ENSG00000101752:+:18:21765771:21779685

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000101752:+:18:21765771:21779685 ENSG00000101752 ENST00000261537 + 18 21765772 21779685 679 GCAUCAAGCAUGAUGGAACCAUGUGUGAUACCUGCCGCCAGCAACCAAUCAUUGGCAUUCGAUGGAAGUGUGCAGAGUGUACAAAUUAUGAUUUGUGCACAGUGUGUUAUCAUGGAGAUAAACAUCAUUUAAGACAUCGCUUUUACCGAAUUACUACACCGGGAAGUGAGAGGGUUCUGUUAGAGUCUCGUAGGAAAUCUAAGAAGAUUACAGCCAGAGGAAUCUUUGCAGGUGCCAGAGUGGUGCGAGGAGUGGACUGGCAGUGGGAAGAUCAAGAUGGAGGAAAUGGACGUAGGGGAAAGGUAACAGAAAUCCAGGACUGGAGUGCAUCAAGCCCACAUAGCGCAGCAUAUGUCCUCUGGGAUAAUGGUGCUAAGAACCUUUACAGAGUUGGCUUUGAGGGCAUGUCUGAUCUGAAAUGUGUCCAGGAUGCCAAGGGAGGUUCUUUCUACAGAGAUCACUGCCCUGUGCUAGGUGAGCAGAAUGGCAACAGGAAUCCUGGUGGAUUGCAGAUUGGUGACCUGGUAAAUAUAGAUCUCGACCUCGAAAUUGUACAGUCUUUGCAGCAUGGUCAUGGAGGAUGGACUGAUGGAAUGUUUGAGACUUUAACUACAACUGGAACUGUUUGUGGCAUUGAUGAAGAUCAUGACAUUGUAGUACAGUAUCCAAGUGGCAAUAGGCAUCAAGCAUGAUGGAACCAUGUGUGAUACCUGCCGCCAGCAACCAAUC circ
ENSG00000101752:+:18:21765771:21779685 ENSG00000101752 ENST00000261537 + 18 21765772 21779685 22 AGUGGCAAUAGGCAUCAAGCAU bsj
ENSG00000101752:+:18:21765771:21779685 ENSG00000101752 ENST00000261537 + 18 21765572 21765781 210 GGAAAAUAUAUAUAAUUCGCAUUUAUUAACGUAGUUGAGAUCCAUUAUCUUGAAGCUAUAUGUGUUAAAUUUGAAGUGUUAUUUCCUAAUUUAUUAGAAUAUCUUGUAAAAUGUUCUGUUCUUAUUUUUUUCCCCCAAGGAAUAAUAUUCAAAUAAAUAAAAUUUGUGAUUAAUCUGAGCAUGUGUCCUUGUUUUAAUAGGCAUCAAGCA ie_up
ENSG00000101752:+:18:21765771:21779685 ENSG00000101752 ENST00000261537 + 18 21779676 21779885 210 GUGGCAAUAGGUGGGUGAUAUCUCUCAAUUUUUGACAAUGACAAAUAAAACUAAUAUAGAGAAAAGUCUUAGAGAAAGCAAAUAAAGUGAUACAACCAAAUACUCAUUAAAGCUAGCUUUUAGAUGGUAAGUAAAAAUCCAGAAUAUAUAUUGGUAAGGUGGAGAGAAACAAAUGAUAAGAAUUACGUGUGUGUGUGUGUGUGUGUGUGU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 1 314 0.002945508 0.0004564992 2.689832 GUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ANKHD1 1 339 0.002945508 0.0004927293 2.579649 GACGUA AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
SNRPB2 4 991 0.007363770 0.0014376103 2.356772 AUUGCA,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
RBM42 1 407 0.002945508 0.0005912752 2.316615 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
FXR1 1 411 0.002945508 0.0005970720 2.302540 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
RBM6 4 1054 0.007363770 0.0015289102 2.267941 AAUCCA,AUCCAA,AUCCAG,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM24 10 2357 0.016200295 0.0034172229 2.245124 AGAGUG,AGUGUG,GAGUGG,GAGUGU,GUGUGA,GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
RBFOX1 4 1077 0.007363770 0.0015622419 2.236827 AGCAUG,GCAUGA,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SNRNP70 4 1237 0.007363770 0.0017941145 2.037173 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBMS1 1 497 0.002945508 0.0007217036 2.029038 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
G3BP2 5 1644 0.008836524 0.0023839405 1.890131 AGGAUG,GGAUAA,GGAUGG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
AGO1 1 548 0.002945508 0.0007956130 1.888378 GUAGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
YBX2 4 1480 0.007363770 0.0021462711 1.778612 AACAUC,ACAACU,ACAUCA,ACAUCG AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
CELF1 7 2391 0.011782032 0.0034664959 1.765038 GUGUGU,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
NONO 4 1498 0.007363770 0.0021723567 1.761184 AGAGGA,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
RBM46 14 4554 0.022091311 0.0066011240 1.742695 AAUCAU,AUCAAG,AUCAUG,AUCAUU,AUGAAG,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
RBMS3 3 1283 0.005891016 0.0018607779 1.662611 AAUAUA,AUAUAG,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
CSTF2 5 1967 0.008836524 0.0028520334 1.631488 GUGUGU,UGUGUG,UGUGUU,UGUUUG GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
SRSF11 1 688 0.002945508 0.0009985015 1.560680 AAGAAG AAGAAG
CELF5 3 1415 0.005891016 0.0020520728 1.521435 GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ESRP2 5 2150 0.008836524 0.0031172377 1.503211 GGGAAA,GGGAAG,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
MATR3 1 739 0.002945508 0.0010724109 1.457659 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
CELF2 4 1886 0.007363770 0.0027346479 1.429090 AUGUGU,GUGUGU,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
PUM2 4 1890 0.007363770 0.0027404447 1.426035 GUAAAU,UAAAUA,UGUACA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PUM1 14 5823 0.022091311 0.0084401638 1.388136 AAUGUU,AAUUGU,AGAUAA,AUUGUA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UGUACA,UGUCCA,UUGUAC,UUGUAG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
ZRANB2 7 3173 0.011782032 0.0045997733 1.356954 AAAGGU,AGGUAA,GAGGUU,GGUAAA,GUGGUG,UGGUAA,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM28 1 822 0.002945508 0.0011926949 1.304292 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
ACO1 2 1283 0.004418262 0.0018607779 1.247573 CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
TARDBP 5 2654 0.008836524 0.0038476365 1.199507 GAAUGG,GAAUGU,GUGUGU,UGUGUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
ZNF638 3 1773 0.005891016 0.0025708878 1.196250 GGUUCU,GUUCUU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
CELF4 3 1782 0.005891016 0.0025839306 1.188949 GUGUGU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ENOX1 6 3195 0.010309278 0.0046316558 1.154343 AAGACA,AGUACA,GUACAG,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
LIN28A 8 4315 0.013254786 0.0062547643 1.083486 AGGAGU,GGAGAU,GGAGGA,UGGAGA,UGGAGG,UGGAGU AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
NOVA2 7 4013 0.011782032 0.0058171047 1.018215 AGACAU,AGAUCA,AGGCAU,GAUCAC,UAGAUC AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NOVA2 1 15 0.09090909 0.001047943 6.438792 AGGCAU ACCACC,AGACAU,AGAUCA,AGGCAU,AGUCAU,CUAGAU,GAGACA,GAGGCA,GAGUCA,UAGAUC
HNRNPDL 1 35 0.09090909 0.002357873 5.268867 UAGGCA AACAGC,AAUACC,AAUUUA,ACACCA,ACAGCA,ACCAGA,AGAUAU,AGUAGG,AUCUGA,AUUAGC,AUUAGG,CACGCA,CCAGAC,CUAAGC,CUAAGU,CUAGAU,CUAGGA,CUAGGC,CUUUAG,GAACUA,GAUUAG,GCACUA,GCUAGU,UGCGCA,UUAGCC,UUAGGC,UUUAGG
G3BP1 2 69 0.13636364 0.004584752 4.894471 AUAGGC,UAGGCA ACAGGC,ACCCCC,ACCCCU,ACGCAG,ACGCCG,AGGCAC,AGGCAG,AGGCCC,AGGCCG,AUCCGC,CACAGG,CACCCG,CACCGG,CACGCA,CAGGCA,CAGGCC,CAUCCG,CCACCC,CCAGGC,CCAUAC,CCAUCG,CCCACC,CCCAGG,CCCAUC,CCCCAC,CCCCGC,CCCCUC,CCCUCC,CCCUCG,CCUAGG,CCUCCG,CUACGC,CUAGGC,UACGCA,UCCGCC
FMR1 2 117 0.13636364 0.007728583 4.141111 AUAGGC,UAGGCA AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG
HNRNPA1 1 119 0.09090909 0.007859576 3.531901 UAGGCA AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
AKAP1 7 221 0.019047619 0.0011185006 4.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
CELF5 20 669 0.050000000 0.0033756550 3.888689 GUGUGU,UGUGUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
FXR1 1 69 0.004761905 0.0003526804 3.755106 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
CELF4 20 776 0.050000000 0.0039147521 3.674935 GUGUGU,UGUGUG,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CELF2 22 881 0.054761905 0.0044437727 3.623316 AUGUGU,GUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBMS3 13 562 0.033333333 0.0028365578 3.554752 AAUAUA,AUAUAG,AUAUAU,CUAUAU,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBMS1 4 217 0.011904762 0.0010983474 3.438132 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBM24 19 888 0.047619048 0.0044790407 3.410277 GUGUGU,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CSTF2 21 1022 0.052380952 0.0051541717 3.345230 GUGUGU,UGUGUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
TARDBP 19 1034 0.047619048 0.0052146312 3.190902 GUGUGU,UGUGUG GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
RBM42 1 103 0.004761905 0.0005239823 3.183949 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
CELF1 20 1097 0.050000000 0.0055320435 3.176044 GUGUGU,UGUGUG,UGUGUU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,AUCCAG AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 AUCAAG,AUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 AGCAUG,GCAUGU AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
KHDRBS3 16 1646 0.040476190 0.0082980653 2.286227 AAAUAA,AAUAAA,AUAAAA,AUAAAG,AUUAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CELF6 11 1196 0.028571429 0.0060308343 2.244144 UGUGAU,UGUGUG,UGUGUU GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
ZFP36L2 6 774 0.016666667 0.0039046755 2.093691 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 AAGGAA AAGGAA,GAAGGA,GGGGGG
HNRNPA3 2 349 0.007142857 0.0017634019 2.018140 CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
KHDRBS2 8 1051 0.021428571 0.0053002821 2.015395 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPL 11 1419 0.028571429 0.0071543732 1.997676 AAACAA,AAAUAA,AAAUAC,AACAAA,AAUAAA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
PUM2 5 764 0.014285714 0.0038542926 1.890035 UAAAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPC1 9 1321 0.023809524 0.0066606207 1.837810 ACAAAU,ACUAAU,AGAAAA,CAAAUA,CUAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACU,AAACUA,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
PPIE 64 9262 0.154761905 0.0466696896 1.729493 AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUUAAA,AUUAAU,AUUUAU,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAU,UAAUUU,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAU,UUAAUA,UUAUUA,UUAUUU,UUUAAU,UUUAUU,UUUUAA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PUM1 14 2172 0.035714286 0.0109482064 1.705807 AAUAUU,AAUGUU,AGAAUU,CAGAAU,CCAGAA,CUUGUA,UAAAUA,UAAUAU,UAUAUA,UGUAAA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC5 3 596 0.009523810 0.0030078597 1.662801 AGAAAA,AGAAAG,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPD 8 1488 0.021428571 0.0075020153 1.514186 AAUUUA,AUUUAU,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHSRP 31 5764 0.076190476 0.0290457477 1.391284 AUGUGU,AUUUAU,GUGUGU,UAUAUU,UAUUUU,UGUGUG,UUAUUA,UUAUUU,UUUAUU ACCCUC,ACCUUC,AGCCUC,AGCUUC,AUAUUU,AUGUAU,AUGUGU,AUUAUU,AUUUAU,AUUUUA,CACCCU,CACCUU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CCCUUC,CCGCCU,CCGCUU,CCUUCC,CGCCCU,CGCCUC,CGCCUU,CGCUUC,CGGCCU,CGGCUU,CUCCCU,CUCCUU,CUGCCU,CUGCUU,CUGUAU,CUGUGU,GCCCUC,GCCUCC,GCCUUC,GCUUCC,GGCCUC,GGCUUC,GUAUAU,GUAUGU,GUGUAU,GUGUGU,UAGGUA,UAGGUU,UAGUAU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCCCUC,UCCUUC,UGCAUG,UGCCUC,UGCUUC,UGUAUA,UGUAUG,UGUGUA,UGUGUG,UUAUUA,UUAUUU,UUGUAU,UUGUGU,UUUAUA,UUUAUU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAU,ACUCAU,AUUAAC,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
FXR2 3 730 0.009523810 0.0036829907 1.370661 GACAAA,UGACAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGUGG,UAGGUG,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
ELAVL3 9 1928 0.023809524 0.0097188634 1.292679 AUUUAU,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
U2AF2 4 1071 0.011904762 0.0054010480 1.140228 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGUGUU AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GAAUUA,GAUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RALY 4 1117 0.011904762 0.0056328094 1.079612 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
ZFP36 41 9408 0.100000000 0.0474052801 1.076880 AAAAAU,AAAAGU,AAAAUA,AAACAA,AAAGCA,AAAUAA,AACAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,ACAAAU,AGAAAG,AGCAAA,AGUAAA,AUAAAG,AUAAAU,AUUUAU,CAAAUA,CAAGCA,CAAGGA,CCUUGU,UAAAUA,UAAGUA,UCUUGU,UUAUUU,UUUAAU,UUUAUU AAAAAA,AAAAAC,AAAAAG,AAAAAU,AAAACA,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAACAA,AAAGAA,AAAGCA,AAAGGA,AAAGUA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAA,AAUAAG,ACAAAC,ACAAAG,ACAAAU,ACAAGC,ACAAGG,ACAAGU,ACCUCC,ACCUCU,ACCUGC,ACCUGU,ACCUUC,ACCUUU,ACUUCC,ACUUCU,ACUUGC,ACUUGU,ACUUUC,ACUUUU,AGAAAG,AGCAAA,AGGAAA,AGUAAA,AUAAAC,AUAAAG,AUAAAU,AUAAGC,AUAAGG,AUAAGU,AUUUAA,AUUUAU,CAAACA,CAAAGA,CAAAUA,CAAGCA,CAAGGA,CAAGUA,CCCUCC,CCCUCU,CCCUGC,CCCUGU,CCCUUC,CCCUUU,CCUUCC,CCUUCU,CCUUGC,CCUUGU,CCUUUC,CCUUUU,GCAAAG,GGAAAG,GUAAAG,UAAACA,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UAAGUA,UAUUUA,UCCUCC,UCCUCU,UCCUGC,UCCUGU,UCCUUC,UCCUUU,UCUUCC,UCUUCU,UCUUGC,UCUUGU,UCUUUC,UCUUUU,UUAUUU,UUGUGC,UUGUGG,UUUAAA,UUUAAU,UUUAUA,UUUAUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
HNRNPCL1 5 1381 0.014285714 0.0069629182 1.036809 AUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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