ENSG00000198722:+:9:35228014:35259050

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198722:+:9:35228014:35259050 ENSG00000198722 ENST00000635942 + 9 35228015 35259050 504 UUAAAAGGGCCAAAUUCCAGGGUUCACCAGAUAAAUUUAACACAUAUGUGACCCUGAAAGUACAGAAUGUGAAGAGCACAACUGUAGCAGUUCGUGGUGAUCAGCCUUCCUGGGAACAGGAUUUCAUGUUUGAGAUUAGUCGCCUGGACCUGGGUCUAAGUGUGGAGGUAUGGAACAAAGGACUGAUCUGGGACACCAUGGUGGGGACUGUGUGGAUUGCGCUGAAGACUAUUCGUCAGUCGGAUGAGGAAGGGCCUGGGGAAUGGUCCACAUUAGAGGCAGAGACGUUAAUGAAAGACGAUGAGAUCUGUGGAACUAGAAACCCAACUCCUCAUAAAAUUUUGCUUGAUACAAGAUUUGAGUUGCCUUUUGAUAUCCCAGAGGAGGAAGCCAGAUAUUGGACCUACAAAUGGGAGCAAAUCAAUGCCUUGGGAGCUGACAAUGAGUAUUCUAGUCAAGAAGAAAGCCAGAGGAAGCCAUUGCCCACUGCUGCCGCCCAGUGUUUUAAAAGGGCCAAAUUCCAGGGUUCACCAGAUAAAUUUAACACAUAUGUG circ
ENSG00000198722:+:9:35228014:35259050 ENSG00000198722 ENST00000635942 + 9 35228015 35259050 22 CGCCCAGUGUUUUAAAAGGGCC bsj
ENSG00000198722:+:9:35228014:35259050 ENSG00000198722 ENST00000635942 + 9 35227815 35228024 210 UGAGAUCAGAUUGACUUUUAAGGUCUCGUCUGACUCUUUGCCUUUCAAGUUUUGAUCAGAAGUCUCAGCUUUUUUUCUCCAGGUUUAGAUUUAACAAUCUAAACCUAGUUCUAACAUUGGUAUGUAGUGCCUAAUAAAUGUUGCUUAAGUAAAAUGAACUUGGAAACAUUCUUCAUGGUAUCCUCUUUUUUCUCUUGCAGUUAAAAGGGC ie_up
ENSG00000198722:+:9:35228014:35259050 ENSG00000198722 ENST00000635942 + 9 35259041 35259250 210 GCCCAGUGUUGUAAGUGAGAAACUUGUCUAUGAAUCUCUUUUAAUUGUAGCUUUCUGUCGCUUCUCUGAACAUGGGUUAUUCUGAGCUGGGGAGGGUGGAGAUGUCAUGUGUGUAAGCAGAAGAUAUUCCUGAAGCACAUCUGUUCAGGCGCCUUUCUCUGAUGGCUGUCUAUCUAUUAGCUUUAGGGAGACGUUUUUCGGUUUUGUAUG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 4 339 0.009920635 0.0004927293 4.331565 AGACGA,AGACGU,GACGAU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SUPV3L1 1 199 0.003968254 0.0002898408 3.775172 CCGCCC CCGCCC
HNRNPA0 2 453 0.005952381 0.0006579386 3.177442 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMY1A1 1 489 0.003968254 0.0007101099 2.482390 ACAAGA ACAAGA,CAAGAC
NONO 5 1498 0.011904762 0.0021723567 2.454206 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
AGO1 1 548 0.003968254 0.0007956130 2.318366 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
SRP14 2 847 0.005952381 0.0012289250 2.276070 CGCCUG,CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF5 4 1415 0.009920635 0.0020520728 2.273351 GUGUGG,GUGUUU,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM8A 1 611 0.003968254 0.0008869128 2.161640 UGCGCU ACGCGC,AUGCGC,CGCGCC,CGCGCG,CGCGCU,GCGCGC,GUGCGC,UGCGCC,UGCGCG,UGCGCU
SRSF11 1 688 0.003968254 0.0009985015 1.990668 AAGAAG AAGAAG
CELF4 4 1782 0.009920635 0.0025839306 1.940865 GUGUGG,GUGUUU,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ESRP2 5 2150 0.011904762 0.0031172377 1.933199 GGGAAU,GGGGAA,UGGGAA,UGGGGA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM3 5 2152 0.011904762 0.0031201361 1.931858 AAGACG,AAGACU,AGACGA,AGACUA,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
SRSF4 9 3740 0.019841270 0.0054214720 1.871748 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
EIF4B 2 1179 0.005952381 0.0017100607 1.799419 GUCGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CSTF2 4 1967 0.009920635 0.0028520334 1.798442 GUGUUU,UGUGUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
G3BP2 3 1644 0.007936508 0.0023839405 1.735156 AGGAUU,GGAUGA,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
TRA2A 15 6871 0.031746032 0.0099589296 1.672514 AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
KHDRBS2 3 1858 0.007936508 0.0026940701 1.558717 AUAAAA,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM24 4 2357 0.009920635 0.0034172229 1.537608 AGUGUG,GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF6 5 2997 0.011904762 0.0043447134 1.454206 GUGGGG,GUGGUG,GUGUGG,UGUGUG GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
TARDBP 4 2654 0.009920635 0.0038476365 1.366460 GAAUGG,GAAUGU,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBMX 8 4925 0.017857143 0.0071387787 1.322752 AAGAAG,AAGUGU,AGGAAG,AGUGUU,AUCCCA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 2 1642 0.005952381 0.0023810421 1.321874 GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
MSI1 4 2770 0.009920635 0.0040157442 1.304765 AGGAAG,AGGAGG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPF 17 10561 0.035714286 0.0153064921 1.222358 AAUGUG,AGGAAG,AUGGGA,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGAAU,GGGGAA,UGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPAB 2 1782 0.005952381 0.0025839306 1.203900 AAAGAC,ACAAAG AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 1222 0.003968254 0.0017723764 1.162819 AGAAGA AAAAGA,AGAAGA
SNRNP70 1 1237 0.003968254 0.0017941145 1.145232 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CELF2 2 1886 0.005952381 0.0027346479 1.122112 UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
SRSF7 22 14481 0.045634921 0.0209873716 1.120617 AAAGGA,AAGAAG,AAGGAC,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAC,AGAGGA,AGAUCU,AGGAAG,CAGAGA,GAAGAA,GACGAU,GAGAUC,GAGGAA,GGAAGG AAAGGA,AAGAAG,AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACGACG,ACGAGA,ACGAUA,ACGAUU,ACUACG,ACUAGA,AGAAGA,AGACGA,AGACUA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AGGCGA,AUAGAA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CCGAGA,CGAAUG,CGACGA,CGAGAC,CGAGAG,CGAGAU,CGAUAG,CGAUUG,CUACGA,CUAGAG,CUCUUC,CUGAGA,CUUCAC,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GACGAG,GACGAU,GACUAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UACGAC,UACGAU,UAGAGA,UCAACA,UCGAGA,UCGAUU,UCUCCG,UCUUCA,UGAGAG,UGGACA
SSB 1 1260 0.003968254 0.0018274462 1.118675 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
ACO1 1 1283 0.003968254 0.0018607779 1.092599 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPH1 15 10717 0.031746032 0.0155325680 1.031280 AAUGUG,AGGAAG,CUGGGG,GAAGGG,GAAUGU,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGAAU,GGGGAA AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CELF5 1 2 0.09090909 0.0001964894 8.853829 GUGUUU GUGUUG,UGUGUG
CSTF2 2 4 0.13636364 0.0003274823 8.701826 GUGUUU,UGUUUU GUGUUG,GUUUUG,UGUGUG,UGUUUG
CELF4 1 4 0.09090909 0.0003274823 8.116864 GUGUUU GGUGUG,GUGUUG,UGUGUG
SSB 1 5 0.09090909 0.0003929788 7.853829 UGUUUU CUGUUU,GCUGUU,UGCUGU
TIA1 1 9 0.09090909 0.0006549646 7.116864 GUUUUA AUUUUG,GUUUUG,GUUUUU,UAUUUU,UUCUCC,UUUUGG,UUUUGU
ELAVL1 1 10 0.09090909 0.0007204611 6.979360 UGUUUU UAUUUU,UGGUUU,UUAGUU,UUGGUU,UUUAGU,UUUGGU,UUUGUU
TIAL1 2 26 0.13636364 0.0017684045 6.268867 UUUAAA,UUUUAA AAAUUU,AAUUUU,AGUUUU,AUUUUG,CAGUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUCAG
ELAVL2 2 28 0.13636364 0.0018993974 6.165773 GUUUUA,UUUUAA AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG
PPIE 2 61 0.13636364 0.0040607807 5.069558 UUUAAA,UUUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAA,UAAAAA,UAAAUA,UAAAUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAUUA
ZFP36 1 126 0.09090909 0.0083180508 3.450107 UUUAAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 2 56 0.007142857 0.0002871826 4.636461 AGACGU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
PPRC1 1 127 0.004761905 0.0006449012 2.884389 GGCGCC CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC
EIF4B 2 226 0.007142857 0.0011436921 2.642803 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
A1CF 5 598 0.014285714 0.0030179363 2.242939 GAUCAG,UAAUUG,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 AUUUAA,GAUUUA,GCUUAA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF2 5 881 0.014285714 0.0044437727 1.684716 AUGUGU,GUAUGU,GUGUGU,UGUGUG,UGUUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
CELF5 3 669 0.009523810 0.0033756550 1.496371 GUGUGU,GUGUUG,UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CSTF2 5 1022 0.014285714 0.0051541717 1.470761 GUGUGU,GUGUUG,GUUUUG,UGUGUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 GAAACU,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CELF1 5 1097 0.014285714 0.0055320435 1.368689 CUGUCU,GUGUGU,GUGUUG,UGUGUG,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF4 3 776 0.009523810 0.0039147521 1.282618 GUGUGU,GUGUUG,UGUGUG GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUGUGU,GUUUUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 AAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUCUU,CUCUUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
HNRNPC 8 2006 0.021428571 0.0101118501 1.083489 CUUUUU,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
LIN28A 3 900 0.009523810 0.0045395002 1.069005 GGAGAU,GGAGGG,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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