCCGUA,GCGAGC,GCGCAA,GCGCCA,GCGCCC,GCGCCG,GCGCGA,GCGCGC,GCGCGG,GCGGAA,GCGGAC,GCGGAG,GCGGCA,GCGGCG,GCGGGA,GCGGGG,GCGGUU,GCGUCA,GCUCCA,GCUCCG,GCUCGA,GCUCGG,GCUGCA,GCUGCG,GCUGGA,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGACGG,GGACGU,GGACUG,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCC,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAC,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCACG,GGCAGA,GGCCCA,GGCCCG,GGCCGA,GGCCGG,GGCCGU,GGCGCA,GGCGCG,GGCGGA,GGCGGG,GGCGGU,GGGACG,GGGCCA,GGGCCG,GGGCGA,GGGCGG,GGGGAA,GGGGAC,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGGGG,GGGUAC,GGUAAC,GGUCCA,GGUCCG,GGUCGA,GGUCGG,GGUGAA,GGUGAC,GGUGAU,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,GUGACG,UAAUUU,UACGAA,UACGGA,UAGACA,UAGGAC,UAUUAC,UCAAGA,UCAGGU,UCCGGA,UCGCAC,UCGGGC,UCGUGU,UGAACA,UGAACC,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUA,UGACUG,UGAGUU,UGAUGA,UGAUGC,UGAUGG,UGGAAA,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGA,UGGUGC,UGGUGG,UGUAGG,UUAAUU,UUACGG,UUCAAG,UUGACA,UUUCAA
RBM4 2 3065 0.009202454 0.0044432593 1.050400 CCUCUU,CUCUUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF2 1 479 0.09090909 0.0314383 1.531901 AGAUCC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
PABPN1 3 178 0.009523810 0.0009018541 3.400573 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
MATR3 3 216 0.009523810 0.0010933091 3.122837 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC4 4 462 0.011904762 0.0023327287 2.351448 AAAAAA,AAAAAG AAAAAA,AAAAAG
RBM6 1 191 0.004761905 0.0009673519 2.299426 AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 2 325 0.007142857 0.0016424829 2.120623 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 AAUUAA,GAAUUA,GAUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
IGHMBP2 2 350 0.007142857 0.0017684401 2.014024 AAAAAA AAAAAA
ZFP36L2 5 774 0.014285714 0.0039046755 1.871299 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
SART3 5 777 0.014285714 0.0039197904 1.865725 AAAAAA,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
U2AF2 7 1071 0.019047619 0.0054010480 1.818299 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
AGO2 4 677 0.011904762 0.0034159613 1.801175 AAAAAA,AAGUGC,AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AAGAAG,AGAAGA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
TRA2B 8 1447 0.021428571 0.0072954454 1.554468 AAAGAA,AAGAAC,AAGAAG,AGAAGA,AGGAAA,GAAAGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,GUUGUU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM41 2 502 0.007142857 0.0025342604 1.494937 UACUUU,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
PTBP1 44 8003 0.107142857 0.0403264813 1.409736 ACUUUU,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCUUUC,CCUUUU,CUCCAU,CUUCCU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,UACUUU,UAUUUU,UCCAUC,UCUUUC,UCUUUU,UUAUUU,UUCCUU,UUCUUC,UUCUUU,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
PUM1 11 2172 0.028571429 0.0109482064 1.383879 AAUAUU,AGAAUU,CAGAAU,CCAGAA,UAAUAU,UAAUGU,UACAUA,UGUAAU,UUAAUG,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 AAAAAA,AUCUAA,AUUUAU,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUUAUU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAAAAA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,AGAAAA,CUAAUA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
TRA2A 5 1133 0.014285714 0.0057134220 1.322146 AAAGAA,AAGAAG,AGAAGA,GAAAGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,UGUGUU,UGUUGU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 GUUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TIA1 22 5140 0.054761905 0.0259018541 1.080117 AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUUUUC,CUUUUU,UAUUUU,UCCUUU,UUAUUU,UUCUCC,UUUAUU,UUUUCU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AGAAGA,GAGGAA,UACAGC,UACAUA,UGCGUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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