ENSG00000110075:+:11:68505144:68596218

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000110075:+:11:68505144:68596218 ENSG00000110075 ENST00000265636 + 11 68505145 68596218 2060 AUAAGAAAACAAGCUCAGAGAGAUGUGGUGACUUGCUCAAAUAGUGACAGAACUUCCUCGGCCAUAUGGAGGGGUCAUAUAAUACCCUUGUGUCUUCAGUUUGAGGAGAGCUUGUUUCAUAUCCAUAUCCCACUGUAUUCCUGCUAAUCUGCUAAUGCAGUAAAUUGGAGGAAAACUGUUACCAGGAUAACCUGUAAUGGGCAAGGAGCCACAAAGAAGAAAACAUUUCUUUUAAUUUUUAAACUUGGUUUGAAAGACCAGCAUGUUUUGGAAAUUUGAUCUUCACUCAUCAUCCCACAUAGACACACUUCUAGAAAGAGAAGAUGUAACACUGAAGGAGUUAAUGGAUGAGGAAGAUGUUUUACAGGAAUGUAAAGCUCAGAACCGCAAACUUAUAGAGUUUCUGUUAAAAGCAGAAUGUCUCGAAGAUUUAGUCUCAUUCAUUAUAGAAGAACCACCUCAAGACAUGGAUGAAAAGAUCAGAUACAAGUAUCCAAAUAUAUCUUGUGAGUUGCUCACUUCUGAUGUCUCCCAGAUGAAUGAUAGACUGGGAGAAGAUGAAUCCUUGCUAAUGAAAUUAUAUAGCUUCCUCCUAAACGAUUCCCCUUUGAAUCCACUACUUGCCAGUUUCUUCAGCAAGGUGCUAAGUAUUCUUAUCAGCAGAAAACCAGAACAGAUUGUGGAUUUCUUAAAGAAGAAGCAUGAUUUUGUAGACCUUAUUAUAAAGCACAUAGGAACUUCUGCUAUCAUGGAUUUGUUGCUCAGGCUCCUGACGUGUAUCGAACCUCCACAGCCCAGGCAAGAUGUGCUGAAUUGGUUAAAUGAGGAGAAAAUUAUCCAGAGGCUUGUGGAAAUAGUUCAUCCAUCGCAAGAAGAAGAUCGACAUUCAAAUGCAUCACAAUCACUUUGUGAAAUUGUUCGCCUGAGCAGAGACCAGAUGUUACAAAUUCAGAACAGUACAGAGCCCGACCCCCUGCUUGCCACUCUAGAAAAGCAAGAAAUUAUAGAGCAGCUUCUAUCAAAUAUUUUCCACAAGGAGAAAAAUGAGUCAGCCAUAGUCAGUGCAAUCCAGAUAUUGCUGACUUUACUUGAGACACGACGACCAACAUUUGAAGGCCAUAUAGAGAUCUGCCCACCAGGCAUGAGCCAUUCAGCUUGUUCAGUAAACAAGAGUGUUCUAGAAGCCAUCAGAGGAAGACUUGGAUCUUUUCAUGAACUCCUGCUGGAGCCACCCAAGAACAUGUUCUUCAAGUAUACAUGGAAUAACUUUUUGCAUACACAAGUGGAAAUUUGUAUUGCACUGAUUCUUGCAAGUCCUUUUGAAAACACAGAAAAUGCCACAAUUACCGAUCAAGACUCCACUGGUGAUAAUUUGUUAUUAAAACAUCUUUUCCAAAAAUGUCAAUUAAUAGAACGAAUACUUGAAGCCUGGGAAAUGAAUGAGAAGAAACAGGCUGAGGGAGGAAGACGGCAUGGUUACAUGGGACACCUAACGAGGAUAGCUAACUGUAUCGUGCACAGCACUGACAAGGGCCCCAACAGUGCAUUAGUGCAGCAGCUUAUCAAAGAUCUUCCCGACGAAGUCAGGGAACGAUGGGAGACGUUCUGCACAAGCUCCUUAGGAGAAACUAACAAGAGGAACACGGUAGAUCUAGCCUUUUCUGAUUAUCAGAUGCAACAAAUGACGUCCAAUUUUAUUGACCAGUUUGGCUUCAACGAUGAGAAGUUUGCAGAUCAAGAUGACAUUGGCAAUGUUUCUUUUGAUCGAGUAUCAGACAUCAACUUUACUCUCAAUACAAAUGAAAGUGGAAAUAUUGCCUUGUUUGAAGCAUGUUGUAAGGAAAGAAUACAACAGUUUGAUGAUGGUGGCUCUGAUGAGGAAGAUAUAUGGGAGGAAAAGCACAUCGCAUUCACACCAGAAUCCCAAAGACGAUCCAGCUCGGGGAGUACAGACAGUGAGGAAAGUACAGACUCUGAAGAAGAAGAUGGAGCAAAGCAAGACUUGUUUGAACCCAGCAGUGCCAACACGGAGGAUAAAAUGGAGGUGGACCUGAGUGAACAUAAGAAAACAAGCUCAGAGAGAUGUGGUGACUUGCUCAAAUAGUGACAG circ
ENSG00000110075:+:11:68505144:68596218 ENSG00000110075 ENST00000265636 + 11 68505145 68596218 22 CCUGAGUGAACAUAAGAAAACA bsj
ENSG00000110075:+:11:68505144:68596218 ENSG00000110075 ENST00000265636 + 11 68504945 68505154 210 CCUCUGUCAUUGGGGUCUGGUUUCAAUUUACUUCAUUUCUUAAGAGUUUAAACUGGUUUUUAUAAUUUUUCCUUAUUUCUUUGAGUAUCUUGGUUUCACUUAUUUGUUCUUUUCUAUGUCUUCUUAGAUCUAAAGGAAUGAAGAAUUUUAGGAUUUGAAGUGUCUUAAGUAAUCAUUUAGUCUAAACCUCUCAUUUACAGAUAAGAAAAC ie_up
ENSG00000110075:+:11:68505144:68596218 ENSG00000110075 ENST00000265636 + 11 68596209 68596418 210 CUGAGUGAACGUAAGUGGAUUCAUUCUUCAGAUCAGCUGCCCUGUGUUGGAAUUAGGUAUUGUGAACAAUUGGCAAAGGAGCAGUUCACAGCAUCUGAGAUGAUAUCUGAAGGAAAGGUUGGGUUGAAGCGUGUUGUCAAGUGAAUUCCUCUUGGAGGUUUAAGUUUCAGAGACAGCUUCAGGGAAGGAGCACAGAAUGCAUUUGUGGAU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ANKHD1 5 339 0.0029126214 0.0004927293 2.563451 AGACGA,AGACGU,GACGAA,GACGAU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
RBMY1A1 5 489 0.0029126214 0.0007101099 2.036204 ACAAGA,CAAGAC ACAAGA,CAAGAC
RBMS3 14 1283 0.0072815534 0.0018607779 1.968340 AAUAUA,AUAUAG,AUAUAU,CAUAUA,UAUAGA,UAUAGC,UAUAUA,UAUAUC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SRSF11 7 688 0.0038834951 0.0009985015 1.959519 AAGAAG AAGAAG
SRSF4 40 3740 0.0199029126 0.0054214720 1.876223 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBM6 10 1054 0.0053398058 0.0015289102 1.804284 AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBMS1 4 497 0.0024271845 0.0007217036 1.749805 AUAUAG,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPN1 11 1222 0.0058252427 0.0017723764 1.716633 AAAAGA,AGAAGA AAAAGA,AGAAGA
FXR1 3 411 0.0019417476 0.0005970720 1.701379 ACGACG,AUGACA,AUGACG ACGACA,ACGACG,AUGACA,AUGACG
AKAP1 3 426 0.0019417476 0.0006188101 1.649787 AUAUAU,UAUAUA AUAUAU,UAUAUA
PABPC3 10 1234 0.0053398058 0.0017897669 1.577016 AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
NONO 12 1498 0.0063106796 0.0021723567 1.538534 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SNRPB2 7 991 0.0038834951 0.0014376103 1.433683 AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC5 18 2400 0.0092233010 0.0034795387 1.406387 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBM41 9 1318 0.0048543689 0.0019115000 1.344579 AUACAU,AUACUU,UACAUG,UACUUG,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TRA2A 50 6871 0.0247572816 0.0099589296 1.313790 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBFOX1 7 1077 0.0038834951 0.0015622419 1.313738 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
NXF1 1 286 0.0009708738 0.0004159215 1.222972 AACCUG AACCUG
HNRNPA0 2 453 0.0014563107 0.0006579386 1.146293 AGAUAU AAUUUA,AGAUAU,AGUAGG
SRSF5 57 8869 0.0281553398 0.0128544391 1.131142 AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,GAAGAA,GAGGAA,GGAAGA,UACAGA,UGCAGA,UGCAGC,UGCAUA,UGCAUC AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC
CNOT4 1 314 0.0009708738 0.0004564992 1.088671 GACAGA GACAGA
TRA2B 45 7329 0.0223300971 0.0106226650 1.071844 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
RBM3 12 2152 0.0063106796 0.0031201361 1.016186 AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACU,AGACGA,GAAACU,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPL 1 14 0.09090909 0.0009824469 6.531901 ACAUAA AAAUAA,AAAUAC,AACAAA,ACACCA,ACAUAA,ACAUAC,CACAAC,CACCAC,CAUAAA,CAUACA
PUM1 1 16 0.09090909 0.0011134399 6.351329 ACAUAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG
SRSF9 1 134 0.09090909 0.0088420225 3.361976 UGAACA AGGAAA,AGGAAC,AGGACA,AGGACC,AGGAGA,AGGAGC,AUGAAC,AUGACA,AUGAGA,AUGAGC,CUGGAU,GAAGCA,GAAGCC,GAAGGA,GAAGGC,GAUGCA,GAUGCC,GAUGGA,GAUGGC,GGAAAA,GGAAAG,GGAACA,GGAACG,GGAAGC,GGAAGG,GGACAA,GGACAG,GGACCA,GGACCG,GGAGAA,GGAGAG,GGAGCA,GGAGCG,GGAGGA,GGAGGC,GGAUGG,GGGAGC,GGGUGG,GGUGCA,GGUGCC,GGUGGA,GGUGGC,UGAAAA,UGAACA,UGAACG,UGAAGC,UGAAGG,UGACAA,UGACAG,UGAGAA,UGAGAG,UGAGCA,UGAUGG,UGGAGC,UGGAGG,UGGUGC
SRSF1 1 625 0.09090909 0.0410007860 1.148773 UGAACA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPM 4 222 0.011904762 0.001123539 3.405417 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
EIF4B 3 226 0.009523810 0.001143692 3.057840 CUUGGA,GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
ERI1 3 228 0.009523810 0.001153769 3.045185 UUCAGA,UUUCAG UUCAGA,UUUCAG
HNRNPA3 4 349 0.011904762 0.001763402 2.755106 AAGGAG,AGGAGC AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZNF638 5 646 0.014285714 0.003259774 2.131729 GGUUGG,GUUCUU,UGUUCU,UGUUGG,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
MATR3 1 216 0.004761905 0.001093309 2.122837 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
TRA2B 11 1447 0.028571429 0.007295445 1.969505 AAGAAU,AAGGAA,AGGAAA,AUAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ZCRB1 4 666 0.011904762 0.003360540 1.824774 GAAUUA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
SNRPB2 1 288 0.004761905 0.001456066 1.709463 GUAUUG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PABPC3 1 310 0.004761905 0.001566909 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBM46 6 1091 0.016666667 0.005501814 1.598986 AAUCAU,AAUGAA,AUCAUU,AUGAAG,AUGAUA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBMX 7 1316 0.019047619 0.006635429 1.521349 AAGGAA,AAGUAA,AAGUGU,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF5 3 669 0.009523810 0.003375655 1.496371 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
QKI 4 904 0.011904762 0.004559653 1.384543 AAUCAU,ACUUAU,AUCUAA,UAAUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPA2B1 10 2033 0.026190476 0.010247884 1.353716 AAGGAA,AAGGAG,AAUUUA,AGGAGC,GAAGGA,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
CELF4 3 776 0.009523810 0.003914752 1.282618 GUGUUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZRANB2 6 1360 0.016666667 0.006857114 1.281292 AAAGGU,AGGGAA,AGGUAU,AGGUUU,GAGGUU,UAAAGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
A1CF 2 598 0.007142857 0.003017936 1.242939 AUAAUU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
CELF1 4 1097 0.011904762 0.005532044 1.105654 GUGUUG,UGUGUU,UGUUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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