ENSG00000139746:-:13:79319534:79378907

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000139746:-:13:79319534:79378907 ENSG00000139746 MSTRG.8946.3 - 13 79319535 79378907 3967 CUGUGAUGCAGAUCCAUCCGCCCUAGCAAAAUAUGUUCUGGCUUUGGUAAAGAAAGACAAAAGUGAAAAAGAGUUAAAGGCAUUAUGUAUUGAUCAGCUGGAUGUAUUUCUUCAGAAAGAGACACAGAUAUUUGUGGAAAAACUUUUUGAUGCUGUGAAUACAAAGAGUUACCUACCUCCUCCAGAGCAGCCAUCAUCAGGAAGCCUGAAGGUAGAAUUUUUUCCACACCAAGAAAAAGAUAUAAAGAAGGAAGAGAUCACUAAGGAGGAAGAGCGAGAGAAGAAGUUUUCUAGAAGGCUAAAUCACAGUCCUCCCCAGUCAAGCUCCCGAUACAGGGAAAAUAGAAGCCGUGAUGAGAGGAAAAAAGAUGAUCGUUCUCGCAAAAGAGAUUAUGAUCGAAACCCUCCUCGAAGAGAUUCAUACAGAGACCGGUACAAUAGAAGACGAGGGCGGAGUCGCAGUUAUAGCAGGAGUCGAAGUCGAAGUUGGAGUAAAGAGAGGCUUCGUGAGAGGGACAGAGAUAGAAGCAGGACUAGAAGCAGAAGCAGAACACGAAGCAGGGAAAGGGAUCUGGUAAAACCUAAAUAUGACCUGGAUAGAACAGAUCCAUUAGAAAAUAAUUAUACUCCAGUCUCUUCGGUACCUAGUAUUUCAUCUGGCCACUACCCUGUACCUACUUUGAGCAGCACUAUUACAGUAAUUGCUCCUACUCAUCAUGGAAACAACACUACCGAAAGUUGGUCUGAAUUUCAUGAAGACCAAGUGGACCAUAACUCUUACGUAAGACCACCCAUGCCAAAGAAACGGUGUAGAGACUAUGAUGAAAAGGGUUUUUGUAUGAGAGGAGACAUGUGUCCUUUUGAUCAUGGAAGUGAUCCAGUAGUUGUAGAAGAUGUGAAUCUUCCUGGUAUGCUGCCUUUCCCAGCACAGCCUCCUGUUGUUGAAGGACCACCUCCUCCUGGACUCCCCCCACCUCCACCAAUUCUUACACCCCCACCUGUGAAUCUCAGGCCCCCAGUACCACCGCCAGGUCCAUUGCCACCCAGUCUCCCACCUGUUACAGGACCACCACCUCCACUUCCUCCUUUGCAGCCAUCUGGCAUGGAUGCUCCUCCAAACUCUGCAACCAGUUCUGUUCCUACUGUAGUAACAACUGGCAUUCAUCACCAGCCUCCUCCUGCUCCACCCUCUCUUUUUACUGCAGAUACAUAUGACACAGAUGGCUACAAUCCUGAAGCCCCAAGCAUAACAAACACUUCCAGACCUAUGUAUAGACACAGAGUGCAUGCACAAAGGCCCAACUUGAUAGGACUAACAUCAGGGGAUAUGGAUUUGCCACCCAGAGAAAAGCCUCCCAAUAAAAGCAGUAUGAGGAUAGUAGUGGACUCAGAAUCAAGGAAAAGAACCAUUGGUUCUGGAGAGCCUGGAGUUCCUACAAAGAAGACUUGGUUUGAUAAACCAAAUUUUAAUAGAACAAACAGCCCAGGCUUUCAGAAGAAGGUUCAAUUUGGAAAUGAAAAUACCAAGCUUGAACUUAGAAAAGUUCCUCCAGAAUUAAAUAAUAUCAGCAAACUUAAUGAACAUUUUAGUCGAUUUGGAACCUUGGUUAACUUACAGGUUGCUUAUAAUGGUGAUCCUGAAGGUGCCCUAAUCCAAUUUGCAACAUACGAAGAAGCAAAGAAAGCAAUAUCAAGUACGGAAGCAGUAUUAAACAAUCGCUUUAUUAAGGUUUAUUGGCACAGAGAAGGAAGCACCCAACAGUUACAAACUACUUCUCCAAAGGUAAUGCAGCCUUUAGUCCAGCAGCCCAUUUUGCCUGUUGUGAAGCAGUCAGUCAAAGAGCGGCUGGGUCCAGUACCUUCAAGUACUAUUGAACCUGCAGAAGCCCAGAGUGCCUCUUCAGACCUUCCUCAGGUGUUGUCUACAUCUACUGGCCUAACAAAAACAGUGUAUAAUCCAGCUGCUUUGAAGGCUGCACAGAAAACCUUACUUGUUUCCACCUCUGCAGUUGAUAAUAAUGAAGCACAGAAAAAAAAACAGGAGGCAUUGAAACUUCAGCAGGAUGUAAGGAAAAGGAAACAAGAAAUUUUAGAAAAGCACAUUGAAACACAGAAGAUGUUAAUUUCAAAACUGGAGAAAAACAAAACAAUGAAGUCUGAAGAUAAAGCAGAAAUAAUGAAAACUUUAGAGGUUUUGACAAAAAAUAUUACCAAGUUGAAAGAUGAGGUCAAAGCUGCUUCUCCUGGACGCUGUCUUCCAAAAAGUAUAAAAACCAAGACUCAGAUGCAGAAGGAAUUACUUGACACAGAACUGGAUUUAUAUAAGAAGAUGCAGGCUGGAGAAGAAGUCACUGAACUUAGGAGAAAGUAUACAGAAUUACAGCUGGAAGCUGCCAAACGAGGGAUUCUUUCAUCUGGUCGGGGCAGAGGAAUUCAUUCAAGAGGUCGAGGUGCAGUUCAUGGCCGAGGCAGGGGGCGAGGGCGAGGGCGAGGUGUGCCUGGUCAUGCUGUGGUGGAUCACCGUCCCAGGGCAUUGGAGAUUUCUGCAUUUACGGAGAGCGAUAGAGAAGAUCUUCUUCCUCAUUUUGCGCAAUAUGGUGAAAUUGAAGAUUGUCAGAUUGAUGAUUCCUCACUUCAUGCAGUAAUUACAUUCAAGACAAGAGCAGAAGCUGAAGCAGCUGCAGUUCAUGGAGCUCGUUUCAAAGGGCAAGAUCUAAAACUGGCAUGGAAUAAACCAGUAACUAAUAUUUCAGCUGUUGAAACAGAAGAAGUUGAGCCUGAUGAAGAAGAAUUUCAGGAAGAGUCUUUGGUGGAUGACUCAUUACUUCAAGAUGAUGAUGAAGAAGAAGAGGACAAUGAAUCUCGUUCUUGGAGAAGAUGAUUUGACUGAUCAUUGAUCUGCAUAUGCUAGAACUCUACCUGUGUUUCAUUAGUAUUAUCUAAUGUACUUUUACAUAUUUGUAAAAACAAUUUUUGGUAAAAUGUGAUGAAGAUGGAUUUCACAAAUAGACAAAAAAGAAGAAAACUACCUUCUGAUCUUGUAUUUUGAAAGAUUGAUGUUUGCAUUUUACUUCAGUAAACAAUUGCUAAAGACAUCACACUAGAAACAUAUGCAAUGUUUUUAUUACAUACUUCUACUGGACAUCACAGAAUUCUUUGGGUUCUUUGUAAUUUAAUGAAUAGGUCUGAAAACUUAUGACCAAUACUUGUUAUAACUUAGAGGACUUUGUUUUAUUCCAAAUAAGGAAUGAAUUUGCAUUUAAAAUCUUAAUGAAUGUUUUCAAAACUGAAUAGAUAACAUAGUACUCUAACUAAAGUCUCCAAGUUAUGUAUUAUAAUAUUACAUAGUAGUAUGCUUAGGCUUUACUAUGUAUUAGCCUUUUGUUGGACUGUGUAUGUAUUUUACCAUAUGGGUUUUAAUGAUAAUGGUGUAUGACUGCUUUACAUGAGUCCUUAUGCAUCCAGAUGUUAUAAUAAAGUGGAAUGGUCUCUUUAAAAAAAAAAAAGGAAAGAAAAGAGAAAAGCAAUGACAAAAAAAAAAAAAAAAAAAAAGCCAAGACAAUGUUCCUUGAUUUAAAAAAAAAAAGAAAAGAAAAAAGAAAAGAAAAAAAUUAAAAUAGACCAUUCCAGAUGGUGAUCUACCCUUCCCCCCAAUUAUCACAAAAGGAGCUAUAAUCACUAACUUAUUCUUAAUAAUAAUGGUUACUGGUACCCUUACAAUAAUGUACAAUCCAAUGUUUAAAAAUUAUACCACUUGAGUUUGGUUUGAUCCUAUAAAUUUUCAACAAAUGUCUUAAAAUUUAAAAGCAGGCUGAUUAGUUUGGAACCAGACUGCAAGUAGAGCUAACAUUUGGUGAAUAAGAAAACAUCACAUUACAUUUUGGAUGUAUGAAAGAAAACUUGACCAUUUGAAGAUAUAUGAAUAAAGAAAUGUACUAUAGAUACUACUUUAGGAAAACACUGUUUGCUGUGAUGCAGAUCCAUCCGCCCUAGCAAAAUAUGUUCUGGCUUUGGUAA circ
ENSG00000139746:-:13:79319534:79378907 ENSG00000139746 MSTRG.8946.3 - 13 79319535 79378907 22 AACACUGUUUGCUGUGAUGCAG bsj
ENSG00000139746:-:13:79319534:79378907 ENSG00000139746 MSTRG.8946.3 - 13 79378898 79379107 210 AAGAAAUAAAAUGGCUACACAUAGCAUUAAGGAGUGUUAGUAUAAAGAGAACUUAAAUUUCUUCAAGGUCCUCUGUGACCCGGGUGCUUUUUACAUGUAUUAACUCACUUAACUAUUAUUCUCACUAAUUCAGUUUGUAACUGGAAUUUGUAGAAUGUGCAGUUGGCUAAAUUUUCUUCAACAUUGGUUUUUUUCUUUAGCUGUGAUGCA ie_up
ENSG00000139746:-:13:79319534:79378907 ENSG00000139746 MSTRG.8946.3 - 13 79319335 79319544 210 ACACUGUUUGGUAAGUGUUCCAGUCUGAUAUUUUAAGUGUGUACUUCCUAUACUUGUAUAAAAAUCUUUGAUGUUUGCAACAAUACUGUGAUUUUUUUAAGUGGAUUUCUUUUGCAAGUGAACAUGAUCAUUGAAAGUUGAUAUGGCAGUUUCCAGGAAAUAAAUGCAUUCUUUGUAGAAUGGGGGUGGGAGAUUACAUAUUUAUAUUUU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
IGHMBP2 39 813 0.0100831863 0.0011796520 3.095518 AAAAAA AAAAAA
PABPC4 48 1251 0.0123519032 0.0018144033 2.767166 AAAAAA,AAAAAG AAAAAA,AAAAAG
SART3 77 2634 0.0196622133 0.0038186524 2.364290 AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
OAS1 1 77 0.0005041593 0.0001130379 2.157073 GCAUAA GCAUAA
SYNCRIP 40 1634 0.0103352659 0.0023694485 2.124952 AAAAAA,UUUUUU AAAAAA,UUUUUU
AGO2 43 1830 0.0110915049 0.0026534924 2.063491 AAAAAA,AAAGUG,UAAAGU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
PABPN1 26 1222 0.0068061507 0.0017723764 1.941154 AAAAGA,AGAAGA AAAAGA,AGAAGA
HNRNPU 42 1965 0.0108394253 0.0028491350 1.927692 AAAAAA,CCCCCC,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
PABPC1 94 4443 0.0239475674 0.0064402624 1.894688 AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAAUA,CUAACA,CUAAUA,CUAAUC,GAAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
PABPC3 23 1234 0.0060499118 0.0017897669 1.757142 AAAAAC,AAAACA,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ESRP1 2 156 0.0007562390 0.0002275250 1.732817 AGGGAU AGGGAU
HNRNPD 53 2837 0.0136123015 0.0041128408 1.726704 AAAAAA,AAUUUA,AGAUAU,AUUUAU,UUAGAG,UUAGGA,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
SRSF11 12 688 0.0032770355 0.0009985015 1.714555 AAGAAG AAGAAG
RBM41 22 1318 0.0057978321 0.0019115000 1.600808 AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
RBM42 5 407 0.0015124779 0.0005912752 1.355012 AACUAA,AACUAC,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
TRA2A 95 6871 0.0241996471 0.0099589296 1.280923 AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPAB 23 1782 0.0060499118 0.0025839306 1.227347 AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
PABPC5 31 2400 0.0080665490 0.0034795387 1.213056 AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2B 96 7329 0.0244517267 0.0106226650 1.202791 AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPA0 5 453 0.0015124779 0.0006579386 1.200889 AAUUUA,AGAUAU AAUUUA,AGAUAU,AGUAGG
FUS 47 3648 0.0120998235 0.0052881452 1.194152 AAAAAA,UGGUGA,UGGUGG,UGGUGU,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SRSF4 48 3740 0.0123519032 0.0054214720 1.187977 AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
HNRNPM 12 999 0.0032770355 0.0014492040 1.177131 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
DAZAP1 76 5964 0.0194101336 0.0086445016 1.166955 AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUG,AGUAAA,AGUAUA,AGUAUG,AGUUAA,AGUUUG,UAGGAA,UAGUAA,UAGUAU,UAGUUU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
RBMY1A1 5 489 0.0015124779 0.0007101099 1.090800 ACAAGA,CAAGAC ACAAGA,CAAGAC
ELAVL4 60 5105 0.0153768591 0.0073996354 1.055235 AAAAAA,AUCUAA,AUUUAU,UAUCUA,UAUUUU,UCUAAU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
TUT1 7 678 0.0020166373 0.0009840095 1.035207 AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SSB 1 5 0.09090909 0.0003929788 7.853829 UGCUGU CUGUUU,GCUGUU,UGCUGU
MBNL1 3 36 0.18181818 0.0024233691 6.229338 UGCUGU,UUGCUG,UUUGCU AUGCUC,AUGCUU,CCCGCU,CCGCUA,CCGCUG,CCUGCU,CGCUGC,CGCUGU,CUGCCG,CUGCCU,CUGCGG,CUGCUC,CUGCUU,CUUGCU,GCUUGC,GCUUGU,GGCUUU,GUGCUG,UGCGGC,UGCUGC,UGCUGU,UGCUUU,UUGCCU,UUGCUC,UUGCUG,UUGCUU,UUGUGC
PTBP1 1 30 0.09090909 0.0020303904 5.484596 GCUGUG AGCUGU,CAUCUU,CCAUCU,CCUCUU,CUAUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUUCU,GGCUCC,GUCUUU,UACUUU,UAUUUU,UCCUCU,UCUAUC,UCUCUU,UCUUCU,UCUUUC,UUACUU,UUCUUC,UUCUUG,UUUCUU
SRSF2 1 479 0.09090909 0.0314383023 1.531901 UGCUGU AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
TUT1 2 230 0.007142857 0.001163845 2.617602 AAUACU,CAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
RBM41 5 502 0.014285714 0.002534260 2.494937 AUACUU,UACAUG,UACUUG,UUACAU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
MATR3 1 216 0.004761905 0.001093309 2.122837 AAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
RBM28 2 340 0.007142857 0.001718057 2.055723 UGUAGA AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
KHDRBS2 8 1051 0.021428571 0.005300282 2.015395 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SNRNP70 1 253 0.004761905 0.001279726 1.895704 UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
KHDRBS3 11 1646 0.028571429 0.008298065 1.783726 AAAUAA,AAUAAA,AUAAAA,AUAAAG,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
CPEB4 4 691 0.011904762 0.003486497 1.771688 UUUUUU UUUUUU
DDX19B 4 691 0.011904762 0.003486497 1.771688 UUUUUU UUUUUU
EIF4A3 4 691 0.011904762 0.003486497 1.771688 UUUUUU UUUUUU
SNRPB2 1 288 0.004761905 0.001456066 1.709463 UGCAGU AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
PUM2 4 764 0.011904762 0.003854293 1.627001 UACAUA,UGUAGA,UGUAUA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
HNRNPA3 1 349 0.004761905 0.001763402 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
HNRNPAB 1 351 0.004761905 0.001773478 1.424957 AUAGCA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
KHDRBS1 10 1945 0.026190476 0.009804514 1.417524 AUAAAA,CUAAAU,UAAAAA,UUAAAU,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
U2AF2 5 1071 0.014285714 0.005401048 1.403262 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
RALY 5 1117 0.014285714 0.005632809 1.342647 UUUUUC,UUUUUU UUUUUC,UUUUUG,UUUUUU
ELAVL3 9 1928 0.023809524 0.009718863 1.292679 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
ELAVL4 14 2916 0.035714286 0.014696695 1.281010 AUUUAU,UAUUUA,UAUUUU,UUGUAU,UUUGUA,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
HNRNPCL1 6 1381 0.016666667 0.006962918 1.259202 AUUUUU,CUUUUU,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
PABPC5 2 596 0.007142857 0.003007860 1.247764 AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
A1CF 2 598 0.007142857 0.003017936 1.242939 AGUAUA,UGAUCA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
TIAL1 27 5597 0.066666667 0.028204353 1.241048 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUU,CAGUUU,CUUUUG,CUUUUU,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUCAGU,UUUUAA,UUUUUA,UUUUUC,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPC 9 2006 0.023809524 0.010111850 1.235492 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
ELAVL2 47 9826 0.114285714 0.049511286 1.206816 AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUC,AUUUUU,CUUUUU,GAUUUU,GUUUUU,UAUACU,UAUAUU,UAUUAU,UAUUUA,UAUUUU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAUAU,UUCUUU,UUGUAU,UUUAAG,UUUAUA,UUUCUU,UUUGAU,UUUUAA,UUUUUA,UUUUUC,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
TARDBP 4 1034 0.011904762 0.005214631 1.190902 GAAUGG,GAAUGU,GUGUGU,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
SYNCRIP 4 1041 0.011904762 0.005249899 1.181177 UUUUUU AAAAAA,UUUUUU
CPEB2 6 1487 0.016666667 0.007496977 1.152585 AUUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
CELF1 4 1097 0.011904762 0.005532044 1.105654 GUGUGU,GUUUGU,UGUUUG CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
PPIE 41 9262 0.100000000 0.046669690 1.099442 AAAAAU,AAAUAA,AAAUUU,AAUAAA,AAUUUU,AUAAAA,AUAAAU,AUAUUU,AUUAUU,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUU,UAUAAA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAU,UUAUAU,UUUAUA,UUUUAA,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
RBM24 3 888 0.009523810 0.004479041 1.088349 AGUGUG,GAGUGU,GUGUGU AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
ZCRB1 2 666 0.007142857 0.003360540 1.087808 ACUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
QKI 3 904 0.009523810 0.004559653 1.062615 ACUAAU,AUUAAC,CACUAA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
HNRNPU 4 1136 0.011904762 0.005728537 1.055300 UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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