ENSG00000134884:-:13:106557047:106559657

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000134884:-:13:106557047:106559657 ENSG00000134884 ENST00000472226 - 13 106557048 106559657 2610 UCGACAGCAAGAAAUAGAAGAAAAACUCAUCGAGGAAGAAACAGCACGAAGAGUAGAAGAAUUGGUAGCAAAAAGGGUGGAGGAAGAACUGGAGAAAAGGAAGGAUGAAAUUGAACGAGAAGUUCUCCGAAGGGUGGAGGAAGCCAAACGCAUCAUGGAAAAGCAGUUGCUCGAAGAACUCGAGCGACAGAGACAAGCUGAGCUUGCCGCACAAAAAGCUAGAGAGGUAACGCUCGGUCGUUUGGAAAGUAGAGACAGUCCAUGGCAAAACUUUCAGUGUUGGGUUCUGCCUCCUGCUCAGUUCAGAAAGAGAUGGAAUACAGACUAUCUAAUUCCUUUCUCGUCUAAACUUAACAUUGCUGCGAAAGUUAAUUUUUUAGCCUAUUCAGAAGUGCUGACUGAUAACUUAAAAGUUGGAAGCUUUUAUAAAACAUAUUCAAGGAUACUUUUUGAUUUAAUGGAACUGGCUAUUUGAGAAGUGUUUGAAACUUUUGCCAUGGCUGCAGGACUUACAUUCUUUUUUGGGAGGACGGUGGGGAGACAGGGAGUGGUAAAGGGAAAAGGUUAAAAAUCCACCUGUGGUUGUAUAUUCUUCUAUUCUGUCACUCUGUUACCUAGACUGUGAGAGGCUUUUGCCUUCAGUCAGAUUAAAAAGAGCAGGGCCUAACAUUGAGUGAUAGCACCUGCUUUGAUAAAUAGGUUUUCUCACUCUUCUUUUUUUCCUUCUUUUAUCCCUCACUCCCUCCCCUAAACCCUGCUUCAGCACAAUGGACUAAUUCUAGCAUUCUGAUCAUAAGGCCCUCCAUUUUCCUAAUGUGUUUCAAGGAAUCUUUUUAGGAAAAAUAUCCAGAUUAUUCAUCCACUUUUUUUAGUAUCUACUAACAACUCCUUUUUUUCUCUAGAGAGUUAUGAAGGAACAGGUUGUCCUUGUCUGGAGUCAAGCUAAACACAUGAUUUGUUUUAUCAGCAGCUGGAGCAGAAGUUGAAAAUGUCUUUCUGUGAGACAGUAAUUUGCUACUGAAGCUUUAUGGCUUGUUUGCACUGAUUACUCCAGGAUCCAAAAACUUGGUGAAAGUCACUGAAACACUCAAGGCAAAUUACUUUACAGCCCUGAGUGUCUGUCACCAUAGUUUGCAUAAUGAAUAUGAAUCCCAUUGGUGUGUGAUGUAGGAAAUCCUGUAGUUGUAUUUUCUUGAACUGAAAUAUUUGACUCAAAAUAAUUAAGACUCAUUGUCAUUUUUCAUCUUGGCAUUAUUGUGGACAAGUUGACAUAUUAAAUCUCUUUGCUUUCUGGUAAGCUUAGCUUUUAAAAUGCAUUUUCCCUUGUCCUGUCUUUAACUAGAUAUACAUGCUUAUAUUUAUAGUGGGUUUCACAGACUAUAAAAUUGAAUGUAUGAAAUUUUUAUUUAUAUCAGUGCUUUUAAUAAUGAAGAUAUUUUUGGAGUAAUGGUGCUGUCUUGUAGCGAGUUAUUAAUCAUAGUAAGAUUUUUUUCUCUUCAUUUGCUUUUUUUGUUUCAUAUUAACAAUUUUUUUUUUACACGGACACAACCCUCUGACAGUCUUUCCAAAUAUUAAAAUCAUUUGAAUAUGUAUGCUGUGAUCUGAACACUGCUCAAGCCAUCAAGCAGUCUUCAUACAGUUUGCAUUAUAAAAUCUCAUUAAAUUCUCCAAGAAAAAAUAAGUUGAAGAAUUUUAUUUCCUGACCAUGCAUCCCCUGGAUUUCUGAGUUUCAGUUCAGAUUGUAGAUGACAAUAUAAGCUGCCUUCCGAAAUUGUCAACAUCUGAAUGUUAAGUCCAUUUUCCCCAUGGAAGAAGCCCGUAGUUCCAUGAAGUAUGGAUUACCAUUUGUAUUUUUCACUAACAGUAAAUGUAUUUUUCUUAUUAAUUGUUUGCCUUAGGAAUGAUGAAUUACAUUUUUUGUUCCUUCUUACCAUAAACAUCUGCAUUCCUCAGCUCAGCCUUCCUUGUAUGUUGUUUCUUUAUAAAUGGUUGAGCUGCUGAUGCAGGUAUUGCCAAGCUAACAGUACAAAUCAUUUUAAAGAGGAAGCUGGCGCGUAUGGCAGCCGAGGAGCACACUCUGCAGGACACUGGACAAGACAGUAAAUAUUCAACUUUUAAUGCUGAUUAAAGGAGUAUAGGUAAAGAAUACGUAGGUAUACAUAAUUGGUGAGACAAAUAUUCACUUUAUUUAUAUUUUAUAUAUUAUUUUUUUAAUUUGGUAAAUACUAUCCAGUUUUGUAGUUGUCCUUGUUGAUUUGUGUGAUAUUAAAGUAUUAGUAAUAAUUGCCAGGAAACUAUCAUUAGGGAGGGUUUAGUUGGUUGCUGUUUGGACUGGGAGGGAUGAUUUAAAUUUAGUGCUAGAAACCAAUUUUAGUGACUGCACAGUUUAUCAUUUGUCAGACAGAAGGUAGCUAUAAAGCUACCCUGUAAGUCAUAUCAAAAAAGUUCAGAGGAAGAUUAGUAAAUAUUUAUCAAUAAAAAUAAACAUUUUGUUUUUCUAAUAUCUUAACAUAUCCUCCCCUUUAGGAGGAAGAACGUGCAAAACGUGAGGAGCUAGAGCGAAUACUGGAAGAGAAUAACCGAAAAAUUGCAGAAGCACAAGCCAAACUGUCGACAGCAAGAAAUAGAAGAAAAACUCAUCGAGGAAGAAACAGCACGAA circ
ENSG00000134884:-:13:106557047:106559657 ENSG00000134884 ENST00000472226 - 13 106557048 106559657 22 AAGCCAAACUGUCGACAGCAAG bsj
ENSG00000134884:-:13:106557047:106559657 ENSG00000134884 ENST00000472226 - 13 106559648 106559857 210 GAUUUUAUACUCAUUUGAAUUUCUGUAUCAGUUAACAUCUUGGUAUCUGUCAUUUCCUCAAAUGUGACAUGGAAAUGAAUUCUGAAAAAAUCACUGAAUAAUAUCAGGCUCAAUGGCUUGAUAGACUUAAAACUAGUUUUGUUUAAAUUUAUAGUUUUAAAAGUAAAUACCUAACUUGUUUUUUUCACUUUGUUUGCUAGUCGACAGCAA ie_up
ENSG00000134884:-:13:106557047:106559657 ENSG00000134884 ENST00000472226 - 13 106556848 106557057 210 AGCCAAACUGGUAAGUGUAAAGCAUACAUGAAAAGUGUUUUGUAUUUUGCUUUAUUUCCUUUUUUCGGAUUUUGUGGAUUGAUUUUUGUGCCCUAUAAUUUGACUUAUUUUGGGGGGAUUCUCAGGACUAACUUUAAAGGCUUUUUGAGGCAAGGAUAGGAACAAUUGAGAUUUUUCCUUCCAAUCUGGACAGAACUCCAAAAUUUGCAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.0007662835 0.0001130379 2.761072 GCAUAA GCAUAA
CPEB4 20 821 0.0080459770 0.0011912456 2.755797 UUUUUU UUUUUU
DDX19B 20 821 0.0080459770 0.0011912456 2.755797 UUUUUU UUUUUU
EIF4A3 20 821 0.0080459770 0.0011912456 2.755797 UUUUUU UUUUUU
U2AF2 31 1477 0.0122605364 0.0021419234 2.517043 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 32 1553 0.0126436782 0.0022520629 2.489097 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 42 2062 0.0164750958 0.0029897078 2.462210 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
CPEB2 45 2261 0.0176245211 0.0032780993 2.426653 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPC 56 3471 0.0218390805 0.0050316361 2.117813 AUUUUU,CUUUUU,GGAUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS2 29 1858 0.0114942529 0.0026940701 2.093053 AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ELAVL3 45 2867 0.0176245211 0.0041563169 2.084206 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
SYNCRIP 22 1634 0.0088122605 0.0023694485 1.894961 AAAAAA,UUUUUU AAAAAA,UUUUUU
ELAVL4 67 5105 0.0260536398 0.0073996354 1.815959 AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
ELAVL1 72 5554 0.0279693487 0.0080503280 1.796727 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
KHDRBS3 44 3429 0.0172413793 0.0049707696 1.794334 AAAUAA,AAUAAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
ESRP1 1 156 0.0007662835 0.0002275250 1.751853 AGGGAU AGGGAU
ZFP36L2 15 1277 0.0061302682 0.0018520827 1.726802 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TIAL1 125 10182 0.0482758621 0.0147572438 1.709879 AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PPIE 221 18315 0.0850574713 0.0265436196 1.680073 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ELAVL2 221 18468 0.0850574713 0.0267653478 1.668072 AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 108 9206 0.0417624521 0.0133428208 1.646143 AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPU 22 1965 0.0088122605 0.0028491350 1.628988 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
ERI1 6 632 0.0026819923 0.0009173461 1.547767 UUCAGA,UUUCAG UUCAGA,UUUCAG
DAZAP1 64 5964 0.0249042146 0.0086445016 1.526535 AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAUA,AGUAUG,AGUUAA,AGUUUA,AGUUUG,GUAACG,UAGGAA,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
KHDRBS1 41 4064 0.0160919540 0.0058910141 1.449752 AUAAAA,AUUUAA,CAAAAU,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBM28 7 822 0.0030651341 0.0011926949 1.361725 AGUAGA,GAGUAG,UGUAGA,UGUAGG,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
CNOT4 2 314 0.0011494253 0.0004564992 1.332228 GACAGA GACAGA
HNRNPA1L2 2 314 0.0011494253 0.0004564992 1.332228 UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
QKI 25 2805 0.0099616858 0.0040664663 1.292614 AAUCAU,ACUAAC,ACUAAU,ACUCAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,UAAUCA,UCAUAU,UCUAAU,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM41 11 1318 0.0045977011 0.0019115000 1.266207 AUACAU,AUACUU,UACAUG,UACAUU,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
MSI1 24 2770 0.0095785441 0.0040157442 1.254139 AGGAAG,AGGAGG,AGGUAG,AGUAAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGUAA,UAGUUG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
HNRNPA0 3 453 0.0015325670 0.0006579386 1.219925 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
HNRNPD 24 2837 0.0095785441 0.0041128408 1.219671 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UAUUUA,UUAGGA,UUAGGG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ZCRB1 13 1605 0.0053639847 0.0023274215 1.204573 AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GGAUUA,GGUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
A1CF 13 1642 0.0053639847 0.0023810421 1.171712 AGUAUA,AUAAUU,AUCAGU,UAAUUA,UAAUUG,UGAUCA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PUM2 15 1890 0.0061302682 0.0027404447 1.161540 GUAAAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UAGAUA,UAUAUA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
SRSF4 30 3740 0.0118773946 0.0054214720 1.131462 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS1 3 497 0.0015325670 0.0007217036 1.086472 AUAUAC,GAUAUA,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
NONO 11 1498 0.0045977011 0.0021723567 1.081652 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
FUS 28 3648 0.0111111111 0.0052881452 1.071169 AAAAAA,CGGUGG,GGGUGG,UGGUGA,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
NOVA2 30 4013 0.0118773946 0.0058171047 1.029845 AGCACC,AGUCAU,CCUAGA,CUAGAU,GAGACA,GAGUCA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
PTBP1 128 16854 0.0494252874 0.0244263326 1.016812 ACUUUC,ACUUUU,AUUUUC,AUUUUU,CAUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUUC,CUCUUU,CUUCCU,CUUCUU,CUUUCC,CUUUCU,CUUUUU,GCUGUG,GUCUUU,UACUUU,UAUUUU,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
CSTF2 14 1967 0.0057471264 0.0028520334 1.010850 GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM6 7 1054 0.0030651341 0.0015289102 1.003447 AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA

RBP on BSJ (Exon Only)

Plot

No results under this category.

Spreadsheet

No results under this category.

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
CNOT4 1 65 0.004761905 0.0003325272 3.839994 GACAGA GACAGA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 2 263 0.007142857 0.0013301088 2.424957 AACAUC,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AAUUUA AAUUUA,AGAUAU,AGUAGG
HNRNPM 1 222 0.004761905 0.0011235389 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
G3BP2 3 490 0.009523810 0.0024738009 1.944809 AGGAUA,GGAUAG,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
RALY 8 1117 0.021428571 0.0056328094 1.927609 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPC 15 2006 0.038095238 0.0101118501 1.913564 AUUUUU,CUUUUU,GCAUAC,GGAUUC,GGGGGG,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ZCRB1 4 666 0.011904762 0.0033605401 1.824774 ACUUAA,GACUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
U2AF2 7 1071 0.019047619 0.0054010480 1.818299 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
HNRNPCL1 9 1381 0.023809524 0.0069629182 1.773775 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
ELAVL1 22 3309 0.054761905 0.0166767432 1.715335 AUUUAU,UAGUUU,UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUGAUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
CSTF2 6 1022 0.016666667 0.0051541717 1.693153 GUGUUU,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
TIAL1 35 5597 0.085714286 0.0282043531 1.603618 AAAUUU,AGUUUU,AUUUUA,AUUUUG,AUUUUU,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TIA1 32 5140 0.078571429 0.0259018541 1.600949 AUUUUG,AUUUUU,CUUUUU,GUUUUA,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCG,UUUUGG,UUUUGU,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
CPEB2 8 1487 0.021428571 0.0074969770 1.515155 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UACAUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SSB 2 505 0.007142857 0.0025493753 1.486358 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
CPEB4 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
DDX19B 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
EIF4A3 3 691 0.009523810 0.0034864974 1.449760 UUUUUU UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ELAVL3 10 1928 0.026190476 0.0097188634 1.430183 AUUUAU,AUUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUAAC,ACUCAU,ACUUAU,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ELAVL4 15 2916 0.038095238 0.0146966949 1.374119 AAAAAA,AUUUAU,GUAUCU,UAUUUU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
NONO 1 364 0.004761905 0.0018389762 1.372636 AGGAAC AGAGGA,AGGAAC,GAGAGG,GAGGAA
ENOX1 3 756 0.009523810 0.0038139863 1.320239 CAUACA,GGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPU 5 1136 0.014285714 0.0057285369 1.318335 AAAAAA,GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PUM2 3 764 0.009523810 0.0038542926 1.305073 GUAAAU,UAAAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 CAAAAU,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,AUCAGU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TARDBP 4 1034 0.011904762 0.0052146312 1.190902 GUUUUG,UUGUGC,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
HNRNPD 6 1488 0.016666667 0.0075020153 1.151615 AAAAAA,AAUUUA,AUUUAU,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
ELAVL2 45 9826 0.109523810 0.0495112858 1.145415 AAUUUA,AAUUUG,AUUUAU,AUUUUA,AUUUUG,AUUUUU,CUUUAA,CUUUUU,GAUUUU,GUUUUA,GUUUUU,UAAUUU,UAUACU,UAUUUU,UCAUUU,UGAUUU,UGUAUU,UUAUAC,UUAUUU,UUGAUU,UUGUAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
SF1 5 1294 0.014285714 0.0065245869 1.130615 ACUAAC,ACUUAU,CACUGA,GACUAA,UAUACU ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
IGF2BP2 9 2163 0.023809524 0.0109028617 1.126832 AAAAUC,AAAUAC,AAAUCA,CAUACA,CCAAAC,CCAAUC,GAACUC,GAAUUC,GCAUAC AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
RBM4 4 1094 0.011904762 0.0055169287 1.109602 CCUUCC,UCCUUC,UUCCUU CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AAAAAA,AAUUUA,AGGAUA,AGUAAA,AGUUAA,GGGGGG,UAGGAA,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 AAAAAA,AAAGUG AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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