circRNA Analysis
WANG Ziyi
Date: 18 5月 2022
ENSG00000095380:+:9:98060781:98060997
1. Sequences
| id | gene | transcript | strand | chrom | startGR | endGR | length | seq | type |
|---|---|---|---|---|---|---|---|---|---|
| ENSG00000095380:+:9:98060781:98060997 | ENSG00000095380 | MSTRG.33120.3 | + | 9 | 98060782 | 98060997 | 216 | GAGUGUGGGGCUGAUUGUGCUAAGUUCCAGAAGAGUGAGCUAGAAUUCAAGUUUAAUCGGAAAGCCUUGGAGAGGCCAUACACCUCGAAGCAUUCCUGGGGGAAGACGUACGGGGAGCACAAACGACAUCUGGAGUUCAGCCAUGACCAGUACAGGGAGCUGCAGAGGUACGCCGAGGAGGUUGGGAUCUUCUUCACUGCCUCUGGCAUGGAUGAGGAGUGUGGGGCUGAUUGUGCUAAGUUCCAGAAGAGUGAGCUAGAAUUCAA | circ |
| ENSG00000095380:+:9:98060781:98060997 | ENSG00000095380 | MSTRG.33120.3 | + | 9 | 98060782 | 98060997 | 22 | GCAUGGAUGAGGAGUGUGGGGC | bsj |
| ENSG00000095380:+:9:98060781:98060997 | ENSG00000095380 | MSTRG.33120.3 | + | 9 | 98060582 | 98060791 | 210 | AUGGCUUGAACCCGGGAGGCAUUGGUUGUAGUGAGCCGAGAUCACACCUUCUGCACUCCAGCCUGGGUGAAAGAGCGAAACUCUGUCUCUAAAUAAAUAAAUAAAUAAAGAUGGUGAUGUCAUAGUGGUUGCUCCAGAAUUUUUUCCUUUUUUUGAGAAUCUACGACAGUCACUGAAAGAUGUCCUAAUGUGUGUUGUAGGAGUGUGGGG | ie_up |
| ENSG00000095380:+:9:98060781:98060997 | ENSG00000095380 | MSTRG.33120.3 | + | 9 | 98060988 | 98061197 | 210 | CAUGGAUGAGGUGAGUCCUCUGCUGCUCUGUCAUUUGUCACUUUAGCAGACCAAGGGUCAGCAGGCAGCCUGGUGACUUCCGGCUUAGGGCCACCUCCAGCCCUUGCUCAUCCUUUCUGUUCCCAGCUACUGGAGAGGCUAGCAGGCGCCAAAGCCCAGUGAGAAUCUGUGGGAAGGAUGCCAUUGUUUUAAAAACACAUUGUCUCUGGC | ie_down |
- Note:
- id: unique identifier.
- gene: represents the gene from which the circRNA arises.
- transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
- strand: is the strand from which the gene is transcribed.
- chrom: is the chromosome from which the circRNA is derived.
- startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
- endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
- length: length of the extracted sequences.
- seq: sequence used in the downstream analysis.
- type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.
2. RNA Binding Proteins Analysis
RBP on full sequence
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| ANKHD1 | 2 | 339 | 0.013888889 | 0.0004927293 | 4.816992 | AGACGU,GACGUA | AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU |
| FXR1 | 1 | 411 | 0.009259259 | 0.0005970720 | 3.954920 | ACGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| AGO1 | 1 | 548 | 0.009259259 | 0.0007956130 | 3.540758 | GAGGUA | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBM24 | 5 | 2357 | 0.027777778 | 0.0034172229 | 3.023035 | AGAGUG,AGUGUG,GAGUGA,GAGUGU,GUGUGG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| EIF4B | 2 | 1179 | 0.013888889 | 0.0017100607 | 3.021812 | CUUGGA,UCGGAA | CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC |
| SNRNP70 | 2 | 1237 | 0.013888889 | 0.0017941145 | 2.952587 | AUUCAA,UUCAAG | AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG |
| ESRP2 | 3 | 2150 | 0.018518519 | 0.0031172377 | 2.570629 | GGGAAG,GGGGAA,GGGGAG | GGGAAA,GGGAAG,GGGAAU,GGGGAA,GGGGAG,GGGGAU,UGGGAA,UGGGGA |
| PABPN1 | 1 | 1222 | 0.009259259 | 0.0017723764 | 2.385212 | AGAAGA | AAAAGA,AGAAGA |
| HNRNPLL | 4 | 3534 | 0.023148148 | 0.0051229360 | 2.175854 | ACAAAC,ACGACA,CACUGC,CAUACA | ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC |
| CELF5 | 1 | 1415 | 0.009259259 | 0.0020520728 | 2.173815 | GUGUGG | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| RBM3 | 2 | 2152 | 0.013888889 | 0.0031201361 | 2.154250 | AAACGA,AAGACG | AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU |
| YBX2 | 1 | 1480 | 0.009259259 | 0.0021462711 | 2.109064 | ACAUCU | AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU |
| CELF6 | 3 | 2997 | 0.018518519 | 0.0043447134 | 2.091636 | GUGGGG,GUGUGG,UGUGGG | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| NONO | 1 | 1498 | 0.009259259 | 0.0021723567 | 2.091636 | GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| ENOX1 | 3 | 3195 | 0.018518519 | 0.0046316558 | 1.999369 | AGUACA,CAUACA,GUACAG | AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA |
| ZCRB1 | 1 | 1605 | 0.009259259 | 0.0023274215 | 1.992164 | GUUUAA | AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA |
| G3BP2 | 1 | 1644 | 0.009259259 | 0.0023839405 | 1.957549 | GGAUGA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| ZNF638 | 1 | 1773 | 0.009259259 | 0.0025708878 | 1.848630 | GGUUGG | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| CELF4 | 1 | 1782 | 0.009259259 | 0.0025839306 | 1.841329 | GUGUGG | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| HNRNPH2 | 9 | 9711 | 0.046296296 | 0.0140746688 | 1.717796 | CUGGGG,GGGAAG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,UGGGGG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| NELFE | 2 | 3028 | 0.013888889 | 0.0043896388 | 1.661757 | CUCUGG,UCUGGC | CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA |
| ZRANB2 | 2 | 3173 | 0.013888889 | 0.0045997733 | 1.594297 | AGGUAC,GAGGUU | AAAGGU,AGGGAA,AGGUAA,AGGUAC,AGGUAG,AGGUAU,AGGUCU,AGGUUA,AGGUUU,CGGUAA,CGGUAG,CGGUAU,CGGUCU,GAGGUU,GGGUAA,GGGUGA,GGUAAA,GGUGGU,GUAAAG,GUGGUG,UAAAGG,UGGUAA,UGGUGG |
| LIN28A | 3 | 4315 | 0.018518519 | 0.0062547643 | 1.565941 | AGGAGU,UGGAGA,UGGAGU | AGGAGA,AGGAGU,CGGAGA,CGGAGG,CGGAGU,GGAGAA,GGAGAU,GGAGGA,GGAGGG,GGAGUA,UGGAGA,UGGAGG,UGGAGU |
| HNRNPH1 | 8 | 10717 | 0.041666667 | 0.0155325680 | 1.423597 | CUGGGG,GGGAAG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,UGGGGG,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU |
| IGF2BP2 | 6 | 8408 | 0.032407407 | 0.0121863560 | 1.411057 | AAUUCA,ACAAAC,CAUACA,CCAUAC,GAAUUC,GCAUUC | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAAAC,CAAACA,CAAAUC,CAACAC,CAACUC,CAAUAC,CAAUCA,CAAUUC,CACACA,CACUCA,CAUACA,CAUUCA,CCAAAC,CCAAUC,CCACAC,CCACUC,CCAUAC,CCAUUC,GAAAAC,GAAAUC,GAACAC,GAACUC,GAAUAC,GAAUUC,GCAAAC,GCAAUC,GCACAC,GCACUC,GCAUAC,GCAUUC |
| IGF2BP3 | 3 | 4815 | 0.018518519 | 0.0069793662 | 1.407801 | AAUUCA,ACAAAC,CAUACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
| SRSF4 | 2 | 3740 | 0.013888889 | 0.0054214720 | 1.357175 | AGAAGA,GGAAGA | AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA |
| HNRNPH3 | 5 | 7688 | 0.027777778 | 0.0111429292 | 1.317803 | GGGAAG,GGGCUG,GGGGAG,GGGGCU,UGUGGG | AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU |
| HNRNPF | 7 | 10561 | 0.037037037 | 0.0153064921 | 1.274825 | CUGGGG,GGGAAG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,UGUGGG | AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG |
| TARDBP | 1 | 2654 | 0.009259259 | 0.0038476365 | 1.266924 | UUGUGC | GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC |
| MSI1 | 1 | 2770 | 0.009259259 | 0.0040157442 | 1.205229 | AGGAGG | AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG |
| SFPQ | 16 | 24050 | 0.078703704 | 0.0348548043 | 1.175074 | AGAGGU,AUCGGA,CUGGAG,GAAGAG,GAAGCA,GAGAGG,GAGGUA,GGAAGA,GGAGAG,GGGAUC,GGGGGA,UCGGAA,UCUGGA,UGAUUG,UGGAGA | AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU |
| PUM1 | 3 | 5823 | 0.018518519 | 0.0084401638 | 1.133626 | AGAAUU,CCAGAA,UUUAAU | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| RBM4 | 1 | 3065 | 0.009259259 | 0.0044432593 | 1.059278 | CUUCUU | CCUCUU,CCUUCC,CCUUCU,CGCGCG,CGCGGG,CGCGGU,CUCUUU,CUUCCU,CUUCUU,GCGCGA,GCGCGC,GCGCGG,UCCUUC,UUCCUU,UUCUUG |
RBP on BSJ (Exon Only)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| LIN28A | 1 | 35 | 0.09090909 | 0.002357873 | 5.268867 | AGGAGU | AGGAGA,AGGAGU,CGGAGG,GGAGAA,GGAGAU,GGAGGA,GGAGGG,UGGAGA,UGGAGG,UGGAGU |
| FMR1 | 2 | 117 | 0.13636364 | 0.007728583 | 4.141111 | AGGAGU,UGAGGA | AAAAAA,AAGGAA,AAGGAU,AAGGGA,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUGGAG,CAGCUG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCUAAG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGCAUA,GGCUGA,GGCUGG,GGGCAU,GGGCUA,GGGCUG,GUGCGA,GUGGCU,UAAGGA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGGC,UGGAGU,UGGCUG |
| HNRNPA1 | 1 | 119 | 0.09090909 | 0.007859576 | 3.531901 | GAGGAG | AAAAAA,AAAGAG,AAGAGG,AAGGUG,AAUUUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUAGG,AGUGAA,AUAGGG,AUUAGA,AUUUAA,CAAAGA,CAAGGA,CAGGGA,CCAAGG,GAAGGU,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGUGCG,GUUAGG,UAGACA,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGCU,UAGGGC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUUAGA |
| SRSF10 | 1 | 160 | 0.09090909 | 0.010544931 | 3.107875 | GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG |
| SRSF2 | 3 | 479 | 0.18181818 | 0.031438302 | 2.531901 | AGGAGU,GAGGAG,GGAGUG | AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG |
| SRSF1 | 1 | 625 | 0.09090909 | 0.041000786 | 1.148773 | GAGGAG | AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG |
RBP on BSJ (Exon and Intron)
Plot
Spreadsheet
| id | foreground | background | foregroundNorm | backgroundNorm | log2FC | motifF | motifB |
|---|---|---|---|---|---|---|---|
| FXR1 | 1 | 69 | 0.004761905 | 0.0003526804 | 3.755106 | ACGACA | ACGACA,ACGACG,AUGACA,AUGACG |
| PPRC1 | 1 | 127 | 0.004761905 | 0.0006449012 | 2.884389 | GGCGCC | CCGCGC,CGCGCC,CGCGCG,CGGCGC,GCGCGC,GGCGCC,GGCGCG,GGGCGC |
| ZC3H10 | 1 | 140 | 0.004761905 | 0.0007103990 | 2.744837 | GAGCGA | CAGCGA,CAGCGC,CCAGCG,CGAGCG,GAGCGA,GAGCGC,GCAGCG,GGAGCG |
| HNRNPA1L2 | 1 | 188 | 0.004761905 | 0.0009522370 | 2.322146 | UUAGGG | AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG |
| KHDRBS3 | 16 | 1646 | 0.040476190 | 0.0082980653 | 2.286227 | AAAUAA,AAUAAA,AUAAAG,UAAAUA,UUUUUU | AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU |
| PABPC3 | 2 | 310 | 0.007142857 | 0.0015669085 | 2.188580 | AAAAAC,AAAACA | AAAAAC,AAAACA,AAAACC,GAAAAC |
| HNRNPM | 1 | 222 | 0.004761905 | 0.0011235389 | 2.083489 | GAAGGA | AAGGAA,GAAGGA,GGGGGG |
| CELF5 | 5 | 669 | 0.014285714 | 0.0033756550 | 2.081334 | GUGUGG,GUGUGU,GUGUUG,UGUGUG,UGUGUU | GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| RBM28 | 2 | 340 | 0.007142857 | 0.0017180572 | 2.055723 | UGUAGG,UGUAGU | AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU |
| HNRNPL | 11 | 1419 | 0.028571429 | 0.0071543732 | 1.997676 | AAACAC,AAAUAA,AACACA,AAUAAA,CACACC | AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA |
| RC3H1 | 4 | 631 | 0.011904762 | 0.0031841999 | 1.902536 | CCUUCU,CUUCUG,UCUGUG,UUCUGU | CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU |
| CELF4 | 5 | 776 | 0.014285714 | 0.0039147521 | 1.867580 | GUGUGG,GUGUGU,GUGUUG,UGUGUG,UGUGUU | GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU |
| KHDRBS2 | 7 | 1051 | 0.019047619 | 0.0053002821 | 1.845470 | AAUAAA,UUUUUU | AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU |
| CELF6 | 8 | 1196 | 0.021428571 | 0.0060308343 | 1.829106 | GUGAUG,GUGGGG,GUGUGG,GUGUUG,UGUGGG,UGUGUG,UGUGUU | GUGAGG,GUGAUG,GUGGGG,GUGGUG,GUGUGG,GUGUUG,UGUGAG,UGUGAU,UGUGGG,UGUGGU,UGUGUG,UGUGUU |
| AGO1 | 1 | 283 | 0.004761905 | 0.0014308746 | 1.734641 | UGAGGU | AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU |
| RBM24 | 5 | 888 | 0.014285714 | 0.0044790407 | 1.673311 | AGUGUG,GAGUGU,GUGUGG,GUGUGU,UGUGUG | AGAGUG,AGUGUG,GAGUGA,GAGUGG,GAGUGU,GUGUGA,GUGUGG,GUGUGU,UGAGUG,UGUGUG |
| PUM2 | 4 | 764 | 0.011904762 | 0.0038542926 | 1.627001 | UAAAUA | GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA |
| CELF1 | 6 | 1097 | 0.016666667 | 0.0055320435 | 1.591081 | CUGUCU,GUGUGU,GUGUUG,UGUGUG,UGUGUU,UGUUGU | CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU |
| ACO1 | 1 | 325 | 0.004761905 | 0.0016424829 | 1.535660 | CAGUGA | CAGUGA,CAGUGC,CAGUGG,CAGUGU |
| G3BP2 | 2 | 490 | 0.007142857 | 0.0024738009 | 1.529772 | AGGAUG,GGAUGA | AGGAUA,AGGAUG,AGGAUU,GGAUAA,GGAUAG,GGAUGA,GGAUGG,GGAUUA,GGAUUG |
| CSTF2 | 5 | 1022 | 0.014285714 | 0.0051541717 | 1.470761 | GUGUGU,GUGUUG,UGUGUG,UGUGUU,UGUUUU | GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU |
| CPEB4 | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| DDX19B | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| EIF4A3 | 3 | 691 | 0.009523810 | 0.0034864974 | 1.449760 | UUUUUU | UUUUUU |
| HNRNPA3 | 1 | 349 | 0.004761905 | 0.0017634019 | 1.433177 | CCAAGG | AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC |
| CELF2 | 4 | 881 | 0.011904762 | 0.0044437727 | 1.421682 | AUGUGU,GUGUGU,UGUGUG,UGUUGU | AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU |
| NELFE | 5 | 1059 | 0.014285714 | 0.0053405885 | 1.419503 | CUCUGG,GUCUCU,UCUCUG,UCUGGC | CUCUCU,CUCUGG,CUGGCU,CUGGUU,GCUAAC,GGCUAA,GGUCUC,GGUUAG,GUCUCU,UCUCUC,UCUCUG,UCUGGC,UCUGGU,UGGCUA,UGGUUA |
| U2AF2 | 5 | 1071 | 0.014285714 | 0.0054010480 | 1.403262 | UUUUCC,UUUUUC,UUUUUU | UUUUCC,UUUUUC,UUUUUU |
| NOVA2 | 7 | 1434 | 0.019047619 | 0.0072299476 | 1.397554 | AGAUCA,AGGCAU,GAGGCA,GAUCAC,UUUUUU | AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU |
| NONO | 1 | 364 | 0.004761905 | 0.0018389762 | 1.372636 | GAGAGG | AGAGGA,AGGAAC,GAGAGG,GAGGAA |
| RALY | 5 | 1117 | 0.014285714 | 0.0056328094 | 1.342647 | UUUUUC,UUUUUG,UUUUUU | UUUUUC,UUUUUG,UUUUUU |
| HNRNPCL1 | 6 | 1381 | 0.016666667 | 0.0069629182 | 1.259202 | AUUUUU,CUUUUU,UUUUUG,UUUUUU | AUUUUU,CUUUUU,UUUUUG,UUUUUU |
| PUM1 | 10 | 2172 | 0.026190476 | 0.0109482064 | 1.258348 | AGAAUU,CAGAAU,CCAGAA,UAAAUA,UAAUGU,UUGUAG | AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU |
| CPEB2 | 6 | 1487 | 0.016666667 | 0.0074969770 | 1.152585 | AUUUUU,CCUUUU,CUUUUU,UUUUUU | AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU |
| ZNF638 | 2 | 646 | 0.007142857 | 0.0032597743 | 1.131729 | GGUUGU,UGUUGU | CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU |
| IGF2BP3 | 5 | 1348 | 0.014285714 | 0.0067966546 | 1.071676 | AAAAAC,AAAACA,AAACAC,AAACUC,AACACA | AAAAAC,AAAACA,AAAAUC,AAACAC,AAACUC,AAAUAC,AAAUCA,AAAUUC,AACACA,AACUCA,AAUACA,AAUUCA,ACAAAC,ACAAUC,ACACAC,ACACUC,ACAUAC,ACAUUC,CAAACA,CAAUCA,CACACA,CACUCA,CAUACA,CAUUCA |
Help
- Note:
- foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
- background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
- foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
- backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
- log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
- motifF: motifs of the corresponding RBP found in the foreground sequences.
- motifB: motifs of the corresponding RBP found in the background sequences.