ENSG00000182831:+:16:9102983:9103259

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000182831:+:16:9102983:9103259 ENSG00000182831 ENST00000327827 + 16 9102984 9103259 276 AAAGCGUGGAUACCCAUCAACGAAGUUUUGAUAUUGGAAUUCAGAUUGGCUAUCAGCGACGCAAUAAGGAUGUGUUGGCUUGGGUUAAAAAACGCAGAAGAACUAUUCGUCGAGAAGAUUUGAUCAGCUUCCUGUGUGGAAAAGUUCCUCCACCACGAAACUCUAGAGCUCCCCCAAGACUGACUGUAGUGUCCCCUAACCGAGCUACUUCAACGGAAACUAGCUCAUCUGUAGAGACUGAUUUGCAACCCUUCCGGGAAGCCAUAGCUCUGCAUGAAAGCGUGGAUACCCAUCAACGAAGUUUUGAUAUUGGAAUUCAGAUUGGC circ
ENSG00000182831:+:16:9102983:9103259 ENSG00000182831 ENST00000327827 + 16 9102984 9103259 22 AGCUCUGCAUGAAAGCGUGGAU bsj
ENSG00000182831:+:16:9102983:9103259 ENSG00000182831 ENST00000327827 + 16 9102784 9102993 210 ACUGAAUUUAGACCAUUAAGAUUAAAUGUUACAUAUAACAUUUUCAUUAUGACUGAAAUCAUUUCAGUUUAUAUUACUGAUGGGCUCAGAGGCCACAUCAUGGUAUUCACUUUGGUUAAAUUGUAAAAUGGUUUUCUUUAGAAGGGAAUACGGGCUCUAAUGGUCAUGAUACAUGUUUUCUUUUUCUUUUUUUCUAACAGAAAGCGUGGA ie_up
ENSG00000182831:+:16:9102983:9103259 ENSG00000182831 ENST00000327827 + 16 9103250 9103459 210 GCUCUGCAUGGUAAAGCCGUUUAAACAUAUUUCUUUGGAAAAAUGGUUAAGAGGGUGCCUGUGGACCCAUUUUUCACGGUUAGGUUUAGGUCCAGAUAUACUGUUUUUUGUCUUACAGUAAACAGCUUGCUCUAGAAAUGUUUAAUAGAAUGUAAGCUAAGAACUUAAUAUGGGCGAUUUCUGUCAGCUAACCUAUCCUAGAAAAUGUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 2 452 0.010869565 0.0006564894 4.049379 UGACUG,UGCAUG UGACUG,UGCAUG
RBMY1A1 1 489 0.007246377 0.0007101099 3.351146 CAAGAC ACAAGA,CAAGAC
RBFOX1 3 1077 0.014492754 0.0015622419 3.213642 GCAUGA,UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
RBM28 2 822 0.010869565 0.0011926949 3.187997 UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
SRP14 2 847 0.010869565 0.0012289250 3.144826 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
CELF5 4 1415 0.018115942 0.0020520728 3.142106 GUGUGG,GUGUUG,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
RBM3 6 2152 0.025362319 0.0031201361 3.023006 AAAACG,AAACUA,AAGACU,GAAACU,GAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ERI1 1 632 0.007246377 0.0009173461 2.981722 UUCAGA UUCAGA,UUUCAG
CELF4 4 1782 0.018115942 0.0025839306 2.809621 GUGUGG,GUGUUG,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CSTF2 4 1967 0.018115942 0.0028520334 2.667197 GUGUUG,GUUUUG,UGUGUG,UGUGUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
IGHMBP2 1 813 0.007246377 0.0011796520 2.618898 AAAAAA AAAAAA
PABPN1 2 1222 0.010869565 0.0017723764 2.616537 AGAAGA AAAAGA,AGAAGA
ZC3H10 1 1053 0.007246377 0.0015274610 2.246124 CAGCGA CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG
A1CF 2 1642 0.010869565 0.0023810421 2.190629 GAUCAG,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
EIF4B 1 1179 0.007246377 0.0017100607 2.083212 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
CELF1 3 2391 0.014492754 0.0034664959 2.063782 GUGUUG,UGUGUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF6 4 2997 0.018115942 0.0043447134 2.059927 GUGUGG,GUGUUG,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
PABPC3 1 1234 0.007246377 0.0017897669 2.017488 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 1 1251 0.007246377 0.0018144033 1.997765 AAAAAA AAAAAA,AAAAAG
CELF2 2 1886 0.010869565 0.0027346479 1.990867 AUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBM24 2 2357 0.010869565 0.0034172229 1.669398 GUGUGG,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
SYNCRIP 1 1634 0.007246377 0.0023694485 1.612709 AAAAAA AAAAAA,UUUUUU
G3BP2 1 1644 0.007246377 0.0023839405 1.603912 AGGAUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SART3 2 2634 0.010869565 0.0038186524 1.509159 AAAAAA,AAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
TARDBP 2 2654 0.010869565 0.0038476365 1.498250 GUUUUG,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZNF638 1 1773 0.007246377 0.0025708878 1.494993 UGUUGG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RC3H1 1 1786 0.007246377 0.0025897275 1.484460 CCCUUC CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
AGO2 1 1830 0.007246377 0.0026534924 1.449367 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPK 9 9304 0.036231884 0.0134848428 1.425921 AAAAAA,ACCCAU,ACCCUU,CAACCC,CCCCAA,CCCCCA,CCCCUA,UCCCCC,UCCCCU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
SRSF4 3 3740 0.014492754 0.0054214720 1.418575 AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PUM2 1 1890 0.007246377 0.0027404447 1.402850 UGUAGA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPU 1 1965 0.007246377 0.0028491350 1.346736 AAAAAA AAAAAA,CCCCCC,GGGGGG,UUUUUU
PCBP2 10 11045 0.039855072 0.0160079069 1.315979 AACCCU,AAUUCA,CCCCCA,CCCUAA,CCCUUC,CCUCCA,CCUUCC,CUAACC,CUCCCC,CUUCCU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
RBM4 2 3065 0.010869565 0.0044432593 1.290604 CCUUCC,CUUCCU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
ESRP2 1 2150 0.007246377 0.0031172377 1.216992 GGGAAG GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
PABPC1 3 4443 0.014492754 0.0064402624 1.170140 AAAAAA,AAAAAC,CUAACC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
IGF2BP3 3 4815 0.014492754 0.0069793662 1.054164 AAAAAC,AAACUC,AAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
TRA2B 5 7329 0.021739130 0.0106226650 1.033148 AAGAAC,AAUAAG,AGAAGA,GAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX1 1 5 0.09090909 0.0003929788 7.853829 GCAUGA AGCAUG,GCAUGU,UGACUG,UGCAUG
RBM46 1 14 0.09090909 0.0009824469 6.531901 AUGAAA AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
SRSF9 2 134 0.13636364 0.0088420225 3.946939 AUGAAA,UGAAAG AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBFOX2 2 124 0.007142857 0.0006297864 3.503567 UGACUG,UGCAUG UGACUG,UGCAUG
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAC,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 UGACUG,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRP14 1 218 0.004761905 0.0011033857 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 ACUUAA,GAUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUUCAG UUCAGA,UUUCAG
PABPC5 4 596 0.011904762 0.0030078597 1.984730 AGAAAA,AGAAAG,AGAAAU,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM41 3 502 0.009523810 0.0025342604 1.909974 AUACAU,UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 3 505 0.009523810 0.0025493753 1.901395 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
QKI 5 904 0.014285714 0.0045596534 1.647577 AAUCAU,CUAACA,CUAACC,UAACCU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 7 1381 0.019047619 0.0069629182 1.451847 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
HNRNPC 10 2006 0.026190476 0.0101118501 1.372995 AUUUUU,CUUUUU,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 AAUGUU,AAUUGU,AUUGUA,GUCCAG,UAAUAU,UACAUA,UGUAAA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
NELFE 4 1059 0.011904762 0.0053405885 1.156468 GCUAAC,GGUUAG,UGGUUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AAUCAU,AUCAUG,AUCAUU,AUGAUA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
TIAL1 24 5597 0.059523810 0.0282043531 1.077549 AUUUUC,AUUUUU,CAGUUU,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UCAGUU,UUAAAU,UUCAGU,UUUAAA,UUUCAG,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZRANB2 5 1360 0.014285714 0.0068571141 1.058900 AGGGAA,AGGUUU,GGUAAA,GUAAAG,UGGUAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

Back to Home