ENSG00000130816:-:19:10177291:10182077

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000130816:-:19:10177291:10182077 ENSG00000130816 ENST00000676610 - 19 10177292 10182077 441 GCUCAAAGAUUUGGAAAGAGACAGCUUAACAGAAAAGGAAUGUGUGAAGGAGAAAUUGAAUCUCUUGCACGAAUUUCUGCAAACAGAAAUAAAGAAUCAGUUAUGUGACUUGGAAACCAAAUUACGUAAAGAAGAAUUAUCCGAGGAGGGCUACCUGGCUAAAGUCAAAUCCCUUUUAAAUAAAGAUUUGUCCUUGGAGAACGGUGCUCAUGCUUACAACCGGGAAGUGAAUGGACGUCUAGAAAACGGGAACCAAGCAAGAAGUGAAGCCCGUAGAGUGGGAAUGGCAGAUGCCAACAGCCCCCCCAAACCCCUUUCCAAACCUCGCACGCCCAGGAGGAGCAAGUCCGAUGGAGAGGCUAAGCCUGAACCUUCACCUAGCCCCAGGAUUACAAGGAAAAGCACCAGGCAAACCACCAUCACAUCUCAUUUUGCAAAGGGGCUCAAAGAUUUGGAAAGAGACAGCUUAACAGAAAAGGAAUGUGUGAAGG circ
ENSG00000130816:-:19:10177291:10182077 ENSG00000130816 ENST00000676610 - 19 10177292 10182077 22 UUUGCAAAGGGGCUCAAAGAUU bsj
ENSG00000130816:-:19:10177291:10182077 ENSG00000130816 ENST00000676610 - 19 10182068 10182277 210 UCAGAUGACUUCUUAGCAUUAGGCAUUCCAGUAGGACACUCUAGACUCUUGCGGGGAGACAAAAGCCAGCUUAGUUUUUUCUAACACUCAUAUGUUAAACUUGUUUGUGUCCAAAACUUCUUUAGAACUGUGAUAUUCUUACAGGCAAAUGAAGUUGCUUAACAAGUGUUUGUAUUUUCUCCCCUAUUUCUUCCUCCCAGGCUCAAAGAU ie_up
ENSG00000130816:-:19:10177291:10182077 ENSG00000130816 ENST00000676610 - 19 10177092 10177301 210 UUGCAAAGGGGUCAGUAUACGAUAAAUUGGCGGCUGCCUUUUUUAGGGGCCGGCUGUUUUGGGAUGGAAUUGGUAGGGCGUCACGUGGCAAUUCUGUCUUCCGUGUUGUAUAGGUUUUCAUCUUGCGGUUCUGUUCUCUAGACAUUUAUGAAUAGCAUUUCUGAAAACGUUACCUGUUUUUACUCAUAUAGGAAAGUUCAAAUGUACACA ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
SRSF11 2 688 0.006802721 0.0009985015 2.768275 AAGAAG AAGAAG
EIF4B 4 1179 0.011337868 0.0017100607 2.729030 CUUGGA,UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
HNRNPM 3 999 0.009070295 0.0014492040 2.645889 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
IGF2BP1 2 831 0.006802721 0.0012057377 2.496196 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
TARDBP 7 2654 0.018140590 0.0038476365 2.237177 GAAUGG,GAAUGU,GUGAAU,UGAAUG,UGUGUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
PABPC5 5 2400 0.013605442 0.0034795387 1.967216 AGAAAA,AGAAAU,GAAAUU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
ZCRB1 3 1605 0.009070295 0.0023274215 1.962417 GAAUUA,GCUUAA,GGAUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
KHDRBS3 7 3429 0.018140590 0.0049707696 1.867680 AAAUAA,AAUAAA,AUAAAG,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PABPC1 9 4443 0.022675737 0.0064402624 1.815958 ACGAAU,AGAAAA,CAAACA,CAAACC,CAAAUC,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
RBM24 4 2357 0.011337868 0.0034172229 1.730253 AGAGUG,GAGUGG,GUGUGA,UGUGUG AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG
CELF2 3 1886 0.009070295 0.0027346479 1.729794 AUGUGU,UAUGUG,UGUGUG AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
TRA2B 14 7329 0.034013605 0.0106226650 1.678966 AAAGAA,AAGAAG,AAGAAU,AAGGAA,AGAAGA,AGGAAA,GAAAGA,GAAGAA,GAAGGA,GAAUUA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
HNRNPA3 3 2140 0.009070295 0.0031027457 1.547604 AAGGAG,AGGAGC,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ESRP2 3 2150 0.009070295 0.0031172377 1.540881 GGGAAG,GGGAAU,UGGGAA GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA
LIN28A 7 4315 0.018140590 0.0062547643 1.536194 AGGAGA,GGAGAA,GGAGGA,GGAGGG,UGGAGA AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU
G3BP2 2 1644 0.006802721 0.0023839405 1.512764 AGGAUU,GGAUUA AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG
NELFE 4 3028 0.011337868 0.0043896388 1.368975 CUGGCU,GGCUAA,UGGCUA CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA
PABPN1 1 1222 0.004535147 0.0017723764 1.355464 AGAAGA AAAAGA,AGAAGA
HNRNPA2B1 13 8607 0.031746032 0.0124747476 1.347566 AAGAAG,AAGGAA,AAGGAG,AAGGGG,AGGAGC,AGGGGC,CAAGAA,CAAGGA,GAAGCC,GAAGGA,GGAACC AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
PABPC3 1 1234 0.004535147 0.0017897669 1.341378 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
KHDRBS2 2 1858 0.006802721 0.0026940701 1.336325 AAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
SRSF10 21 13860 0.049886621 0.0200874160 1.312361 AAAGAA,AAAGAG,AAAGGA,AAAGGG,AAGAAG,AAGAGA,AAGGAA,AAGGAG,AAGGGG,AGAGAC,CAAAGA,GAAAGA,GAGAAA,GAGAAC,GAGACA,GAGAGG,GAGGAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
HNRNPU 2 1965 0.006802721 0.0028491350 1.255588 CCCCCC AAAAAA,CCCCCC,GGGGGG,UUUUUU
SART3 3 2634 0.009070295 0.0038186524 1.248086 AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
HNRNPK 13 9304 0.031746032 0.0134848428 1.235238 CAAACC,CCAAAC,CCCCAA,CCCCCA,CCCCCC,CCCCUU,GCCCAG,GCCCCC,UCCCUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
RBMX 6 4925 0.015873016 0.0071387787 1.152827 AAGAAG,AAGGAA,ACCAAA,GAAGGA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
CELF5 1 1415 0.004535147 0.0020520728 1.144068 UGUGUG GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
YBX2 1 1480 0.004535147 0.0021462711 1.079317 ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
PCBP1 17 13384 0.040816327 0.0193975949 1.073269 AAACCA,AAAUUA,AACCAA,AAUUAC,ACCAAA,CAAACC,CCAAAC,CCCCAA,CCCCCC,CCUUUC,CUUUCC AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
SRSF4 4 3740 0.011337868 0.0054214720 1.064393 AAGAAG,AGAAGA,GAAGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
NONO 1 1498 0.004535147 0.0021723567 1.061888 GAGAGG AGAGGA,AGGAAC,GAGAGG,GAGGAA
CPEB2 2 2261 0.006802721 0.0032780993 1.053252 CAUUUU,CCUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
RBM5 8 6879 0.020408163 0.0099705232 1.033405 AAGGAA,AAGGAG,AAGGGG,CAAGGA,CCCCCC,GAAGGA AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
HNRNPH3 9 7688 0.022675737 0.0111429292 1.025021 AAUGUG,GAAUGU,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGGCU AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
NOVA1 4 3872 0.011337868 0.0056127669 1.014365 ACCACC,AGCACC,CCCCCC AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA2B1 2 49 0.13636364 0.003274823 5.379898 AAGGGG,AGGGGC AAGGAA,AAGGGG,AAUUUA,AGAAGC,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,GAAGCC,GAAGGA,GCCAAG,GCGAAG,GGAACC,GGGGCC,UAGACA,UUAGGG
HNRNPH2 2 80 0.13636364 0.005305214 4.683904 AAGGGG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
RBM5 1 56 0.09090909 0.003733298 4.605902 AAGGGG AAAAAA,AAGGAA,AAGGGG,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CUCUUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGUGGU,UCUUCU
HNRNPF 2 90 0.13636364 0.005960178 4.515960 AAGGGG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,CGAUGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 2 90 0.13636364 0.005960178 4.515960 AAGGGG,GGGGCU AAGGCG,AAGGGA,AAGGGG,AAGGUG,AGGAAG,AGGGAA,AGGGGA,AUUGGG,CAGGAC,CGAGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGGU,UGGGUG,UGUGGG
HNRNPH3 1 61 0.09090909 0.004060781 4.484596 GGGGCU AAGGGA,AAGGUG,AGGGAA,AGGGGA,AUUGGG,CGAGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGUGU,UCGGGC,UGGGUG,UGUGGG
SRSF10 1 160 0.09090909 0.010544931 3.107875 AAGGGG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 GUAGGG,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPAB 4 351 0.011904762 0.0017734784 2.746885 AGACAA,AUAGCA,CAAAGA,GACAAA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
MATR3 2 216 0.007142857 0.0010933091 2.707800 AUCUUG,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
IFIH1 1 146 0.004761905 0.0007406288 2.684716 GGGCCG CCGCGG,CGCGGA,GCCGCG,GCGGAU,GGCCCU,GGCCGC,GGGCCG
SSB 5 505 0.014285714 0.0025493753 2.486358 CUGUUU,GCUGUU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGUAGG AAUUUA,AGAUAU,AGUAGG
QKI 8 904 0.021428571 0.0045596534 2.232540 ACUCAU,CUAACA,CUCAUA,UACUCA,UCAUAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
RBMS1 1 217 0.004761905 0.0010983474 2.116204 AUAUAG AUAUAC,AUAUAG,GAUAUA,UAUAUA
CELF1 8 1097 0.021428571 0.0055320435 1.953651 CUGUCU,GUGUUG,GUUUGU,UGUUGU,UGUUUG,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
SNRNP70 1 253 0.004761905 0.0012797259 1.895704 GUUCAA AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
CSTF2 7 1022 0.019047619 0.0051541717 1.885798 GUGUUG,GUGUUU,GUUUUG,UGUUUG,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
RBM3 3 541 0.009523810 0.0027307537 1.802240 AAAACG,AAAACU,AUACGA AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AGUAUA,CAGUAU,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
ZNF638 3 646 0.009523810 0.0032597743 1.546767 GGUUCU,UGUUCU,UGUUGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
HNRNPA2B1 11 2033 0.028571429 0.0102478839 1.479247 AAGGGG,AGGGGC,AGUAGG,AUAGCA,CUAGAC,GGGGCC,GUAGGG,UAGACA,UAGACU,UUAGGG AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
RBM28 1 340 0.004761905 0.0017180572 1.470761 AGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
RBMS3 2 562 0.007142857 0.0028365578 1.332360 AUAUAG,CAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ENOX1 3 756 0.009523810 0.0038139863 1.320239 AGGACA,UAGACA,UGUACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RC3H1 2 631 0.007142857 0.0031841999 1.165570 UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
CELF2 3 881 0.009523810 0.0044437727 1.099754 UAUGUU,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,GUGUUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
CPEB4 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
DDX19B 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU
EIF4A3 2 691 0.007142857 0.0034864974 1.034723 UUUUUU UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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