ENSG00000137269:+:6:53878992:53913969

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000137269:+:6:53878992:53913969 ENSG00000137269 ENST00000370888 + 6 53878993 53913969 829 AGAUUCCUGAAAUUCCAGAAAGCAUUUCAUUCUGUAAAGCACUGCAGGUAGCUGACUUCAGCGGAAACCCACUGACUAGGUUGCCAGAAAGCUUUCCUGAAUUACAGAAUUUAACAUGUCUUUCUGUAAAUGACAUCUCACUACAGUCUCUACCUGAAAAUAUUGGCAAUCUUUAUAACCUGGCUUCACUGGAACUGAGAGAGAAUCUUCUUACAUAUCUUCCUGACUCUCUUACCCAGCUGCGAAGACUAGAAGAACUUGAUUUAGGAAACAAUGAAAUAUAUAAUUUGCCAGAAUCAAUUGGAGCCCUCUUACAUCUAAAAGAUCUCUGGUUGGAUGGAAAUCAACUGUCAGAAUUACCUCAGGAAAUAGGAAAUCUGAAGAACCUGCUGUGUUUAGAUGUCUCUGAAAACAGGUUGGAAAGACUUCCUGAAGAAAUCAGUGGCCUGACUUCAUUAACGGAUUUAGUCAUUUCCCAGAACUUAUUAGAAACGAUUCCGGAUGGCAUUGGAAAACUAAAGAAACUGUCAAUCUUGAAGGUGGAUCAGAAUAGACUCACACAGUUGCCUGAAGCAGUUGGGGAAUGUGAAAGUCUCACUGAGUUAGUUCUUACAGAAAAUCAGCUCCUGACCCUGCCUAAAAGCAUUGGAAAACUAAAGAAGUUGAGCAACUUGAAUGCAGACAGAAAUAAAUUAGUGUCCUUACCAAAAGAGAUCGGCGGGUGCUGCAGCCUCACUGUGUUCUGUGUACGUGACAACAGACUAACUCGGAUACCUGCAGAGGUGUCACAGGCAACAGAACUUCAUGUCCUGGAUGUGGCAGGGAACAGAGAUUCCUGAAAUUCCAGAAAGCAUUUCAUUCUGUAAAGCACUGCAGGUA circ
ENSG00000137269:+:6:53878992:53913969 ENSG00000137269 ENST00000370888 + 6 53878993 53913969 22 GCAGGGAACAGAGAUUCCUGAA bsj
ENSG00000137269:+:6:53878992:53913969 ENSG00000137269 ENST00000370888 + 6 53878793 53879002 210 UCUUUAAUGUGCUUCUGUUGAGAAUAUAACUUAUAUUAGGAAAGCAAAUAUAAAUAUAUUAAAAUACUUUAUAAGUCUAGGUCAUGUUUGAAUGGAGGUAGGAAUUUCCAGAUAUUCUCUUGUGAGUGUGAUCCAUCUUGAGAGUGAUGAAAACUGUUAAUAAUGGUGGCAAAUUAUAGACAUUUUCUCUACUCCUGCAGAGAUUCCUGA ie_up
ENSG00000137269:+:6:53878992:53913969 ENSG00000137269 ENST00000370888 + 6 53913960 53914169 210 CAGGGAACAGGUAAGCCUGUUGUAGUUUGCUUUGCUUGAGGGAAACAAAUAUACAUACAUCCCAAUCUUGGCAGUGCAUCUUCAAAUUUUUGUCUUUGCUUUAUCUUACAGAAUAUAAUCCUGAUUUUUCAAAUGACCUAGGCCUCAGGGAGUUCCUUCAUAGGGGGGCUAGAGUGCUUGAGCCCAAUGGAGCAGAGAAGGUCAGGGAAA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
NXF1 2 286 0.003618818 0.0004159215 3.121135 AACCUG AACCUG
PTBP2 1 267 0.002412545 0.0003883867 2.634990 CUCUCU CUCUCU
RBM42 2 407 0.003618818 0.0005912752 2.613617 AACUAA AACUAA,AACUAC,ACUAAG,ACUACG
AKAP1 2 426 0.003618818 0.0006188101 2.547950 AUAUAU,UAUAUA AUAUAU,UAUAUA
MATR3 4 739 0.006031363 0.0010724109 2.491626 AAUCUU,AUCUUG AAUCUU,AUCUUA,AUCUUG,CAUCUU
CNOT4 1 314 0.002412545 0.0004564992 2.401872 GACAGA GACAGA
EIF4B 6 1179 0.008443908 0.0017100607 2.303863 CUCGGA,GUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
RBM3 11 2152 0.014475271 0.0031201361 2.213910 AAAACU,AAACGA,AAACUA,AAGACU,AGACUA,GAAACG,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
FXR1 1 411 0.002412545 0.0005970720 2.014579 AUGACA ACGACA,ACGACG,AUGACA,AUGACG
HNRNPA0 1 453 0.002412545 0.0006579386 1.874531 AAUUUA AAUUUA,AGAUAU,AGUAGG
PABPC5 9 2400 0.012062726 0.0034795387 1.793588 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PABPC3 4 1234 0.006031363 0.0017897669 1.752712 AAAACA,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
RBMS1 1 497 0.002412545 0.0007217036 1.741078 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
ZCRB1 5 1605 0.007237636 0.0023274215 1.636786 AUUUAA,GAAUUA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
PUM2 6 1890 0.008443908 0.0027404447 1.623501 GUAAAU,UACAUA,UACAUC,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
AGO1 1 548 0.002412545 0.0007956130 1.600417 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
RC3H1 5 1786 0.007237636 0.0025897275 1.482718 UCUGUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
NELFE 9 3028 0.012062726 0.0043896388 1.458382 CUCUCU,CUCUGG,CUGGCU,CUGGUU,GUCUCU,UCUCUG,UCUGGU CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
PABPN1 3 1222 0.004825090 0.0017723764 1.444871 AAAAGA,AGAAGA AAAAGA,AGAAGA
RBMS3 3 1283 0.004825090 0.0018607779 1.374650 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
PUM1 17 5823 0.021712907 0.0084401638 1.363210 AAUAUU,AGAAUU,CAGAAU,CCAGAA,GUAAAU,UACAUA,UACAUC,UAUAUA,UGUAAA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SRSF11 1 688 0.002412545 0.0009985015 1.272719 AAGAAG AAGAAG
CELF5 3 1415 0.004825090 0.0020520728 1.233474 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
ZNF638 4 1773 0.006031363 0.0025708878 1.230217 GGUUGG,GUUCUU,UGUUCU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
YBX2 3 1480 0.004825090 0.0021462711 1.168724 ACAACA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
MSI1 6 2770 0.008443908 0.0040157442 1.072244 AGGUAG,AGGUGG,AGUUAG,AGUUGG,UAGGAA AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
SNRPA 17 7380 0.021712907 0.0106965744 1.021404 ACCUGC,AGCAGU,AUACCU,AUUCCU,CCUGCU,GAUACC,GAUUCC,UACCUG,UUACCU,UUCCUG,UUUCCU ACCUGC,AGCAGU,AGGAGA,AGUAGG,AGUAGU,AUACCU,AUGCAC,AUGCUG,AUUCCU,AUUGCA,CAGUAG,CCUGCU,CUGCUA,GAGCAG,GAUACC,GAUUCC,GCAGUA,GGAGAU,GGGUAU,GGUAUG,GUAGGC,GUAGGG,GUAGUC,GUAGUG,GUAUGC,GUUACC,GUUUCC,UACCUG,UAUGCU,UCCUGC,UGCACA,UGCACC,UGCACG,UUACCU,UUCCUG,UUGCAC,UUUCCU
A1CF 3 1642 0.004825090 0.0023810421 1.018963 AUAAUU,AUCAGU,GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
SF1 11 4931 0.014475271 0.0071474739 1.018085 ACAGAC,ACAGUC,ACUAAC,ACUGAC,ACUUAU,AUUAAC,CACUGA,GACUAA,GCUGAC,UGCUGC ACAGAC,ACAGUC,ACCGAC,ACGAAC,ACUAAC,ACUAAG,ACUAAU,ACUAGC,ACUGAC,ACUUAU,AGUAAC,AGUAAG,AUACUA,AUUAAC,CACAGA,CACCGA,CACUGA,CAGUCA,CGCUGA,CUAACA,GACUAA,GCUAAC,GCUGAC,GCUGCC,UAACAA,UACGAA,UACUAA,UACUAG,UACUGA,UAGUAA,UAUACU,UGCUAA,UGCUGA,UGCUGC
SNRNP70 2 1237 0.003618818 0.0017941145 1.012247 AAUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
IGF2BP1 1 831 0.002412545 0.0012057377 1.000640 AAGCAC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF3 3 61 0.1818182 0.004060781 5.484596 AGAGAU,CAGAGA,GAGAUU AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC
SRSF7 2 128 0.1363636 0.008449044 4.012527 AGAGAU,CAGAGA AAGGAC,AAGGCG,AAUGAU,ACGAAU,ACUACG,AGAAGA,AGAGAA,AGAGAC,AGAGAG,AGAGAU,AGAGGA,AGAUCA,AGAUCU,AGGAAG,AGGACA,AUAGAC,AUUGAC,AUUGAU,CAGAGA,CGAAUG,CUCUUC,CUGAGA,GAAGAA,GAAGGC,GAAUGA,GACAAA,GACGAC,GAGACU,GAGAGA,GAGAUC,GAGGAA,GAUAGA,GAUUGA,GGAAGG,GGACAA,GGACGA,UAGAGA,UCUUCA,UGAGAG,UGGACA
SRSF2 2 479 0.1363636 0.031438302 2.116864 AGAGAU,CAGAGA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.1363636 0.041000786 1.733736 ACAGAG,CAGAGA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
MATR3 6 216 0.016666667 0.001093309 3.930192 AAUCUU,AUCUUA,AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBMS3 7 562 0.019047619 0.002836558 2.747397 AAUAUA,AUAUAU,UAUAGA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
TUT1 2 230 0.007142857 0.001163845 2.617602 AAAUAC,AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
HNRNPA1L2 1 188 0.004761905 0.000952237 2.322146 AUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
AGO1 2 283 0.007142857 0.001430875 2.319604 AGGUAG,GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPA0 1 200 0.004761905 0.001012696 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBM41 4 502 0.011904762 0.002534260 2.231902 AUACAU,AUACUU,UACUUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBMS1 1 217 0.004761905 0.001098347 2.116204 AUAUAC AUAUAC,AUAUAG,GAUAUA,UAUAUA
SRP14 1 218 0.004761905 0.001103386 2.109602 GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
AKAP1 1 221 0.004761905 0.001118501 2.089973 AUAUAU AUAUAU,UAUAUA
RBM24 7 888 0.019047619 0.004479041 2.088349 AGAGUG,AGUGUG,GAGUGA,GAGUGU,GUGUGA,UGAGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
HNRNPM 1 222 0.004761905 0.001123539 2.083489 GGGGGG AAGGAA,GAAGGA,GGGGGG
PABPC3 1 310 0.004761905 0.001566909 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ACO1 1 325 0.004761905 0.001642483 1.535660 CAGUGC CAGUGA,CAGUGC,CAGUGG,CAGUGU
AGO2 3 677 0.009523810 0.003415961 1.479247 AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
RBM28 1 340 0.004761905 0.001718057 1.470761 UGUAGU AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBM3 2 541 0.007142857 0.002730754 1.387202 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
ENOX1 3 756 0.009523810 0.003813986 1.320239 CAUACA,UAGACA,UAUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 3 764 0.009523810 0.003854293 1.305073 UAAAUA,UACAUA,UACAUC GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
ZRANB2 6 1360 0.016666667 0.006857114 1.281292 AGGGAA,AGGUAA,AGGUAG,UGGUGG AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG
RC3H1 2 631 0.007142857 0.003184200 1.165570 CUUCUG,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
RBM5 10 2359 0.026190476 0.011890367 1.139249 AGGGAA,AGGGAG,AGGUAA,GAAGGU,GAGGGA,GGGGGG,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
QKI 3 904 0.009523810 0.004559653 1.062615 ACUUAU,CUACUC,UCUACU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PPIE 39 9262 0.095238095 0.046669690 1.029053 AAAAUA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUUAU,AAUUUU,AUAAAU,AUAUAA,AUAUAU,AUAUUA,AUUAAA,AUUAUA,AUUUUU,UAAAAU,UAAAUA,UAAUAA,UAUAAA,UAUAAU,UAUAUU,UAUUAA,UUAAAA,UUAAUA,UUAUAA,UUAUAU,UUUAAU,UUUAUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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