ENSG00000198492:+:1:28742402:28743986

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000198492:+:1:28742402:28743986 ENSG00000198492 ENST00000478283 + 1 28742403 28743986 1584 AAUAAUGCAUAUACUGCCAUGUCAGAUUCCUACUUACCCAGUUACUACAGUCCCUCCAUUGGCUUCUCCUAUUCUUUGGGUGAAGCUGCUUGGUCUACGGGGGGUGACACAGCCAUGCCCUACUUAACUUCUUAUGGACAGCUGAGCAACGGAGAGCCCCACUUCCUACCAGAUGCAAUGUUUGGGCAACCAGGAGCCCUAGGUAGCACUCCAUUUCUUGGUCAGCAUGGUUUUAAUUUCUUUCCCAGUGGGAUUGACUUCUCAGCAUGGGGAAAUAACAGUUCUCAGGGACAGUCUACUCAGAGCUCUGGAUAUAGUAGCAAUUAUGCUUAUGCACCUAGCUCCUUAGGUGGAGCCAUGAUUGAUGGACAGUCAGCUUUUGCCAAUGAGACCCUCAAUAAGGCUCCUGGCAUGAAUACUAUAGACCAAGGGAUGGCAGCACUGAAGUUGGGUAGCACAGAAGUUGCAAGCAAUGUUCCAAAAGUUGUAGGUUCUGCUGUUGGUAGCGGGUCCAUUACUAGUAACAUCGUGGCUUCCAAUAGUUUGCCUCCAGCCACCAUUGCUCCUCCAAAACCAGCAUCUUGGGCUGAUAUUGCUAGCAAGCCUGCAAAACAGCAACCUAAACUGAAGACCAAGAAUGGCAUUGCAGGGUCAAGUCUUCCGCCACCCCCGAUAAAGCAUAACAUGGAUAUUGGAACUUGGGAUAACAAGGGUCCCGUUGCAAAAGCCCCCUCACAGGCUUUGGUUCAGAAUAUAGGUCAGCCAACCCAGGGGUCUCCUCAGCCUGUAGGUCAGCAGGCUAACAAUAGCCCACCAGUGGCUCAGGCAUCAGUAGGGCAACAGACACAGCCAUUGCCUCCACCUCCACCACAGCCUGCCCAGCUUUCAGUCCAGCAACAGGCAGCUCAGCCAACCCGCUGGGUAGCACCUCGGAACCGUGGCAGUGGGUUCGGUCAUAAUGGGGUGGAUGGUAAUGGAGUAGGACAGUCUCAGGCUGGUUCUGGAUCUACUCCUUCAGAACCCCACCCAGUGUUGGAGAAGCUUCGGUCCAUUAAUAACUAUAACCCCAAAGAUUUUGACUGGAAUCUGAAACAUGGCCGGGUUUUCAUCAUUAAGAGCUACUCUGAGGACGAUAUUCACCGUUCCAUUAAGUAUAAUAUUUGGUGCAGCACAGAGCAUGGUAACAAGAGACUGGAUGCUGCUUAUCGUUCCAUGAACGGGAAAGGCCCCGUUUACUUACUUUUCAGUGUCAACGGCAGUGGACACUUCUGUGGCGUGGCAGAAAUGAAAUCUGCUGUGGACUACAACACAUGUGCAGGUGUGUGGUCCCAGGACAAAUGGAAGGGUCGUUUUGAUGUCAGGUGGAUUUUUGUGAAGGACGUUCCCAAUAGCCAACUGCGACACAUUCGCCUAGAGAACAACGAGAAUAAACCAGUGACCAACUCUAGGGACACUCAGGAAGUGCCUCUGGAAAAGGCUAAGCAGGUGUUGAAAAUUAUAGCCAGCUACAAGCACACCACUUCCAUUUUUGAUGACUUCUCACACUAUGAGAAACGCCAAGAGGAAGAAGAAAGUGUUAAAAAGAAUAAUGCAUAUACUGCCAUGUCAGAUUCCUACUUACCCAGUUACUACAG circ
ENSG00000198492:+:1:28742402:28743986 ENSG00000198492 ENST00000478283 + 1 28742403 28743986 22 GUGUUAAAAAGAAUAAUGCAUA bsj
ENSG00000198492:+:1:28742402:28743986 ENSG00000198492 ENST00000478283 + 1 28742203 28742412 210 CAGGUUGGUCUCGAGCUCCUGACCUCAGGUGAUCCACCCGCCUCCACCUCCCAAAGUGUAGGGAUUACAGGUGUGAGCCACCGCGUCCGGCCUGCACACUCCUUUUUAUAGUAUAUUUGAAUUGCGUGACUAGGUGGGGGGAGGAAAUAGCCUGAUGUUAAUUUUUUGUGUUUUGAUUUGCCUUUUUUUUUCUUCCACAGAAUAAUGCAU ie_up
ENSG00000198492:+:1:28742402:28743986 ENSG00000198492 ENST00000478283 + 1 28743977 28744186 210 UGUUAAAAAGGUAACCCACUUCUUCUUAUUAAGAUUUUUAGGGAAGGAGGAACCAGAGAGAACAGAAGAGGUAUUAUAUAGUGAACCGUUAAUAAAAACUCUGUAAAUGAAUACAGUAUCACCUAACAGUUCAAGGCUUUAUAGAAGUAUAAUUGGUUUUAAUACUUGAACCCUAAUGUGAAGGAAUGUGAGAACAUUAGUAGAGGACAG ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
OAS1 1 77 0.001262626 0.0001130379 3.481549 GCAUAA GCAUAA
ESRP1 1 156 0.001262626 0.0002275250 2.472331 AGGGAU AGGGAU
RBMS1 4 497 0.003156566 0.0007217036 2.128877 AUAUAC,AUAUAG,GAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
HNRNPA1L2 2 314 0.001893939 0.0004564992 2.052706 GUAGGG,UAGGGA AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ANKHD1 2 339 0.001893939 0.0004927293 1.942523 GACGAU,GACGUU AGACGA,AGACGU,GACGAA,GACGAU,GACGUA,GACGUU
ERI1 4 632 0.003156566 0.0009173461 1.782818 UUCAGA,UUUCAG UUCAGA,UUUCAG
RBM28 5 822 0.003787879 0.0011926949 1.667165 AGUAGG,GAGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
HNRNPA0 2 453 0.001893939 0.0006579386 1.525365 AGUAGG AAUUUA,AGAUAU,AGUAGG
ACO1 7 1283 0.005050505 0.0018607779 1.440522 CAGUGA,CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
RBMS3 7 1283 0.005050505 0.0018607779 1.440522 AAUAUA,AUAUAG,CAUAUA,CUAUAG,UAUAGA,UAUAGC AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
IGF2BP1 4 831 0.003156566 0.0012057377 1.388440 AAGCAC,AGCACC,CCCGUU AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
RBFOX1 5 1077 0.003787879 0.0015622419 1.277772 AGCAUG,GCAUGA,UGACUG AGCAUG,GCAUGA,GCAUGC,GCAUGU,UGACUG,UGCAUG
SRP14 3 847 0.002525253 0.0012289250 1.039031 CCUGUA,CUGUAG,GCCUGU CCUGUA,CGCCUG,CUGUAG,GCCUGU
MSI1 12 2770 0.008207071 0.0040157442 1.031200 AGGAAG,AGGUAG,AGGUGG,AGUAGG,AGUUGG,UAGGUA,UAGGUG,UAGUAA,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PABPN1 1 9 0.09090909 0.0006549646 7.116864 AAAAGA AAAAGA,AGAAGA
TRA2B 2 51 0.13636364 0.0034058161 5.323315 AAAGAA,AAGAAU AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,GAAAGA,GAAGAA,GAAGGA,GGAAGG,UAAGAA
TRA2A 1 54 0.09090909 0.0036023055 4.657432 AAAGAA AAAGAA,AAGAAA,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
ZFP36 2 126 0.13636364 0.0083180508 4.035070 AAAAGA,AAAGAA AAAAAA,AAAAAG,AAAAAU,AAAAGA,AAAAGC,AAAAGG,AAAAGU,AAAAUA,AAAGAA,AAAGCA,AAAUAA,AACAAA,AACAAG,AAGAAA,AAGCAA,AAGGAA,AAGUAA,AAUAAG,ACAAAC,ACAAAG,ACAAGC,ACAAGG,ACAAGU,ACCUGU,AGAAAG,AGGAAA,AGUAAA,AUAAAG,AUAAAU,AUAAGC,AUUUAA,CAAAGA,CAAAUA,CAAGGA,CAAGUA,CCCUCC,CCCUGU,CCUUCU,GCAAAG,GGAAAG,GUAAAG,UAAAGA,UAAAUA,UAAGCA,UAAGGA,UCCUCU,UCCUGC,UCCUGU,UCUUCC,UCUUCU,UCUUGC,UCUUUC,UUGUGC,UUGUGG
SRSF10 2 160 0.13636364 0.0105449306 3.692837 AAAAGA,AAAGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGG,AAGAAA,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGGAA,GAGGAG,GAGGGA,GAGGGG
SRSF2 2 479 0.13636364 0.0314383023 2.116864 AAAAGA,AGAAUA AAAAGA,AAAGAG,AAGAGA,AAGCAG,AAGCUG,AAGGCG,AAUACC,AAUGCU,ACCACC,ACCACU,ACCAGC,ACCAGU,ACCCCC,ACCCCU,ACUCAA,AGAAGA,AGAAGC,AGAAUA,AGAAUG,AGAGAA,AGAGAU,AGAGGA,AGAGGU,AGAGUA,AGAGUG,AGAGUU,AGAUAA,AGAUCC,AGAUGC,AGCACU,AGCAGA,AGCAGU,AGCCGA,AGCCUC,AGCGGA,AGCUGU,AGGAAG,AGGAGA,AGGAGC,AGGAGG,AGGAGU,AGGCAG,AGGCGU,AGGCUG,AGGGUA,AGUAGG,AGUAGU,AGUGAC,AGUGUU,AUGAUG,AUGCUG,AUGGAG,AUUAGU,AUUCCU,AUUGAU,CAGAGA,CAGAGG,CAGAGU,CAGUAG,CAGUGG,CCACCA,CCAGAU,CCAGCC,CCAGCU,CCAGGG,CCAGGU,CCAGUC,CCAGUG,CCAGUU,CCCGCU,CCCGUG,CCGCUA,CCGGUG,CCUCCG,CCUGCG,CCUGCU,CCUGUU,CGAACG,CGAGGA,CGAGUA,CGAGUG,CGAGUU,CGCAGU,CGCUGC,CGUAAG,CGUGCG,CUACCG,CUAGAA,CUCAAG,CUCCAA,CUCCUG,CUCGUG,CUGAUG,GAAAGG,GAAGAA,GAAGCG,GAAGGC,GAAUAC,GAAUCC,GACCCC,GACGGA,GACUCA,GACUGU,GAGAAG,GAGAAU,GAGAGA,GAGAGU,GAGAUA,GAGAUG,GAGCAC,GAGCAG,GAGCUG,GAGGAA,GAGGAC,GAGGAG,GAGUGA,GAUCCC,GAUCCG,GAUGAU,GAUGCU,GAUGGA,GAUUAG,GAUUGA,GCACUG,GCAGAG,GCAGGG,GCAGGU,GCAGUA,GCAGUG,GCCACC,GCCACU,GCCCAC,GCCGAG,GCCGCC,GCCGUU,GCCUCA,GCCUCC,GCGUGU,GCUGUU,GGAACC,GGAAGG,GGAAUG,GGACCG,GGACGC,GGAGAA,GGAGAG,GGAGAU,GGAGCG,GGAGGA,GGAGUG,GGAGUU,GGAUCC,GGAUGG,GGCAGU,GGCCAC,GGCCGC,GGCCUC,GGCGUG,GGCUCC,GGCUCG,GGCUGA,GGCUGC,GGGAAU,GGGAGC,GGGCAG,GGGUAA,GGGUAC,GGGUAG,GGGUAU,GGGUGA,GGUACG,GGUAGG,GGUCAG,GGUUAC,GGUUCC,GGUUGG,GUAAGC,GUAGGC,GUCAGU,GUCGCC,GUCUAA,GUGCAG,GUUAAU,GUUCCC,GUUCCU,GUUCGA,GUUCUG,GUUGGC,GUUUCG,UAAGCU,UACGAG,UACGUG,UAGGCU,UAUGCU,UCACCG,UCAGUG,UCCAGA,UCCAGC,UCCAGG,UCCAGU,UCCUGC,UCCUGU,UCGAGU,UCGUGC,UGAGCU,UGAUCG,UGAUGG,UGCAGA,UGCAGU,UGCCGU,UGCGGU,UGCUGU,UGGAGA,UGGAGG,UGGAGU,UGGCAG,UGUUCC,UUAAUG,UUACUG,UUAGUG,UUCCAG,UUCCCG,UUCCUA,UUCCUG,UUCGAG,UUGUUG
SRSF1 2 625 0.13636364 0.0410007860 1.733736 AAAAGA,AAAGAA AAAAGA,AAAGAA,AAAGAC,AAAGAG,AACAGC,AAGAAC,AAGACC,AAGAGA,AAGAGC,AAGAGG,AAGGAC,AAGGCG,AAGGUG,AAUGAC,AAUUUC,ACAAGG,ACAGAG,ACAGCA,ACAGCG,ACAGGA,ACAGGG,ACAGGU,ACAGUG,ACCCGA,ACCGGA,ACGAAU,ACGGAA,ACUGAG,ACUGGA,AGAAGA,AGAAGG,AGACAA,AGACAG,AGACGU,AGAGAA,AGAGAC,AGAGCA,AGAGGA,AGAGGG,AGAGGU,AGAUGG,AGCAGG,AGCCGA,AGCGGA,AGGAAA,AGGAAC,AGGAAG,AGGACA,AGGACC,AGGACG,AGGACU,AGGAGA,AGGAGC,AGGAGG,AGGUAA,AUGAAC,AUGAAG,AUGACA,AUGACU,AUGGAC,AUGGAG,CAAGGA,CAAUGG,CACAGA,CACAGC,CACAGG,CACAGU,CACCCA,CACCCG,CACCGG,CACGCA,CACGGA,CACUGG,CAGAAC,CAGACA,CAGACG,CAGAGA,CAGAGC,CAGAGG,CAGCCG,CAGUCG,CAUGGU,CCAACC,CCAAGG,CCACCA,CCACCC,CCACGG,CCAGCA,CCAGCC,CCAGCG,CCAGGA,CCAGGG,CCCACC,CCCAGC,CCCAGG,CCCCGC,CCCGGG,CCCGUU,CCCUCC,CCCUCG,CCGAGG,CCGCGA,CCGCUA,CCGGAC,CCGGAG,CCGGGA,CCGUCC,CCGUGC,CCGUGG,CCGUUU,CCUAGG,CCUCCG,CCUCGA,CCUGCG,CCUGGA,CCUGGG,CGAACG,CGAAGC,CGAGGA,CGAGGC,CGAGGG,CGAUGG,CGCAGC,CGCCGC,CGCUAU,CGCUGC,CGGAAU,CGGACA,CGGAGC,CGGAGG,CGGCGG,CGGGCA,CGGUGC,CGGUGG,CGUGCG,CGUGGA,CGUGGG,CUCAGG,CUCGUG,CUGAAC,CUGAGU,GAAAGA,GAAAGG,GAACAG,GAAGAA,GAAGAG,GAAGAU,GAAGCA,GAAGCC,GAAGCU,GAAGGA,GAAGGC,GAAGGU,GAAUGA,GACAGA,GACAGG,GACCCA,GACGAA,GACGAC,GACGGA,GACUGA,GAGAAC,GAGAAG,GAGACA,GAGACG,GAGCAG,GAGGAA,GAGGAC,GAGGAG,GAGGAU,GAGGCA,GAGGGA,GAGGGC,GAGGGG,GAGGUA,GAUGAA,GAUGAC,GAUGAU,GAUGCA,GAUGCC,GAUGCU,GAUGGA,GAUGGC,GCACGG,GCAGCA,GCAGCG,GCAGGA,GCAGGC,GCAGGG,GCAGGU,GCCCAC,GCCCGG,GCCCGU,GCGCAA,GCGCCA,GCGCCC,GCGCGG,GCGGAC,GCGGCG,GCGGUU,GCUGGG,GGAAAG,GGAACA,GGAAGA,GGAAGG,GGAAUG,GGACAA,GGACAG,GGACCA,GGACCG,GGACGA,GGAGAA,GGAGAC,GGAGAU,GGAGCA,GGAGCG,GGAGCU,GGAGGA,GGAGGC,GGAGGG,GGAGGU,GGAUAU,GGAUGA,GGAUUC,GGCACA,GGCAGA,GGCCGA,GGCGCA,GGGACG,GGGCCG,GGGGAA,GGGGAG,GGGGCA,GGGGCG,GGGGGA,GGGUAC,GGUCCA,GGUCCG,GGUGAA,GGUGCA,GGUGCC,GGUGCG,GGUGCU,GGUGGA,GGUGGC,GGUGGG,GGUGGU,GUAGGA,GUGACA,UAGACA,UAGGAC,UCAAGA,UCAGGU,UCGGGC,UGAACA,UGAAGA,UGAAGC,UGAAGG,UGACAG,UGACGA,UGACUG,UGAGUU,UGAUGA,UGAUGG,UGGACA,UGGAGA,UGGAGC,UGGAGG,UGGUGC,UGUAGG,UUCAAG

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ESRP1 1 46 0.004761905 0.0002367997 4.329800 AGGGAU AGGGAU
HNRNPA1L2 4 188 0.011904762 0.0009522370 3.644074 GUAGGG,UAGGGA,UUAGGG AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
HNRNPM 4 222 0.011904762 0.0011235389 3.405417 AAGGAA,GAAGGA,GGGGGG AAGGAA,GAAGGA,GGGGGG
RBMS1 2 217 0.007142857 0.0010983474 2.701167 AUAUAG,UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
NONO 4 364 0.011904762 0.0018389762 2.694564 AGAGGA,AGGAAC,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SNRNP70 2 253 0.007142857 0.0012797259 2.480666 GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
RBM28 3 340 0.009523810 0.0017180572 2.470761 AGUAGA,GUGUAG,UGUAGG AGUAGA,AGUAGG,AGUAGU,GAGUAG,GUGUAG,UGUAGA,UGUAGG,UGUAGU
A1CF 6 598 0.016666667 0.0030179363 2.465331 AGUAUA,AUAAUU,CAGUAU,UAAUUG,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
IGF2BP1 1 173 0.004761905 0.0008766626 2.441445 CACCCG AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AGAAGA AAAAGA,AGAAGA
AKAP1 1 221 0.004761905 0.0011185006 2.089973 UAUAUA AUAUAU,UAUAUA
CPEB4 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
DDX19B 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
EIF4A3 5 691 0.014285714 0.0034864974 2.034723 UUUUUU UUUUUU
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAUACU AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
CPEB2 11 1487 0.028571429 0.0074969770 1.930192 AUUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPCL1 10 1381 0.026190476 0.0069629182 1.911278 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
KHDRBS2 7 1051 0.019047619 0.0053002821 1.845470 AAUAAA,AUAAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
HNRNPC 14 2006 0.035714286 0.0101118501 1.820454 AUUUUU,CUUUUU,GGGGGG,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RALY 7 1117 0.019047619 0.0056328094 1.757684 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
SRSF4 3 558 0.009523810 0.0028164047 1.757684 AGAAGA,GAGGAA AAGAAG,AGAAGA,AGGAAG,GAAGAA,GAGGAA,GGAAGA
RBMS3 3 562 0.009523810 0.0028365578 1.747397 AUAUAG,UAUAGA,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
AGO1 1 283 0.004761905 0.0014308746 1.734641 GAGGUA AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
HNRNPA2B1 13 2033 0.033333333 0.0102478839 1.701640 AAGGAA,AAGGAG,AGGAAC,GAAGGA,GACUAG,GGAACC,GUAGGG,UAGGGA,UUAGGG,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
ENOX1 4 756 0.011904762 0.0038139863 1.642167 AAUACA,AGGACA,AUACAG,GGACAG AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
PUM2 4 764 0.011904762 0.0038542926 1.627001 GUAAAU,GUAUAU,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
U2AF2 6 1071 0.016666667 0.0054010480 1.625654 UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 AAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
TRA2A 6 1133 0.016666667 0.0057134220 1.544539 AAGAGG,AGAAGA,AGAGGA,GAAGAG,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
HNRNPU 6 1136 0.016666667 0.0057285369 1.540727 GGGGGG,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACUU,UACUUG AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
SYNCRIP 5 1041 0.014285714 0.0052498992 1.444212 UUUUUU AAAAAA,UUUUUU
HNRNPA3 1 349 0.004761905 0.0017634019 1.433177 AAGGAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
NOVA1 7 1428 0.019047619 0.0071997179 1.403598 AUCACC,GGGGGG,UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 7 1434 0.019047619 0.0072299476 1.397554 AUCACC,GGGGGG,UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAUACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPH3 12 2496 0.030952381 0.0125806127 1.298848 AAUGUG,AGGGAA,GAAUGU,GGAAGG,GGAAUG,GGAGGA,GGGAAG,GGGAGG,GGGGAG,GGGGGG AAGGGA,AAGGUG,AAUGUG,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CGAGGG,CGGGCG,CGGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGUG,UGUGGG,UUGGGU
MSI1 4 961 0.011904762 0.0048468360 1.296424 AGGAGG,AGGUGG,UAGGUG,UAGUAG AGGAAG,AGGAGG,AGGUAG,AGGUGG,AGUAAG,AGUAGG,AGUUAG,AGUUGG,UAGGAA,UAGGAG,UAGGUA,UAGGUG,UAGUAA,UAGUAG,UAGUUA,UAGUUG
CELF4 3 776 0.009523810 0.0039147521 1.282618 GGUGUG,GUGUUU,UGUGUU GGUGUG,GGUGUU,GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
KHDRBS1 9 1945 0.023809524 0.0098045143 1.280021 AUAAAA,UAAAAA,UUAAAA,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
CSTF2 4 1022 0.011904762 0.0051541717 1.207726 GUGUUU,GUUUUG,UGUGUU,UGUUUU GUGUGU,GUGUUG,GUGUUU,GUUUUG,UGUGUG,UGUGUU,UGUUUG,UGUUUU
KHDRBS3 7 1646 0.019047619 0.0082980653 1.198764 AAUAAA,AUAAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGGAA,AGAAGA,AGGAAA,GAAGGA,GGAAGG AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
SFPQ 33 7087 0.080952381 0.0357114067 1.180689 AAGAGG,AAGGAA,AGAGAG,AGAGGA,AGAGGU,AGGAAC,AGGGAU,GAAGAG,GAAGGA,GAGGAA,GAGGAC,GAGGUA,GGAGGA,GGGGGA,GGGGGG,UAAUGU,UAAUUG,UAAUUU,UGAUGU,UGAUUU,UGGUCU,UGGUUU,UUAAUU,UUGAUU,UUGGUU,UUUUUU AAGAAC,AAGAGC,AAGAGG,AAGCAA,AAGGAA,AAGGAC,AAGGGA,ACUGGG,AGAGAG,AGAGGA,AGAGGU,AGAUCG,AGGAAC,AGGACC,AGGGAU,AGGGGG,AUCGGA,CAGGCA,CUAAGG,CUGGAG,CUGGGA,GAAGAA,GAAGAG,GAAGCA,GAAGGA,GACUGG,GAGAGG,GAGGAA,GAGGAC,GAGGUA,GAUCGG,GCAGGC,GGAAGA,GGACUG,GGAGAG,GGAGGA,GGAGGG,GGGAUC,GGGGAC,GGGGAU,GGGGGA,GGGGGG,GGUAAG,GGUCUG,GUAAGA,GUAAUG,GUAAUU,GUAGUG,GUAGUU,GUCUGG,GUGAUG,GUGAUU,GUGGUG,GUGGUU,UAAGAG,UAAGGA,UAAGGG,UAAUGG,UAAUGU,UAAUUG,UAAUUU,UAGAGA,UAGAUC,UAGGGG,UAGUGG,UAGUGU,UAGUUG,UAGUUU,UCGGAA,UCUAAG,UCUGGA,UGAAGC,UGAUGG,UGAUGU,UGAUUG,UGAUUU,UGCAGG,UGGAAG,UGGAGA,UGGAGC,UGGAGG,UGGUCU,UGGUGG,UGGUGU,UGGUUG,UGGUUU,UUAAUG,UUAAUU,UUAGUG,UUAGUU,UUGAAG,UUGAUG,UUGAUU,UUGGUG,UUGGUU,UUUUUU
HNRNPF 15 3360 0.038095238 0.0169336961 1.169714 AAUGUG,AGGGAA,AGGGAU,GAAUGU,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGAAG,GGGAGG,GGGGAG,GGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGAU,AGGGGA,AUGGGA,AUGGGG,AUGUGG,CGAUGG,CGGGAU,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GAUGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGAUGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGAUG,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGGUA,UGGGAA,UGGGGU,UGUGGG
HNRNPH1 15 3406 0.038095238 0.0171654575 1.150102 AAUGUG,AGGGAA,GAAUGU,GAGGAA,GGAAGG,GGAAUG,GGAGGA,GGGAAG,GGGAGG,GGGGAG,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGAAG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAGGU,GAAUGU,GAGGAA,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
HNRNPH2 14 3198 0.035714286 0.0161174929 1.147874 AAUGUG,AGGGAA,GAAUGU,GGAAGG,GGAAUG,GGAGGA,GGGAAG,GGGAGG,GGGGAG,GGGGGA,GGGGGG,UGGGGG AAGGCG,AAGGGA,AAGGGG,AAGGUG,AAUGUG,AGGCGA,AGGGAA,AGGGGA,AUCGGG,AUGUGG,AUUGGG,CAGGAC,CGAGGG,CGGGCG,CGGGGG,CUGGGG,GAAGGG,GAAUGU,GAGGGG,GGAAGG,GGAAUG,GGAGGA,GGAGGG,GGCGAA,GGGAAG,GGGAAU,GGGAGG,GGGCGU,GGGCUG,GGGGAA,GGGGAG,GGGGCU,GGGGGA,GGGGGC,GGGGGG,GGGUCG,GGGUGU,GGUCGA,GUCGAG,UCGAGG,UCGGGC,UGGGGG,UGGGGU,UGGGUG,UGUGGG,UUGGGU
ZNF638 2 646 0.007142857 0.0032597743 1.131729 GGUUGG,GUUGGU CGUUCG,CGUUCU,CGUUGG,CGUUGU,GGUUCG,GGUUCU,GGUUGG,GGUUGU,GUUCGU,GUUCUU,GUUGGU,GUUGUU,UGUUCG,UGUUCU,UGUUGG,UGUUGU
RBMX 5 1316 0.014285714 0.0066354293 1.106311 AAGGAA,AAGUGU,GAAGGA,GGAAGG AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
DAZAP1 12 2878 0.030952381 0.0145052398 1.093476 AGGAAA,AGGUAA,AGGUUG,AGUAUA,GGGGGG,UAGUAU,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUU,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAG AAAAAA,AAAAAG
RBM5 9 2359 0.023809524 0.0118903668 1.001746 AAGGAA,AAGGAG,AAGGUA,AGGGAA,AGGUAA,GAAGGA,GGGGGG,UCUUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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