ENSG00000156931:+:3:184964467:184999861

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000156931:+:3:184964467:184999861 ENSG00000156931 ENST00000287546 + 3 184964468 184999861 819 AUUACUCAGAAGUAUCAACUUCAUGAAGUCACCGCUUAUCUAUUGGAAAAGAAAGGAGAUAUUCAUGGUGCCUUCCUAAUAAUGUUAGAGAGACUACAAAGCAAACUUCAAGAGGUAACACAUCAAGGUGAAAAUACCAAAGAGGAUCCCUCAUUGAAGGAUGUUGAAGAUACUAUGGUGGAGACCAUUGCUCUUUGCCAGAGAAAUUCACAUAAUUUGAACCAGCAGCAACGUGAGGCACUUUGGUUUCCGUUAUUGGAGGCAAUGAUGGCCCCUCAGAAGCUGUCCAGUUCAGCCAUUCCUCAUCUACACUCUGAAGCUCUGAAGUCUUUGACCAUGCAAGUUUUAAAUAGCAUGGCAGCAUUUAUUGCCCUUCCAUCAAUCUUGCAAAGAAUCUUACAGGAUCCAGUUUAUGGAAAAGGAAAACUUGGAGAAAUCCAGGGACUUAUCUUGGGAAUGUUAGAUACCUUUAACUAUGAACAAACCCUGCUGGAAACAACAACCAGCCUUCUAAACCAAGAUCUCCAUUGGUCAUUGUGUAACCUGAGAGCUUCGGUCACCAGAGGACUGAAUCCCAAACAAGAUUACUGCUCUAUAUGUUUGCAGCAGUACAAGAGACGCCAAGAAAUGGCUGAUGAAAUAAUUGUCUUUAGCUGUGGCCAUUUGUAUCACUCAUUCUGCCUACAAAACAAAGAAUGCACUGUGGAAUUUGAGGGCCAAACAAGAUGGACAUGCUACAAAUGCAGUUCAAGUAACAAAGUAGGAAAACUCAGUGAAAAUUCAUCUGAAAUUAAAAAGGGAAGGAUAACCCCAUCACAGAUUACUCAGAAGUAUCAACUUCAUGAAGUCACCGCUUAUCUAUUGGAAAA circ
ENSG00000156931:+:3:184964467:184999861 ENSG00000156931 ENST00000287546 + 3 184964468 184999861 22 CCCCAUCACAGAUUACUCAGAA bsj
ENSG00000156931:+:3:184964467:184999861 ENSG00000156931 ENST00000287546 + 3 184964268 184964477 210 UGAAUUUGGUCCAGUUAGAACUCCCAAAUGAUCUACUAUAUGACUAGAAAGUCAGCUAUUUGCAUAUUGUACUGUAAAAUAUCAUACUAAUAAGGUAUAAAUUCAUUAUUUAUCAUAUGAGUUUUUUCAUCCUCAAUGGGAUCUUCCCACUCCACAAAUAAGAUUGGUGAAUAAAAAUAUUUAUCUUUUUUAUUUCCUAGAUUACUCAGA ie_up
ENSG00000156931:+:3:184964467:184999861 ENSG00000156931 ENST00000287546 + 3 184999852 185000061 210 CCCAUCACAGGUAAGACUUGUUUUCGUGGCAAAAUGGAAAUGGUCUUUUCUUACCAAUGUCAUUUGGGCCUGGUCUCAUUUCCUUCGGUUCCAUAGGUCUCAACAAAUUUACCUGGUGGGUAUUGGGUACAUGAAAUGUUCUUUUCAGUCCUAUUUAGUGUUCGAAGAGCCUCUCCUCUCUACUCAGUAUGGAAAAACAUGAAUUUGAGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 3 489 0.004884005 0.0007101099 2.781950 ACAAGA ACAAGA,CAAGAC
MATR3 5 739 0.007326007 0.0010724109 2.772169 AAUCUU,AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
TUT1 4 678 0.006105006 0.0009840095 2.633249 AAAUAC,AGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
NXF1 1 286 0.002442002 0.0004159215 2.553681 AACCUG AACCUG
HNRNPA0 2 453 0.003663004 0.0006579386 2.477002 AGAUAU,AGUAGG AAUUUA,AGAUAU,AGUAGG
HNRNPAB 7 1782 0.009768010 0.0025839306 1.918497 ACAAAG,AUAGCA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
SNRNP70 4 1237 0.006105006 0.0017941145 1.766721 AUCAAG,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SNRPB2 3 991 0.004884005 0.0014376103 1.764392 UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPM 3 999 0.004884005 0.0014492040 1.752804 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
RBM6 3 1054 0.004884005 0.0015289102 1.675561 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
PABPC5 8 2400 0.010989011 0.0034795387 1.659094 AGAAAG,AGAAAU,GAAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM3 7 2152 0.009768010 0.0031201361 1.646456 AAAACU,AGACUA,AUACUA,GAGACG,GAGACU,GAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
AGO1 1 548 0.002442002 0.0007956130 1.617926 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
YBX2 4 1480 0.006105006 0.0021462711 1.508160 AACAAC,ACAACA,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC3 3 1234 0.004884005 0.0017897669 1.448293 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
IGF2BP3 14 4815 0.018315018 0.0069793662 1.391859 AAAACA,AAACUC,AAAUAC,AAAUUC,AACACA,AACUCA,AAUUCA,ACAAAC,ACACUC,CAAACA,CACUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
IGF2BP2 22 8408 0.028083028 0.0121863560 1.204432 AAAACA,AAACUC,AAAUAC,AAAUUC,AACACA,AACUCA,AAUUCA,ACAAAC,ACACUC,CAAAAC,CAAACA,CACUCA,CCAAAC,CCAUUC,GAAAAC,GAAAUC,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
EIF4B 2 1179 0.003663004 0.0017100607 1.098980 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
SRSF10 34 13860 0.042735043 0.0200874160 1.089128 AAAAGA,AAAGAA,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,ACAAAG,AGAGAA,AGAGAC,AGAGAG,AGAGGA,CAAAGA,GAGAAA,GAGACC,GAGACG,GAGAGA,GAGAGC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBMX 11 4925 0.014652015 0.0071387787 1.037350 AAGGAA,AAGUAA,ACCAAA,AGUAAC,AUCCCA,GAAGGA,GGAAGG,GUAACA,UAACAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 3 1642 0.004884005 0.0023810421 1.036472 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
G3BP2 3 1644 0.004884005 0.0023839405 1.034716 AGGAUA,AGGAUG,GGAUAA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RBM28 1 822 0.002442002 0.0011926949 1.033840 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SF1 1 24 0.09090909 0.001637412 5.794936 CACAGA ACAGAC,ACAGUC,AGUAAG,AUACUA,CACAGA,CACUGA,CAGUCA,GCUGAC,GCUGCC,UACUGA,UGCUAA,UGCUGA,UGCUGC
SRSF5 1 44 0.09090909 0.002947341 4.946939 CACAGA AACAGC,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUC,CACGGA,CGCAGC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACGUA,UGCAGA,UGCAGC,UGCGGC
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 AGAUUA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA
SRSF2 1 479 0.09090909 0.031438302 1.531901 GAUUAC AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 1 625 0.09090909 0.041000786 1.148773 CACAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PTBP2 1 146 0.004761905 0.0007406288 2.684716 CUCUCU CUCUCU
QKI 10 904 0.026190476 0.0045596534 2.522046 ACUAAU,AUCAUA,AUCUAC,CUACUC,UACUCA,UCAUAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ZFP36L2 8 774 0.021428571 0.0039046755 2.456261 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 2 310 0.007142857 0.0015669085 2.188580 AAAAAC,AAAACA AAAAAC,AAAACA,AAAACC,GAAAAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAUUUA,AUUUAU,UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,UGUUCG,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
PABPC1 7 1321 0.019047619 0.0066606207 1.515882 AAAAAC,ACAAAU,ACUAAU,CAAAUA,CUAAUA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAGACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBM46 5 1091 0.014285714 0.0055018138 1.376594 AAUGAU,AUCAUA,AUGAAA,AUGAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAG,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 CAGUAU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ELAVL1 14 3309 0.035714286 0.0166767432 1.098664 AUUUAU,UAUUUA,UGUUUU,UUAUUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL4 12 2916 0.030952381 0.0146966949 1.074559 AUUUAU,UAUUUA,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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