ENSG00000176715:+:16:89098590:89133262

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000176715:+:16:89098590:89133262 ENSG00000176715 MSTRG.13252.9 + 16 89098591 89133262 1559 GUGUCCCACCGGCCUUCCGGGUUCCAGCGCCAGGCCUGGUGCCUGCCCCAGGAGGAUGAGCAUUUGCAUUGCCUGCACCUUAUCGUGCCCUUCCACCUGCUGAAGCAGCUGUGCCUGCCGCUCUUGUGAACUGCGAACUUCCCCUUACCUCCUCUCUCUGGCUCGGGAGCUGGCUCGGCCGCCUGUCAGUGCAAUGCUGCCCCAUGUGGUGCUCACCUUCCGGCGCCUGGGCUGCGCCUUGGCGUCCUGCCGGCUGGCGCCUGCGAGACACAGAGGAAGUGGUCUUCUGCACACAGCCCCAGUGGCCCGCUCGGACAGGAGCGCCCCGGUGUUCACCCGUGCCCUGGCCUUUGGGGACAGAAUCGCCCUGGUUGACCAGCACGGCCGCCACACGUACAGGGAGCUUUAUUCCCGCAGCCUUCGCCUGUCCCAGGAGAUCUGCAGGCUCUGCGGGUGUGUCGGCGGGGACCUCCGGGAGGAGAGGGUCUCCUUCCUAUGCGCUAACGAUGCCUCCUACGUCGUGGCCCAGUGGGCGUCAUGGAUGAGUGGCGGUGUGGCAGUCCCCCUCUACAGGAAGCAUCCCGCGGCCCAGCUGGAGUAUGUCAUCUGCGACUCCCAGAGCUCUGUGGUCCUUGCCAGCCAGGAGUACCUGGAGCUCCUGAGCCCGGUGGUCAGGAAGCUGGGGGUCCCGCUGCUGCCGCUCACACCAGCCAUCUACACUGGAGCAGUAGAGGAACCGGCAGAGGUCCCGGUCCCAGAGCAGGGAUGGAGGAACAAGGGCGCCAUGAUCAUCUACACCAGUGGGACCACGGGGAGGCCCAAGGGCGUGCUGAGCACGCACCAAAACAUCAGGGCUGUGGUGACCGGGCUGGUCCACAAGUGGGCAUGGACCAAAGACGACGUGAUCCUCCACGUGCUCCCGCUGCACCACGUCCAUGGUGUGGUCAACGCGCUGCUCUGUCCUCUCUGGGUGGGAGCCACCUGUGUGAUGAUGCCUGAGUUCAGCCCUCAGCAGGUUUGGGAAAAGUUCUUAAGUUCUGAAACGCCGCGGAUCAAUGUCUUUAUGGCAGUGCCUACAAUAUACACCAAGCUGAUGGAGUACUACGACAGGCAUUUUACCCAGCCGCACGCCCAGGAUUUCUUGCGUGCAGUUUGUGAAGAAAAAAUUAGGCUGAUGGUCUCAGGCUCAGCUGCCCUGCCCCUCCCAGUGCUGGAGAAGUGGAAGAACAUCACGGGCCACACCCUGCUGGAGCGGUAUGGCAUGACCGAGAUCGGCAUGGCUCUGUCCGGGCCCCUGACCACUGCCGUGCGCCUGCCAGGUUCCGUGGGGACCCCACUGCCUGGAGUACAGGUGCGCAUUGUCUCAGAAAACCCACAGAGGGAAGCCUGCUCCUACACCAUCCACGCAGAGGGAGACGAGAGGGGGACCAAGGUGACCCCAGGGUUUGAAGAAAAGGAGGGGGAGCUGCUGGUGAGGGGACCCUCCGUGUUUCGAGAAUACUGGAAUAAACCAGAAGAAACUAAGAGUGCAUUCACCCUGGAUGGCUGGUUUAAGACAGGUGUCCCACCGGCCUUCCGGGUUCCAGCGCCAGGCCUGGUGCCUGCCCCA circ
ENSG00000176715:+:16:89098590:89133262 ENSG00000176715 MSTRG.13252.9 + 16 89098591 89133262 22 GUUUAAGACAGGUGUCCCACCG bsj
ENSG00000176715:+:16:89098590:89133262 ENSG00000176715 MSTRG.13252.9 + 16 89098391 89098600 210 GUGUGUGGGAGGAGACUCGACAGGGUCAUGGGGUCACUGCUGCCCGUUGUCGGGAGAUAAGGCUCACAGCUUUAUUUGAUAAUGUUGUCUUUAGCUUGUAAAUGAACAUGCUUCCCUUCCCCCAUUGAGUGUUGAGUGUUGUGCCUGUGGGAAGCGUUAUACACACAGCCUGGGACCUCAGCACAGAUGCCCGUUGACAGGUGUCCCACC ie_up
ENSG00000176715:+:16:89098590:89133262 ENSG00000176715 MSTRG.13252.9 + 16 89133253 89133462 210 UUUAAGACAGGUAGGACCCAGCCCCAUGGGAGUGGAGGAGACCCCGAGGGGACAGGCAGGAACUCAUUGCUGCCCACGUUGAGUGACACCGAGGCUGGGAGUUCCCAGAAUUUUCAGCCAAAGGCAGAAGAUGGGGUGGAGUGGGGCUGGGGGCCACUGUUACGGCACUGCCUCCUGAGCACCCGGCCUCCCCACCGGCUUCUAGAGUGG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 3 267 0.002565747 0.0003883867 2.723814 CUCUCU CUCUCU
RBM8A 8 611 0.005772931 0.0008869128 2.702440 ACGCGC,AUGCGC,CGCGCU,GUGCGC,UGCGCC,UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
ESRP1 1 156 0.001282874 0.0002275250 2.495282 AGGGAU AGGGAU
RBM42 3 407 0.002565747 0.0005912752 2.117477 AACUAA,ACUAAG,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
SRP14 7 847 0.005131495 0.0012289250 2.061982 CGCCUG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
IFIH1 7 904 0.005131495 0.0013115296 1.968129 CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCGC CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
ANKHD1 2 339 0.001924310 0.0004927293 1.965474 AGACGA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
PPRC1 5 780 0.003848621 0.0011318283 1.765686 CGGCGC,GGCGCC,GGGCGC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
FXR1 2 411 0.001924310 0.0005970720 1.688365 ACGACA,ACGACG ACGACA,ACGACG,AUGACA,AUGACG
NONO 9 1498 0.006414368 0.0021723567 1.562046 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
CNOT4 1 314 0.001282874 0.0004564992 1.490695 GACAGA GACAGA
ZC3H10 5 1053 0.003848621 0.0015274610 1.333206 CAGCGC,CCAGCG,GAGCGC,GGAGCG CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
NELFE 16 3028 0.010904426 0.0043896388 1.312740 CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGUCUC,UCUCUC,UCUCUG,UCUGGC CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
CELF4 9 1782 0.006414368 0.0025839306 1.311740 GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ACO1 6 1283 0.004490058 0.0018607779 1.270828 CAGUGC,CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF6 13 2997 0.008980115 0.0043447134 1.047473 GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,UGUGAU,UGUGGU,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
YTHDC1 25 5576 0.016677357 0.0080822104 1.045069 GAAUAC,GAGUAC,GAGUGC,GCCUAC,GCCUGC,GCGUGC,GGCUGC,UACUAC,UCCUAC,UCCUGC,UCGUGC,UGAUGC,UGCUGC,UGGUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
HNRNPLL 15 3534 0.010262989 0.0051229360 1.002408 ACACCA,ACGACA,AGACGA,CACACA,CACACC,CACCAC,CACUGC,GACGAC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
FXR2 1 29 0.09090909 0.001964894 5.531901 GACAGG AGACAA,AGACAG,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGGA,GGACAA,GGACAG,GGACGA,UGACAA,UGACAG,UGACGA
FMR1 1 117 0.09090909 0.007728583 3.556149 GACAGG AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
SRSF1 2 625 0.13636364 0.041000786 1.733736 ACAGGU,GACAGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGF2BP1 5 173 0.014285714 0.0008766626 4.026408 AGCACC,CACCCG,CCCGUU,GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBM24 13 888 0.033333333 0.0044790407 2.895704 AGAGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGG,GUGUGU,UGAGUG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
FXR2 7 730 0.019047619 0.0036829907 2.370661 AGACAG,GACAGG,GGACAG,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF5 5 669 0.014285714 0.0033756550 2.081334 GUGUGG,GUGUGU,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
LIN28A 7 900 0.019047619 0.0045395002 2.069005 AGGAGA,GGAGAU,GGAGGA,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
CELF4 5 776 0.014285714 0.0039147521 1.867580 GUGUGG,GUGUGU,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF1 7 1097 0.019047619 0.0055320435 1.783726 GUGUGU,GUGUUG,GUUGUG,UGUGUG,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
AGO1 1 283 0.004761905 0.0014308746 1.734641 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
CELF6 7 1196 0.019047619 0.0060308343 1.659181 GUGGGG,GUGUGG,GUGUUG,UGUGGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPLL 4 748 0.011904762 0.0037736800 1.657495 ACACAC,CACACA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AAGACA,AGACAG,GGACAG,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
ZNF638 3 646 0.009523810 0.0032597743 1.546767 CGUUGU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPF 19 3360 0.047619048 0.0169336961 1.491642 AGGGGA,AUGGGA,AUGGGG,CUGGGG,GAGGGG,GAUGGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAGACA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
CELF2 4 881 0.011904762 0.0044437727 1.421682 GUGUGU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
SF1 6 1294 0.016666667 0.0065245869 1.353007 CACAGA,CACCGA,GCUGCC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
HNRNPH2 16 3198 0.040476190 0.0161174929 1.328446 AGGGGA,CGAGGG,CUGGGG,GAGGGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH3 12 2496 0.030952381 0.0125806127 1.298848 AGGGGA,CGAGGG,GAGGGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGUGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
HNRNPH1 16 3406 0.040476190 0.0171654575 1.237565 AGGGGA,CGAGGG,CUGGGG,GAGGGG,GGAGGA,GGGAAG,GGGAGG,GGGCUG,GGGGCU,GGGGGC,UGGGGG,UGGGGU,UGUGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
G3BP1 16 3431 0.040476190 0.0172914148 1.227018 ACAGGC,ACCGGC,AGGCAG,CACCCG,CACCGG,CAGGCA,CCACCG,CCCACC,CCCACG,CCCCAC,CCCCCA,CCCGGC,CCGGCC,CGGCAC ACACGC,ACAGGC,ACCCAC,ACCCAU,ACCCCC,ACCCCU,ACCCGC,ACCGGC,ACGCAC,ACGCAG,ACGCCC,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUACGC,AUAGGC,AUCCGC,AUCGGC,CACACG,CACAGG,CACCCG,CACCGG,CACGCA,CACGCC,CAGGCA,CAGGCC,CAUACG,CAUAGG,CAUCCG,CAUCGG,CCACAC,CCACAG,CCACCC,CCACCG,CCACGC,CCAGGC,CCAUAC,CCAUAG,CCAUCC,CCAUCG,CCCACA,CCCACC,CCCACG,CCCAGG,CCCAUA,CCCAUC,CCCCAC,CCCCAG,CCCCCA,CCCCCC,CCCCCG,CCCCGC,CCCCGG,CCCCUA,CCCCUC,CCCGCA,CCCGCC,CCCGGC,CCCUAC,CCCUAG,CCCUCC,CCCUCG,CCGCAC,CCGCAG,CCGCCC,CCGCCG,CCGGCA,CCGGCC,CCUACG,CCUAGG,CCUCCG,CCUCGG,CGGCAC,CGGCAG,CGGCCC,CGGCCG,CUACGC,CUAGGC,CUCCGC,CUCGGC,UACGCA,UACGCC,UAGGCA,UAGGCC,UCCGCA,UCCGCC,UCGGCA,UCGGCC
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUGU,GUGUUG,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,GUUGUG,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CCCUUC,UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUGUU,AGAAUU,AGAUAA,CAGAAU,CCAGAA,CUUGUA,GUAAAU,UAAUGU,UGUAAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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