ENSG00000163938:+:3:52687245:52688192

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000163938:+:3:52687245:52688192 ENSG00000163938 ENST00000496254 + 3 52687246 52688192 336 GUUCGAGAACAUCAUCGAAAAUUAAGAAAGGAGGCUAAAAAGCGGGGUCACAAGAAGCCUAGGAAAGACCCAGGAGUUCCAAACAGUGCUCCCUUUAAGGAGGCUCUUCUUAGGGAAGCUGAGCUAAGGAAACAGAGGCUUGAAGAACUAAAACAGCAGCAGAAACUUGACAGGCAGAAGGAACUAGAAAAGAAAAGAAAACUUGAAACUAAUCCUGAUAUUAAGCCAUCAAAUGUGGAACCUAUGGAAAAGGAGUUUGGGCUUUGCAAAACUGAGAACAAAGCCAAGUCGGGCAAACAGAAUUCAAAGAAGCUGUACUGCCAAGAACUUAAAAAGGUUCGAGAACAUCAUCGAAAAUUAAGAAAGGAGGCUAAAAAGCGGGGUCA circ
ENSG00000163938:+:3:52687245:52688192 ENSG00000163938 ENST00000496254 + 3 52687246 52688192 22 AACUUAAAAAGGUUCGAGAACA bsj
ENSG00000163938:+:3:52687245:52688192 ENSG00000163938 ENST00000496254 + 3 52687046 52687255 210 GCAUAGAGAGCCUUCUAGUUACAAUUUCUUGCUGUUUUAUACUUACAUAUGCAUUACUUUGUAAGAUUCCAAUUAAAGCUCCAUUUUCCUAGGACAUUUUAUAGGCAUAACUAAAUUGCAGCCAGAUUGGUUUCUCACUUGAAUUCUGCUUAAGUAUAAAGAUAUUUUUGUAAGCAGACAAAAUCUCUUUAUUUUAAUAGGUUCGAGAAC ie_up
ENSG00000163938:+:3:52687245:52688192 ENSG00000163938 ENST00000496254 + 3 52688183 52688392 210 ACUUAAAAAGGUAUCUUAGCCUAGGUCAGUGUCUGACAGUAGUAAUGAGGUUUAAAAGACUCAAGUCAUUUUUUUUUUAACCUUUUAAGAUGAAGGGUGCAUGUGCAGGUUUGUUAUAUGGGUAAACUUGCGUCAUAGGGGUUUGCUGUACAGAUUAUUUCAUCACCCAGGUAUUAAGCCUAGUACGACAUUAGUUAUCUUUCCUGAUCC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM25 2 268 0.008928571 0.0003898359 4.517491 CGGGCA,UCGGGC AUCGGG,CGGGCA,UCGGGC
HNRNPA1L2 2 314 0.008928571 0.0004564992 4.289745 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
RBM42 2 407 0.008928571 0.0005912752 3.916528 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
SRSF11 2 688 0.008928571 0.0009985015 3.160593 AAGAAG AAGAAG
RBMY1A1 1 489 0.005952381 0.0007101099 3.067353 ACAAGA ACAAGA,CAAGAC
HNRNPM 3 999 0.011904762 0.0014492040 3.038206 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
HNRNPA3 5 2140 0.017857143 0.0031027457 2.524884 AAGGAG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
RBM3 5 2152 0.017857143 0.0031201361 2.516820 AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPA2B1 21 8607 0.065476190 0.0124747476 2.391960 AAGAAG,AAGGAA,AAGGAG,ACUAGA,AGAAGC,AGGAAC,CAAGAA,CCAAGA,GAAGCC,GAAGGA,GCCAAG,GGAACC,UAGGGA,UUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
PABPC5 5 2400 0.017857143 0.0034795387 2.359533 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPN1 2 1222 0.008928571 0.0017723764 2.332744 AAAAGA AAAAGA,AGAAGA
PABPC3 2 1234 0.008928571 0.0017897669 2.318658 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PABPC4 2 1251 0.008928571 0.0018144033 2.298934 AAAAAG AAAAAA,AAAAAG
TRA2B 16 7329 0.050595238 0.0106226650 2.251856 AAAGAA,AAGAAC,AAGAAG,AAGGAA,AGAAGG,AGGAAA,GAAAGA,GAAGAA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPAB 3 1782 0.011904762 0.0025839306 2.203900 AAAGAC,ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
YBX2 2 1480 0.008928571 0.0021462711 2.056597 AACAUC,ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PABPC1 8 4443 0.026785714 0.0064402624 2.056272 ACUAAU,AGAAAA,CAAACA,CUAAUC,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
KHDRBS1 7 4064 0.023809524 0.0058910141 2.014951 CUAAAA,GAAAAC,UAAAAA,UAAAAC,UUAAAA AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
SART3 4 2634 0.014880952 0.0038186524 1.962331 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
ZCRB1 2 1605 0.008928571 0.0023274215 1.939697 AAUUAA,ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
TRA2A 11 6871 0.035714286 0.0099589296 1.842439 AAAGAA,AAGAAA,AAGAAG,AGAAAG,GAAAGA,GAAGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
SRSF10 23 13860 0.071428571 0.0200874160 1.830209 AAAAGA,AAAGAA,AAAGAC,AAAGGA,AAGAAA,AAGAAG,AAGGAA,AAGGAG,ACAAAG,CAAAGA,GAAAGA,GAGAAC AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBMX 7 4925 0.023809524 0.0071387787 1.737790 AAGAAG,AAGGAA,AGAAGG,AUCAAA,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SNRNP70 1 1237 0.005952381 0.0017941145 1.730195 AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
ACO1 1 1283 0.005952381 0.0018607779 1.677561 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM5 9 6879 0.029761905 0.0099705232 1.577726 AAGGAA,AAGGAG,AGGGAA,CUCUUC,GAAGGA,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
MSI1 3 2770 0.011904762 0.0040157442 1.567800 AGGAGG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
NONO 1 1498 0.005952381 0.0021723567 1.454206 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
HNRNPDL 10 8759 0.032738095 0.0126950266 1.366707 AACAGC,AACUAA,ACAGCA,ACUAGA,CCUUUA,CUAGGA,CUUUAA,GAACUA AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
IGF2BP2 9 8408 0.029761905 0.0121863560 1.288200 AAAACA,AAUUCA,CAAAAC,CAAACA,CCAAAC,GAAAAC,GAAUUC,GCAAAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
FMR1 22 20291 0.068452381 0.0294072466 1.218929 AAGCGG,AAGGAA,AAGGAG,AGCAGC,AGGAGG,AGGAGU,CUAAGG,CUAUGG,GAAGGA,GACAGG,GCUAAG,GCUGAG,GGCUAA,UAAGGA,UAUGGA,UGACAG AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
HNRNPLL 3 3534 0.011904762 0.0051229360 1.216496 CAAACA,GCAAAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ZNF638 1 1773 0.005952381 0.0025708878 1.211200 GGUUCG CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
ZFP36 31 28400 0.095238095 0.0411588414 1.210336 AAAAAG,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAGAA,AAAGGA,AACAAA,AAGAAA,AAGGAA,ACAAAG,AGAAAG,AGGAAA,CAAACA,CAAAGA,CCCUUU,GGAAAG,UAAGGA,UCUUCU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
RC3H1 1 1786 0.005952381 0.0025897275 1.200667 UCCCUU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
AGO2 1 1830 0.005952381 0.0026534924 1.165574 AGUGCU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
SRSF4 3 3740 0.011904762 0.0054214720 1.134782 AAGAAG,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
QKI 2 2805 0.008928571 0.0040664663 1.134654 ACUAAU,CUAAUC AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
IGF2BP3 4 4815 0.014880952 0.0069793662 1.092299 AAAACA,AAUUCA,CAAACA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ZNF638 1 12 0.09090909 0.000851454 6.738352 GGUUCG CGUUCG,CGUUCU,CGUUGG,GGUUCU,GGUUGG,GUUCUU,GUUGGU,UGUUCU,UGUUGG,UGUUGU
ZRANB2 1 45 0.09090909 0.003012837 4.915230 AAAGGU AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,UAAAGG,UGGUAA
ZFP36 1 126 0.09090909 0.008318051 3.450107 AAAAGG AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 35 0.004761905 0.0001813785 4.714464 GCAUAA GCAUAA
FXR1 1 69 0.004761905 0.0003526804 3.755106 ACGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
SSB 5 505 0.014285714 0.0025493753 2.486358 CUGUUU,GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPAB 3 351 0.009523810 0.0017734784 2.424957 AAAGAC,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
HNRNPA1L2 1 188 0.004761905 0.0009522370 2.322146 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AGO1 2 283 0.007142857 0.0014308746 2.319604 GUAGUA,UGAGGU AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRPB2 2 288 0.007142857 0.0014560661 2.294425 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACUU,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
MATR3 1 216 0.004761905 0.0010933091 2.122837 AUCUUA AAUCUU,AUCUUA,AUCUUG,CAUCUU
ZCRB1 5 666 0.014285714 0.0033605401 2.087808 AAUUAA,ACUUAA,GCUUAA,GGUUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CPEB4 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
CPEB2 11 1487 0.028571429 0.0074969770 1.930192 AUUUUU,CAUUUU,CCUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ELAVL3 12 1928 0.030952381 0.0097188634 1.671191 AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ZRANB2 8 1360 0.021428571 0.0068571141 1.643862 AAAGGU,AGGUAU,AGGUUU,GAGGUU,GGGUAA,GGUAAA AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AGGACA,CAGACA,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUCC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 8 1381 0.021428571 0.0069629182 1.621772 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
NOVA2 8 1434 0.021428571 0.0072299476 1.567479 AGGCAU,AGUCAU,AUCACC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
KHDRBS1 11 1945 0.028571429 0.0098045143 1.543055 CAAAAU,CUAAAU,UAAAAA,UAAAAG,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ACO1 1 325 0.004761905 0.0016424829 1.535660 CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ELAVL4 16 2916 0.040476190 0.0146966949 1.461582 GUAUCU,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 UUUUUU AAAAAA,UUUUUU
KHDRBS2 5 1051 0.014285714 0.0053002821 1.430432 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
FXR2 3 730 0.009523810 0.0036829907 1.370661 AGACAA,GACAAA,UGACAG AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ZFP36L2 3 774 0.009523810 0.0039046755 1.286336 UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
ELAVL1 16 3309 0.040476190 0.0166767432 1.279236 UAUUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGGUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
HNRNPC 9 2006 0.023809524 0.0101118501 1.235492 AUUUUU,UUUUUA,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA1 6 1428 0.016666667 0.0071997179 1.210953 AUCACC,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AUAAAG,AUUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ELAVL2 46 9826 0.111904762 0.0495112858 1.176442 AUACUU,AUAUUU,AUUAUU,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUUUA,GUUUUA,UACUUU,UAGUUA,UAUACU,UAUUUU,UCAUUU,UUAAGU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUUU,UUUAAG,UUUAAU,UUUAUA,UUUAUU,UUUCAU,UUUCUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIAL1 25 5597 0.061904762 0.0282043531 1.134133 AUUUUA,AUUUUC,AUUUUU,CUUUUA,UAAAUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPDL 11 2689 0.028571429 0.0135530028 1.075961 AACCUU,AACUAA,ACAUUA,AGAUAU,CAUUAG,CUAGGA,CUAGUA,UAAGUA,UAGGCA,UCUGAC,UUAGCC AACAGC,AACCUU,AACUAA,AAUACC,AAUUUA,ACACCA,ACAGCA,ACAUUA,ACCACG,ACCAGA,ACCUUG,ACUAAC,ACUAAG,ACUAGA,ACUAGC,ACUAGG,ACUGCA,ACUUUA,AGAUAU,AGUAGC,AGUAGG,AUACCA,AUCUGA,AUGCGC,AUUAGC,AUUAGG,CACCAG,CACGCA,CACUAG,CAUUAG,CCACGC,CCAGAC,CCUUGC,CCUUUA,CGAGCA,CUAACA,CUAACU,CUAAGC,CUAAGU,CUAGAG,CUAGAU,CUAGCA,CUAGCC,CUAGCG,CUAGCU,CUAGGA,CUAGGC,CUAGUA,CUUGCC,CUUUAA,CUUUAG,GAACUA,GACUAG,GAGUAG,GAUUAG,GCACUA,GCGAGC,GCUAGU,GGACUA,GGAGUA,GGAUUA,GUAGCC,GUAGCU,UAACAG,UAAGUA,UAGGCA,UCUGAC,UGCGCA,UGUCGC,UUAGCC,UUAGGC,UUUAGG
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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