ENSG00000138778:-:4:103174735:103185861

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000138778:-:4:103174735:103185861 ENSG00000138778 ENST00000380026 - 4 103174736 103185861 954 AAUUUGGUUGAUCUUGCAGGCAGUGAAAGAGCUGCUCAAACAGGCGCUGCAGGUGUGCGGCUCAAGGAAGGCUGUAAUAUAAAUCGAAGCUUAUUUAUUUUGGGACAAGUGAUCAAGAAACUUAGUGAUGGACAAGUUGGUGGUUUCAUAAAUUAUCGAGAUAGCAAGUUAACACGAAUUCUCCAGAAUUCCUUGGGAGGAAAUGCAAAGACACGUAUUAUCUGCACAAUUACUCCAGUAUCUUUUGAUGAAACACUUACUGCUCUCCAGUUUGCCAGUACUGCUAAAUAUAUGAAGAAUACUCCUUAUGUUAAUGAGGUAUCAACUGAUGAAGCUCUCCUGAAAAGGUAUAGAAAAGAAAUAAUGGAUCUUAAAAAACAAUUAGAGGAGGUUUCUUUAGAGACGCGGGCUCAGGCAAUGGAAAAAGACCAAUUGGCCCAACUUUUGGAAGAAAAAGAUUUGCUUCAGAAAGUACAGAAUGAGAAAAUUGAAAACUUAACACGGAUGCUGGUGACCUCUUCUUCCCUCACGUUGCAACAGGAAUUAAAGGCUAAAAGAAAACGAAGAGUUACUUGGUGCCUUGGCAAAAUUAACAAAAUGAAGAACUCAAACUAUGCAGAUCAAUUUAAUAUACCAACAAAUAUAACAACAAAAACACAUAAGCUUUCUAUAAAUUUAUUACGAGAAAUUGAUGAAUCUGUCUGUUCAGAGUCUGAUGUUUUCAGUAACACUCUUGAUACAUUAAGUGAGAUAGAAUGGAAUCCAGCAACAAAGCUACUAAAUCAGGAGAAUAUAGAAAGUGAGUUGAACUCACUUCGUGCUGACUAUGAUAAUCUGGUAUUAGACUAUGAACAACUACGAACAGAAAAAGAAGAAAUGGAAUUGAAAUUAAAAGAAAAGAAUGAUUUGGAUGAAUUUGAGGCUCUAGAAAGAAAAACUAAAAAAGAUCAAGAGAAUUUGGUUGAUCUUGCAGGCAGUGAAAGAGCUGCUCAAACAGGCGCUGC circ
ENSG00000138778:-:4:103174735:103185861 ENSG00000138778 ENST00000380026 - 4 103174736 103185861 22 AAGAUCAAGAGAAUUUGGUUGA bsj
ENSG00000138778:-:4:103174735:103185861 ENSG00000138778 ENST00000380026 - 4 103185852 103186061 210 UUAUGGAAGAUAUAAAGAAAGGAACAGAUAGAGAACAGUUUGACUCAGAGAAAAAAGGGAAUGCCUAAACAGUAGCAUGGGAGACAUGGAUACAGAUCGAAUAUUCAGAUAUACCAUGUAUUAAAAAUGUUCUUUCAGUAGUUUGAAUUUUAUUAUUUCAAAUUAUCUGCCCUAAGGAUUUAUUUUUAUCUAUCUUACAGAAUUUGGUUG ie_up
ENSG00000138778:-:4:103174735:103185861 ENSG00000138778 ENST00000380026 - 4 103174536 103174745 210 AGAUCAAGAGGUAAGAGAGACAGAAAUGUAAAACUAAACUAAAAGCAUACUUUUAAAAGAAGUAUUCUCUUUUUUCUAUAAUGUAAGCUUUUUUAAUUUUUUUUAAAUGUACAGAUAACAUUUUAUGUGUUUAUUGUAUACAACAUGAUGUAUGAUGUUUUGAAGUAUAUAUACAUUGUGGAAUGGUUAAAUCUAGCUAACAAAUGUACU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 3 407 0.004192872 0.0005912752 2.826037 AACUAA,AACUAC,ACUACG AACUAA,AACUAC,ACUAAG,ACUACG
PABPN1 9 1222 0.010482180 0.0017723764 2.564182 AAAAGA,AGAAGA AAAAGA,AGAAGA
PABPC5 18 2400 0.019916143 0.0034795387 2.516970 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
RBMS3 9 1283 0.010482180 0.0018607779 2.493961 AAUAUA,AUAUAG,AUAUAU,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SART3 18 2634 0.019916143 0.0038186524 2.382803 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPA0 2 453 0.003144654 0.0006579386 2.256876 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC3 7 1234 0.008385744 0.0017897669 2.228167 AAAAAC,AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ERI1 3 632 0.004192872 0.0009173461 2.192401 UUCAGA,UUUCAG UUCAGA,UUUCAG
ZFP36L2 7 1277 0.008385744 0.0018520827 2.178790 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBMS1 2 497 0.003144654 0.0007217036 2.123423 AUAUAC,AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
PABPC1 24 4443 0.026205451 0.0064402624 2.024676 AAAAAA,AAAAAC,ACAAAU,ACGAAC,ACGAAU,AGAAAA,CAAACA,CAAAUA,CGAACA,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC4 6 1251 0.007337526 0.0018144033 2.015799 AAAAAA,AAAAAG AAAAAA,AAAAAG
AGO1 2 548 0.003144654 0.0007956130 1.982763 GAGGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBM3 10 2152 0.011530398 0.0031201361 1.885761 AAAACG,AAAACU,AAACGA,AAACUA,AAUACU,AGACUA,GAAACU,GAGACG AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPD 13 2837 0.014675052 0.0041128408 1.835159 AAAAAA,AAUUUA,AUUUAU,UAUUUA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SNRNP70 5 1237 0.006289308 0.0017941145 1.809629 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
AKAP1 1 426 0.002096436 0.0006188101 1.760370 AUAUAU AUAUAU,UAUAUA
RBM46 20 4554 0.022012579 0.0066011240 1.737545 AAUGAA,AAUGAU,AUCAAG,AUCAAU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUU,GAUCAA,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ZCRB1 6 1605 0.007337526 0.0023274215 1.656561 AAUUAA,ACUUAA,AUUUAA,GAAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2A 28 6871 0.030398323 0.0099589296 1.609929 AAAGAA,AAGAAA,AAGAAG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM14 1 478 0.002096436 0.0006941687 1.594581 CGCGGG CGCGCC,CGCGCG,CGCGGC,CGCGGG,GCGCGC,GCGCGG
MATR3 2 739 0.003144654 0.0010724109 1.552044 AUCUUA,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
KHDRBS1 15 4064 0.016771488 0.0058910141 1.509423 AUUUAA,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAG,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
HNRNPAB 6 1782 0.007337526 0.0025839306 1.505726 AAAGAC,AAGACA,ACAAAG,AUAGCA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBM41 4 1318 0.005241090 0.0019115000 1.455162 AUACAU,UACAUU,UACUUG,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
IGHMBP2 2 813 0.003144654 0.0011796520 1.414540 AAAAAA AAAAAA
YBX2 4 1480 0.005241090 0.0021462711 1.288035 AACAAC,ACAACA,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL3 8 2867 0.009433962 0.0041563169 1.182558 AUUUAU,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TRA2B 22 7329 0.024109015 0.0106226650 1.182427 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAUUA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
PPIE 55 18315 0.058700210 0.0265436196 1.145001 AAAAAA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUUAA,AAUUAU,AAUUUA,AUAAAU,AUAUAA,AUAUAU,AUUAAA,AUUUAA,AUUUAU,UAAAAA,UAAAUA,UAAAUU,UAAUAU,UAUAAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAUA,UUAUUA,UUAUUU,UUUAAU,UUUAUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
SRSF10 40 13860 0.042976939 0.0200874160 1.097271 AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGGAA,ACAAAG,AGAGAA,AGAGAC,AGAGGA,CAAAGA,GAAAGA,GAGAAA,GAGACG,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
TUT1 1 678 0.002096436 0.0009840095 1.091195 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
IGF2BP3 13 4815 0.014675052 0.0069793662 1.072198 AAAAAC,AAAACA,AAACAC,AAAUCA,AACACA,AACUCA,ACACUC,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
SRSF11 1 688 0.002096436 0.0009985015 1.070102 AAGAAG AAGAAG
RBM6 2 1054 0.003144654 0.0015289102 1.040398 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZRANB2 8 3173 0.009433962 0.0045997733 1.036301 AAAGGU,AGGUAU,AGGUUU,GAGGUU,GGUGGU,UAAAGG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PUM1 1 16 0.09090909 0.001113440 6.351329 AGAAUU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG
SRSF10 2 160 0.13636364 0.010544931 3.692837 AAGAGA,AGAGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF7 1 128 0.09090909 0.008449044 3.427565 AGAGAA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF2 3 479 0.18181818 0.031438302 2.531901 AAGAGA,AGAGAA,GAGAAU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.041000786 1.733736 AAGAGA,AGAGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 6 217 0.016666667 0.0010983474 3.923559 AUAUAC,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 1 82 0.004761905 0.0004181782 3.509349 AAGAAG AAGAAG
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPA0 2 200 0.007142857 0.0010126965 2.818299 AGAUAU AAUUUA,AGAUAU,AGUAGG
ERI1 2 228 0.007142857 0.0011537686 2.630147 UUCAGA,UUUCAG UUCAGA,UUUCAG
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACAU,AUACUU,UACAUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
ENOX1 6 756 0.016666667 0.0038139863 2.127594 AGACAG,AUACAG,GUACAG,UAUACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
PUM2 6 764 0.016666667 0.0038542926 2.112428 GUAUAU,UAUAUA,UGUAAA,UGUACA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
CPEB4 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,CUUUUU,GCAUAC,GGAUAC,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL3 14 1928 0.035714286 0.0097188634 1.877642 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 CUAAAA,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
YBX2 1 263 0.004761905 0.0013301088 1.839994 ACAACA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
ELAVL4 21 2916 0.052380952 0.0146966949 1.833551 AAAAAA,AUUUAU,UAUCUA,UAUUUU,UUAUUU,UUGUAU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
CPEB2 10 1487 0.026190476 0.0074969770 1.804661 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPCL1 9 1381 0.023809524 0.0069629182 1.773775 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SRSF10 20 2937 0.050000000 0.0148024990 1.756087 AAAAGA,AAAGAA,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AGAGAA,AGAGAC,AGAGAG,GAGAAA,GAGAAC,GAGACA,GAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 AGACAU,AGAUCA,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBFOX1 1 287 0.004761905 0.0014510278 1.714464 AGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
PUM1 14 2172 0.035714286 0.0109482064 1.705807 AAUAUU,AAUGUU,AGAAUU,AGAUAA,AUUGUA,CAGAAU,GUAUAU,UAAUGU,UAUAUA,UGUAAA,UGUACA,UGUAUA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
TIAL1 37 5597 0.090476190 0.0282043531 1.681620 AAUUUU,AUUUUA,AUUUUU,CAGUUU,CUUUUA,CUUUUU,UAUUUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SYNCRIP 6 1041 0.016666667 0.0052498992 1.666604 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,AGAUAU,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAG,AGAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AGUAUA,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PABPC4 2 462 0.007142857 0.0023327287 1.614483 AAAAAA,AAAAAG AAAAAA,AAAAAG
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPU 6 1136 0.016666667 0.0057285369 1.540727 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
KHDRBS3 9 1646 0.023809524 0.0082980653 1.520692 AGAUAA,AUAAAG,AUUAAA,UAAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
PPIE 53 9262 0.128571429 0.0466696896 1.462012 AAAAAA,AAAAAU,AAAUUA,AAUAUU,AAUUAU,AAUUUU,AUAUAA,AUAUAU,AUUAAA,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUUAA,UAUUAU,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF4 2 558 0.007142857 0.0028164047 1.342647 AAGAAG,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PABPC1 6 1321 0.016666667 0.0066606207 1.323237 AAAAAA,ACAAAU,AGAAAA,CGAAUA,CUAACA,GAAAAA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
ELAVL2 51 9826 0.123809524 0.0495112858 1.322293 AAUUUG,AAUUUU,AUACUU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,CAUUUU,CUUUUA,CUUUUU,GAUUUA,UAAUUU,UACUUU,UAUAUA,UAUUAU,UAUUGU,UAUUUU,UCUUUU,UGUAUU,UUAAUU,UUAUGU,UUAUUG,UUAUUU,UUCUUU,UUGUAU,UUUAAU,UUUAUG,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SART3 3 777 0.009523810 0.0039197904 1.280762 AAAAAA,AGAAAA,GAAAAA AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 AUUUAU,UAGUUU,UAUUUU,UGUUUU,UUAUUU,UUGGUU,UUUAUU,UUUGGU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
TIA1 25 5140 0.061904762 0.0259018541 1.256995 AUUUUU,CUUUUA,CUUUUU,GUUUUG,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AAAAAA,AGAUAU,AGGUAA,AGUAUA,AGUUUG,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBM46 4 1091 0.011904762 0.0055018138 1.113560 AUCAAG,AUGAUG,GAUCAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
SFPQ 31 7087 0.076190476 0.0357114067 1.093226 AAGAGG,AAGGAA,AAGGGA,AGAGAG,AGAGGU,AGAUCG,AGGAAC,CUAAGG,GAGGUA,GGAAGA,GGUAAG,GUAAGA,GUAGUU,UAAGAG,UAAGGA,UAAUGU,UAAUUU,UAGAGA,UAGUUU,UGAUGU,UGGAAG,UGGUUG,UUAAUU,UUGAAG,UUGGUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
SRSF5 6 1578 0.016666667 0.0079554615 1.066948 AAGAAG,AUAAAG,GGAAGA,UACAGA AACAGC,AAGAAG,AGAAGA,AGGAAG,AUAAAG,CAACAG,CACAGA,CACAGC,CACAUA,CACAUC,CACGGA,CACGGC,CACGUA,CACGUC,CCGCAG,CGCAGA,CGCAGC,CGCAGG,CGCAUA,CGCAUC,CGCGGA,CGCGGC,CGCGUA,CGCGUC,GAAGAA,GAGGAA,GGAAGA,UAAAGG,UACAGA,UACAGC,UACAUA,UACAUC,UACGGA,UACGGC,UACGUA,UACGUC,UGCAGA,UGCAGC,UGCAUA,UGCAUC,UGCGGA,UGCGGC,UGCGUA,UGCGUC

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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