ENSG00000008277:+:7:87964633:87978412

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000008277:+:7:87964633:87978412 ENSG00000008277 MSTRG.30194.4 + 7 87964634 87978412 128 AUUCAGAUGUUUUUGAAGUCAGAAUCCCAGAAGACCAUAUACCAGAUACAGUUGACUCAUGUUGACCAAGCAAGCUUCCAGGUUGAUGCCUUUGGAACGUCAUUCAUUCUCGAUGUCGUGCUAAAUCAAUUCAGAUGUUUUUGAAGUCAGAAUCCCAGAAGACCAUAUACCAGAUACA circ
ENSG00000008277:+:7:87964633:87978412 ENSG00000008277 MSTRG.30194.4 + 7 87964634 87978412 22 GUGCUAAAUCAAUUCAGAUGUU bsj
ENSG00000008277:+:7:87964633:87978412 ENSG00000008277 MSTRG.30194.4 + 7 87964434 87964643 210 UUAGGUGACAAGAUUGAUCUUUUUUUAUCACAGGGGCUAAUAGUGACUAGCUCCAAUAAAUAAUAGAAGUAUAAAUAAAAUUAAUUUCUAGAGUCUCUUUUAUUACCUUUGUCUAACAGAAUAAUUUGAUUAUUUUUCAACCCCUUAGGUUUUUUAUUAGAACGUGUUUGAAAAAUUGUACUCAUUUAAUUUUUUUUUAGAUUCAGAUGU ie_up
ENSG00000008277:+:7:87964633:87978412 ENSG00000008277 MSTRG.30194.4 + 7 87978403 87978612 210 UGCUAAAUCAGUAAGUGUUGAGUUGCACUUGCUUUUGUCAGAUACACAUUGAAUCCACUUUAUUUUCCACUUGUAAAGUUUUUUCUUACUAUAUUUUACUUUGUCUUCCUAUACCGGUUAAAUACUACAUUUUAAACUAUACUUAUUUACUGUAGGUUAUAAAGUCUGGCAGAUAACAAGAAAUAUAUAUUCAUUUGAAAUUGAGCACCU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMS1 1 497 0.0156250 0.0007217036 4.436306 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
ERI1 1 632 0.0156250 0.0009173461 4.090246 UUCAGA UUCAGA,UUUCAG
TUT1 1 678 0.0156250 0.0009840095 3.989040 AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
EIF4B 1 1179 0.0156250 0.0017100607 3.191737 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
PABPN1 1 1222 0.0156250 0.0017723764 3.140099 AGAAGA AAAAGA,AGAAGA
SNRNP70 1 1237 0.0156250 0.0017941145 3.122512 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
SSB 1 1260 0.0156250 0.0018274462 3.095955 UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
RBMS3 1 1283 0.0156250 0.0018607779 3.069878 CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
NOVA1 5 3872 0.0468750 0.0056127669 3.062035 AUUCAU,CAUUCA,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
RALY 1 1553 0.0156250 0.0022520629 2.794537 UUUUUG UUUUUC,UUUUUG,UUUUUU
CSTF2 1 1967 0.0156250 0.0028520334 2.453793 UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
HNRNPCL1 1 2062 0.0156250 0.0029897078 2.385780 UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
IGF2BP3 3 4815 0.0312500 0.0069793662 2.162688 AAAUCA,AAUUCA,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA
QKI 1 2805 0.0156250 0.0040664663 1.942009 ACUCAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBM46 2 4554 0.0234375 0.0066011240 1.828035 AAUCAA,AUCAAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
ENOX1 1 3195 0.0156250 0.0046316558 1.754256 AUACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
IGF2BP2 4 8408 0.0390625 0.0121863560 1.680517 AAAUCA,AAUUCA,CAAUUC,CAUUCA AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC
HNRNPC 1 3471 0.0156250 0.0050316361 1.634757 UUUUUG AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 2 5554 0.0234375 0.0080503280 1.541699 UGUUUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
YTHDC1 2 5576 0.0234375 0.0080822104 1.535997 UCGUGC,UGAUGC GAAUAC,GAAUGC,GACUAC,GACUGC,GAGUAC,GAGUGC,GCAUAC,GCAUGC,GCCUAC,GCCUGC,GCGUAC,GCGUGC,GGAUAC,GGAUGC,GGCUAC,GGCUGC,GGGUAC,GGGUGC,UAAUAC,UAAUGC,UACUAC,UACUGC,UAGUAC,UAGUGC,UCAUAC,UCAUGC,UCCUAC,UCCUGC,UCGUAC,UCGUGC,UGAUAC,UGAUGC,UGCUAC,UGCUGC,UGGUAC,UGGUGC
SRSF4 1 3740 0.0156250 0.0054214720 1.527100 AGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
PUM1 2 5823 0.0234375 0.0084401638 1.473476 CAGAAU,CCAGAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
KHDRBS1 1 4064 0.0156250 0.0058910141 1.407268 CUAAAU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
RBMX 1 4925 0.0156250 0.0071387787 1.130107 AUCCCA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
SF1 1 4931 0.0156250 0.0071474739 1.128351 UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SNRNP70 1 7 0.09090909 0.0005239717 7.438792 AAUCAA AAUCAA,AUUCAA,GUUCAA,UUCAAG
RBM46 2 14 0.13636364 0.0009824469 7.116864 AAUCAA,AUCAAU AAUCAA,AAUGAU,AUCAAA,AUCAAU,AUGAAG,AUGAUG,AUGAUU,GAUCAU,GAUGAA,GAUGAU
IGF2BP3 1 21 0.09090909 0.0014409222 5.979360 AAUUCA AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAUCA,CACUCA,CAUACA,CAUUCA
IGF2BP2 2 34 0.13636364 0.0022923762 5.894471 AAUUCA,CAAUUC AAAAUC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACUCA,ACAAAC,ACAAUC,ACACUC,ACAUAC,CAAAAC,CAAUAC,CAAUCA,CAAUUC,CACUCA,CAUACA,CAUUCA,CCAUAC,CCAUUC,GAAAAC,GAACAC,GAAUAC,GAAUUC
PCBP2 1 26 0.09090909 0.0017684045 5.683904 AAUUCA AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,AUUAAA,CCAUUC,CCCCCU,CCCUCC,CCCUUA,CCUCCC,CUCCCU,CUUCCA,UAACCC,UUAGAG,UUAGGA,UUAGGG
PCBP1 1 35 0.09090909 0.0023578727 5.268867 AAUUCA AAAAAA,AAACCA,AAAUUA,AAAUUC,AAUUAA,ACCAAA,ACCCUC,AUUAAA,CAAACC,CAUACC,CCAACC,CCACCC,CCAUAC,CCAUUC,CCCACC,CCCCAC,CCCUCC,CCCUUA,CCUCCC,CCUCUU,UUAGAG,UUAGGA,UUAGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 2 95 0.007142857 0.0004836759 3.884389 ACAAGA ACAAGA,CAAGAC
AKAP1 3 221 0.009523810 0.0011185006 3.089973 AUAUAU,UAUAUA AUAUAU,UAUAUA
TUT1 3 230 0.009523810 0.0011638452 3.032640 AAAUAC,AAUACU,AGAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CPEB4 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
DDX19B 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
EIF4A3 8 691 0.021428571 0.0034864974 2.619685 UUUUUU UUUUUU
KHDRBS3 19 1646 0.047619048 0.0082980653 2.520692 AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAG,UAAAUA,UUAAAC,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
A1CF 6 598 0.016666667 0.0030179363 2.465331 AGUAUA,AUAAUU,AUCAGU,UCAGUA,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
KHDRBS2 11 1051 0.028571429 0.0053002821 2.430432 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
U2AF2 11 1071 0.028571429 0.0054010480 2.403262 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
ELAVL3 20 1928 0.050000000 0.0097188634 2.363069 AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBMS3 5 562 0.014285714 0.0028365578 2.332360 AAUAUA,AUAUAU,CUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
RBM6 1 191 0.004761905 0.0009673519 2.299426 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
ZFP36L2 7 774 0.019047619 0.0039046755 2.286336 UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM41 4 502 0.011904762 0.0025342604 2.231902 AUACUU,UACAUU,UACUUU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RALY 10 1117 0.026190476 0.0056328094 2.217116 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.0011033857 2.109602 CUGUAG CCUGUA,CGCCUG,CUGUAG,GCCUGU
CPEB2 12 1487 0.030952381 0.0074969770 2.045670 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
HNRNPCL1 11 1381 0.028571429 0.0069629182 2.036809 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
SYNCRIP 8 1041 0.021428571 0.0052498992 2.029174 UUUUUU AAAAAA,UUUUUU
ELAVL4 24 2916 0.059523810 0.0146966949 2.017975 UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPC 16 2006 0.040476190 0.0101118501 2.001027 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA1 11 1428 0.028571429 0.0071997179 1.988561 AGCACC,AUUCAU,UUCAUU,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PPIE 74 9262 0.178571429 0.0466696896 1.935943 AAAAAU,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAUAAA,AAUAAU,AAUAUA,AAUUAA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAU,AUAUUU,AUUAAU,AUUAUU,AUUUAA,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAUUU,UAUAAA,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UUAAAU,UUAAUU,UUAUAA,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
HNRNPU 8 1136 0.021428571 0.0057285369 1.903297 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PUM2 5 764 0.014285714 0.0038542926 1.890035 UAAAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
KHDRBS1 14 1945 0.035714286 0.0098045143 1.864983 AUAAAA,AUUUAA,AUUUAC,CUAAAU,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
TIAL1 41 5597 0.100000000 0.0282043531 1.826010 AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAACUA,AAUACU,AUACUA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
TIA1 35 5140 0.085714286 0.0259018541 1.726480 AUUUUC,AUUUUU,CUUUUA,CUUUUG,CUUUUU,GUUUUU,UAUUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA2 9 1434 0.023809524 0.0072299476 1.719482 AGCACC,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
SF1 8 1294 0.021428571 0.0065245869 1.715577 ACUAGC,ACUUAU,AGUAAG,AUACUA,CUAACA,UAACAA,UAUACU,UGCUAA ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
ELAVL2 67 9826 0.161904762 0.0495112858 1.709316 AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUUA,AUUUUC,AUUUUU,CAUUUU,CUUUUA,CUUUUU,GUUUUU,UAAUUU,UACUUU,UAUACU,UAUAUA,UAUAUU,UAUUUA,UAUUUU,UCAUUU,UCUUUU,UUAAUU,UUACUU,UUAUUU,UUCAUU,UUGAUU,UUUAAU,UUUACU,UUUAUU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL1 19 3309 0.047619048 0.0166767432 1.513701 UAUUUA,UAUUUU,UUAUUU,UUGAUU,UUUAUU,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
PUM1 12 2172 0.030952381 0.0109482064 1.499356 AAUUGU,AGAUAA,AUUGUA,CAGAAU,CUUGUA,UAAAUA,UAUAUA,UGUAAA,UUGUAC,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
RBM28 1 340 0.004761905 0.0017180572 1.470761 UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
QKI 4 904 0.011904762 0.0045596534 1.384543 ACUCAU,ACUUAU,CUAACA,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 UAUUUA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
FUS 8 1711 0.021428571 0.0086255542 1.312847 UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
DAZAP1 13 2878 0.033333333 0.0145052398 1.200391 AGGUUA,AGUAAG,AGUAUA,UAGGUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AAUUAA,AUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
AGO2 2 677 0.007142857 0.0034159613 1.064210 UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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