ENSG00000113558:-:5:134157706:134167243

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000113558:-:5:134157706:134167243 ENSG00000113558 MSTRG.26934.1 - 5 134157707 134167243 421 AUUUGGGAAUGGAUGAUGAAGGAGAUGAUGACCCAGUUCCUCUACCAAAUGUGAAUGCAGCAAUAUUAAAAAAGGUCAUUCAGUGGUGCACCCACCACAAGGAUGACCCUCCUCCUCCUGAAGAUGAUGAGAACAAAGAAAAGCGAACAGAUGAUAUCCCUGUUUGGGACCAAGAAUUCCUGAAAGUUGACCAAGGAACACUUUUUGAACUCAUUCUGGCUGCAAACUACUUAGACAUCAAAGGUUUGCUUGAUGUUACAUGCAAGACUGUUGCCAAUAUGAUCAAGGGGAAAACUCCUGAGGAGAUUCGCAAGACCUUCAAUAUCAAAAAUGACUUUACUGAAGAGGAGGAAGCCCAGGUACGCAAAGAGAACCAGUGGUGUGAAGAGAAGUGAAAUGUUGUGCCUGACACUGUAACACUAUUUGGGAAUGGAUGAUGAAGGAGAUGAUGACCCAGUUCCUCUACCAAAU circ
ENSG00000113558:-:5:134157706:134167243 ENSG00000113558 MSTRG.26934.1 - 5 134157707 134167243 22 ACUGUAACACUAUUUGGGAAUG bsj
ENSG00000113558:-:5:134157706:134167243 ENSG00000113558 MSTRG.26934.1 - 5 134167234 134167443 210 CCAGGAAACAAGUCUACAUGUUUAGUGCAAGACACAGCCAUCCAUUUUUUUUCCCAAUAUGUUUAAUCUGUGGUUGGUUGAAUCCACAGAUGUAGAACUCAUGGAUAUGGGGGCUGACUCUUAUGUUUUGAGACAUAGCCUGGUUGGUAUAAGUAUUAUAAUGGAAUUAGGAAAUAGAAACUUUCUUCUGGUUUUCUUAGAUUUGGGAAU ie_up
ENSG00000113558:-:5:134157706:134167243 ENSG00000113558 MSTRG.26934.1 - 5 134157507 134157716 210 CUGUAACACUGUAAGGAUUGUUCCAAAUACUAGUUGCACUGCUCUGUUUAUAAUUGUUAAUAUUAGACAAACAGUAGACAAAUGCAGCAGCAAGUCAAUUGUAUUAGCAGAAUAUUGUCCUCAUUGCAUGUGUAGUUUGAGCACAGAUCCCAAACCUUACGGCCAAGUUUCUUCUAGUAUGAUGGAAAGUUUCUUUUUUCUUUGCUCUGA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 2 489 0.007125891 0.0007101099 3.326956 CAAGAC ACAAGA,CAAGAC
RBM42 1 407 0.004750594 0.0005912752 3.006206 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
RBM46 14 4554 0.035629454 0.0066011240 2.432287 AUCAAA,AUCAAG,AUGAAG,AUGAUA,AUGAUG,GAUCAA,GAUGAA,GAUGAU AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPM 2 999 0.007125891 0.0014492040 2.297810 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
NONO 3 1498 0.009501188 0.0021723567 2.128847 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
IGHMBP2 1 813 0.004750594 0.0011796520 2.009747 AAAAAA AAAAAA
G3BP2 3 1644 0.009501188 0.0023839405 1.994760 AGGAUG,GGAUGA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SNRNP70 2 1237 0.007125891 0.0017941145 1.989798 AUCAAG,GAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.004750594 0.0012057377 1.978192 GCACCC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPC4 2 1251 0.007125891 0.0018144033 1.973575 AAAAAA,AAAAAG AAAAAA,AAAAAG
ACO1 2 1283 0.007125891 0.0018607779 1.937165 CAGUGG CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPA3 4 2140 0.011876485 0.0031027457 1.936491 AAGGAG,CAAGGA,CCAAGG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 4 2150 0.011876485 0.0031172377 1.929768 GGGAAA,GGGAAU,GGGGAA,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
RBM41 2 1318 0.007125891 0.0019115000 1.898365 UACAUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
TARDBP 5 2654 0.014251781 0.0038476365 1.889098 GAAUGG,GUGAAU,GUUGUG,UGAAUG,UUGUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
HNRNPAB 3 1782 0.009501188 0.0025839306 1.878541 ACAAAG,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ZRANB2 6 3173 0.016627078 0.0045997733 1.853900 AAAGGU,AGGUAC,AGGUUU,GUGGUG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RBM3 3 2152 0.009501188 0.0031201361 1.606499 AAAACU,AAACUA,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
RBMX 8 4925 0.021377672 0.0071387787 1.582356 AAGGAA,ACCAAA,AGGAAG,AUCAAA,GAAGGA,GUAACA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF1 3 2391 0.009501188 0.0034664959 1.454630 GUUGUG,UGUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
HNRNPA2B1 13 8607 0.033254157 0.0124747476 1.414524 AAGGAA,AAGGAG,AAGGGG,AGGAAC,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,UAGACA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
PABPC3 1 1234 0.004750594 0.0017897669 1.408336 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SRSF10 21 13860 0.052256532 0.0200874160 1.379319 AAAGAA,AAAGAG,AAGAAA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGG,ACAAAG,AGAGAA,AGAGGA,CAAAGA,GAGAAC,GAGAAG,GAGGAA,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SSB 1 1260 0.004750594 0.0018274462 1.378279 CUGUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
SART3 3 2634 0.009501188 0.0038186524 1.315044 AAAAAA,AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPCL1 2 2062 0.007125891 0.0029897078 1.253066 CUUUUU,UUUUUG AUUUUU,CUUUUU,UUUUUG,UUUUUU
LIN28A 5 4315 0.014251781 0.0062547643 1.188115 AGGAGA,GGAGAU,GGAGGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
YBX2 1 1480 0.004750594 0.0021462711 1.146276 ACAUCA AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
HNRNPA1 23 18070 0.057007126 0.0261885646 1.122205 AAAAAA,AAAGAG,AAGAGG,AAGGAG,AGAGGA,AGGAAG,AGUGAA,AGUGGU,CAAAGA,CAAGGA,CCAAGG,GAGGAA,GAGGAG,GGAGGA,GUACGC,GUGGUG,UAGACA,UGGUGC AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
TRA2A 8 6871 0.021377672 0.0099589296 1.102042 AAAGAA,AAGAAA,AAGAGG,AGAGGA,AGGAAG,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
RBM5 8 6879 0.021377672 0.0099705232 1.100364 AAAAAA,AAGGAA,AAGGAG,AAGGGG,CAAGGA,CAAGGG,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
RALY 1 1553 0.004750594 0.0022520629 1.076861 UUUUUG UUUUUC,UUUUUG,UUUUUU
PABPC5 2 2400 0.007125891 0.0034795387 1.034174 AGAAAA,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
SYNCRIP 1 1634 0.004750594 0.0023694485 1.003557 AAAAAA AAAAAA,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
QKI 1 6 0.09090909 0.0004584752 7.631437 ACACUA AUCUAA,UAAUCA,UCUAAU
ELAVL2 1 28 0.09090909 0.0018993974 5.580811 UAUUUG AAUUUA,AAUUUU,AUAUUU,AUUUAA,AUUUUG,CUUUCU,GAUUUU,GUAUUG,GUUUUU,UACUUU,UAGUUA,UAUAUA,UAUAUU,UAUGUU,UAUUGA,UAUUUU,UGUAUU,UUAAGU,UUACUU,UUAGUU,UUAUUG,UUUACU,UUUAGU,UUUCUU,UUUUAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 1 95 0.004761905 0.0004836759 3.299426 CAAGAC ACAAGA,CAAGAC
HNRNPAB 5 351 0.014285714 0.0017734784 3.009919 AAGACA,AGACAA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
RBFOX2 1 124 0.004761905 0.0006297864 2.918604 UGCAUG UGACUG,UGCAUG
RBM6 2 191 0.007142857 0.0009673519 2.884389 AAUCCA,CAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
RBM28 4 340 0.011904762 0.0017180572 2.792689 AGUAGA,GUGUAG,UGUAGA,UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
TUT1 2 230 0.007142857 0.0011638452 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBFOX1 2 287 0.007142857 0.0014510278 2.299426 GCAUGU,UGCAUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
ZNF638 4 646 0.011904762 0.0032597743 1.868695 GGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
U2AF2 7 1071 0.019047619 0.0054010480 1.818299 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAUACU,AUACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
CPEB4 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.0034864974 1.771688 UUUUUU UUUUUU
SNRPB2 1 288 0.004761905 0.0014560661 1.709463 AUUGCA AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
FXR2 4 730 0.011904762 0.0036829907 1.692589 AGACAA,GACAAA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
RALY 6 1117 0.016666667 0.0056328094 1.565039 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
G3BP2 2 490 0.007142857 0.0024738009 1.529772 AGGAUU,GGAUUG AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
SSB 2 505 0.007142857 0.0025493753 1.486358 CUGUUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
CPEB2 7 1487 0.019047619 0.0074969770 1.345230 AUUUUU,CAUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACAAAC,CAAACA,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AAGACA,UAGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
HNRNPCL1 6 1381 0.016666667 0.0069629182 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UAAUUG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPC 9 2006 0.023809524 0.0101118501 1.235492 AUUUUU,CUUUUU,GGAUAU,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
NOVA2 6 1434 0.016666667 0.0072299476 1.204908 AGACAU,GAGACA,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
SYNCRIP 4 1041 0.011904762 0.0052498992 1.181177 UUUUUU AAAAAA,UUUUUU
KHDRBS2 4 1051 0.011904762 0.0053002821 1.167398 UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
RC3H1 2 631 0.007142857 0.0031841999 1.165570 CUUCUG,UCUGUG CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
SF1 5 1294 0.014285714 0.0065245869 1.130615 AUACUA,CACAGA,GCUGAC,UACUAG ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
PUM1 9 2172 0.023809524 0.0109482064 1.120844 AAUAUU,AAUUGU,AUUGUA,CAGAAU,UAAUAU,UGUAGA,UUUAAU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
PABPC1 5 1321 0.014285714 0.0066606207 1.100845 ACAAAC,ACAAAU,CAAACA,CAAACC,CAAAUA AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
CELF2 3 881 0.009523810 0.0044437727 1.099754 AUGUGU,UAUGUU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 GAAUUA,GUUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPU 4 1136 0.011904762 0.0057285369 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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