ENSG00000102189:-:12:92809016:92813093

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000102189:-:12:92809016:92813093 ENSG00000102189 ENST00000322349 - 12 92809017 92813093 410 AUUAAAGCCAAAACCGAACUAUUACUAUCAGCAGAAGCAGCAAAAACUGCUCAAAGAGCUGAUCUUCAGAAUCAUUUGGACACAGCUCAAAAUGCAUUACAAGAUAAACAGCAGGAGUUAAAUAAGAUUACUACUCAGUUGGAUCAGGUCACUGCAAAGUUACAAGACAAGCAAGAACAUUGCAGUCAGCUGGAAAGUCAUCUUAAAGAAUAUAAAGAGAAAUACCUCUCUUUAGAACAGAAAACCGAAGAGCUAGAAGGUCAAAUUAAGAAACUAGAAGCUGAUAGUCUUGAAGUUAAAGCAAGCAAGGAGCAGGCUUUGCAAGAUCUACAACAGCAAAGACAGCUGAACACAGAUUUAGAGCUCAGAGCCACAGAAUUGAGUAAACAACUUGAAAUGGAGAAGGAAAUAUUAAAGCCAAAACCGAACUAUUACUAUCAGCAGAAGCAGCAAAAACUGC circ
ENSG00000102189:-:12:92809016:92813093 ENSG00000102189 ENST00000322349 - 12 92809017 92813093 22 GAGAAGGAAAUAUUAAAGCCAA bsj
ENSG00000102189:-:12:92809016:92813093 ENSG00000102189 ENST00000322349 - 12 92813084 92813293 210 CAGCAUUAUUAGGAGUCUUCUCCCCUAUCAUUCCUAUUUUGGCGAUUUUCACAUACAUAUUUUUCAAUAUAUAAAUCCAUAUGUUUUUGCCAAGGACUUAAUUUUUAAAUAGUUUGUUUAGUCACAAAAGGAGUGUGCGUUCAAGCAAGAGGAAAUCAAGAACUAAAUAUAAAUUAAAUAAUUUGUAAAUGCUGUUACAGAUUAAAGCCA ie_up
ENSG00000102189:-:12:92809016:92813093 ENSG00000102189 ENST00000322349 - 12 92808817 92809026 210 AGAAGGAAAUGUAAGCUAAACCACUUUACUUACAAAUUAAGGGAAAAGAUUGUGAACUAAGUAUUAAAAUUUCCUUCAGAUUUAAAUUUUGCUAUCGUAGUGCUUAAAGACUUAUUAGAUAUUUAUUUUGUGUUGAUUUUAUAAACUGAUGUUAAUGUGAAUGAAAAAAUAAAGCCAUCAUAAUAGGGUUAAACUUCUCUAGAAAGGACU ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 3 489 0.009756098 0.0007101099 3.780190 ACAAGA,CAAGAC ACAAGA,CAAGAC
PTBP2 1 267 0.004878049 0.0003883867 3.650739 CUCUCU CUCUCU
MATR3 2 739 0.007317073 0.0010724109 2.770409 AUCUUA,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
PABPC3 4 1234 0.012195122 0.0017897669 2.768461 AAAAAC,AAAACC,GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
SNRPB2 3 991 0.009756098 0.0014376103 2.762632 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
HNRNPAB 6 1782 0.017073171 0.0025839306 2.724092 AAAGAC,AAGACA,AGACAA,CAAAGA AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
ERI1 1 632 0.004878049 0.0009173461 2.410766 UUCAGA UUCAGA,UUUCAG
HNRNPM 2 999 0.007317073 0.0014492040 2.336006 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
TUT1 1 678 0.004878049 0.0009840095 2.309560 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
YBX2 3 1480 0.009756098 0.0021462711 2.184472 AACAAC,ACAACA,ACAACU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
EIF4B 2 1179 0.007317073 0.0017100607 2.097219 GUUGGA,UUGGAC CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
KHDRBS3 7 3429 0.019512195 0.0049707696 1.972835 AAAUAA,AGAUAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAUA AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
HNRNPA3 3 2140 0.009756098 0.0031027457 1.652759 AAGGAG,AGGAGC,CAAGGA AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
ZCRB1 2 1605 0.007317073 0.0023274215 1.652534 AAUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
RBM3 3 2152 0.009756098 0.0031201361 1.644695 AAAACU,AAACUA,GAAACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
QKI 4 2805 0.012195122 0.0040664663 1.584457 AAUCAU,AUCUAC,CUACUC,UACUCA AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
PABPC5 3 2400 0.009756098 0.0034795387 1.487408 AGAAAA,AGAAAU,GAAAGU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
TRA2B 11 7329 0.029268293 0.0106226650 1.462193 AAAGAA,AAGAAC,AAGAAU,AAGGAA,AAUAAG,AGAAGG,AGGAAA,AUAAGA,GAAGGA,UAAGAA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
KHDRBS2 2 1858 0.007317073 0.0026940701 1.441479 AUAAAC,GAUAAA AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
ENOX1 4 3195 0.012195122 0.0046316558 1.396704 AAGACA,AGACAG,UGGACA AAGACA,AAUACA,AGACAG,AGGACA,AGUACA,AUACAG,CAGACA,CAUACA,CGGACA,CGUACA,GGACAG,GUACAG,UAGACA,UAUACA,UGGACA,UGUACA
RBMS3 1 1283 0.004878049 0.0018607779 1.390398 AAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
SART3 3 2634 0.009756098 0.0038186524 1.353241 AAAAAC,AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
PUM1 7 5823 0.019512195 0.0084401638 1.209033 AAUAUU,AGAAUU,AGAUAA,CAGAAU,GAAUUG,UAAAUA AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
SRSF10 16 13860 0.041463415 0.0200874160 1.045547 AAAGAA,AAAGAC,AAAGAG,AAGAAA,AAGACA,AAGAGA,AAGGAA,AAGGAG,AGACAA,AGAGAA,CAAAGA,GAGAAA,GAGAAG AAAAGA,AAAGAA,AAAGAC,AAAGAG,AAAGGA,AAAGGG,AAGAAA,AAGAAG,AAGACA,AAGAGA,AAGAGG,AAGGAA,AAGGAG,AAGGGA,AAGGGG,ACAAAG,AGACAA,AGAGAA,AGAGAC,AGAGAG,AGAGGA,AGAGGG,CAAAGA,GAAAGA,GACAAA,GAGAAA,GAGAAC,GAGAAG,GAGACA,GAGACC,GAGACG,GAGAGA,GAGAGC,GAGAGG,GAGGAA,GAGGAG,GAGGGA,GAGGGG
RBMX 5 4925 0.014634146 0.0071387787 1.035589 AAGGAA,AGAAGG,GAAGGA,UCAAAA AAGAAG,AAGGAA,AAGUAA,AAGUGU,ACCAAA,AGAAGG,AGGAAG,AGUAAC,AGUGUU,AUCAAA,AUCCCA,AUCCCC,GAAGGA,GGAAGG,GUAACA,UAACAA,UAAGAC,UCAAAA
A1CF 1 1642 0.004878049 0.0023810421 1.034711 GAUCAG AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
PUM1 1 16 0.09090909 0.001113440 6.351329 AAUAUU AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAUAA,CAGAAU,GUAAAU,GUCCAG,UAAAUA,UAUAUA,UGUAAA,UGUAGA,UGUAUA,UUAAUG
PPIE 4 61 0.22727273 0.004060781 5.806524 AAAUAU,AAUAUU,AUAUUA,UAUUAA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAU,AUAAUA,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUUAA,UAAAAA,UAAAUA,UAAAUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUUU,UUAAAA,UUAAAU,UUAUUA

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBM42 3 103 0.009523810 0.0005239823 4.183949 AACUAA,ACUAAG AACUAA,AACUAC,ACUAAG,ACUACG
SNRNP70 4 253 0.011904762 0.0012797259 3.217632 AAUCAA,AUCAAG,GUUCAA,UUCAAG AAUCAA,AUCAAG,AUUCAA,GAUCAA,GUUCAA,UUCAAG
HNRNPA1L2 2 188 0.007142857 0.0009522370 2.907109 AUAGGG,UAGGGU AUAGGG,GUAGGG,UAGGGA,UAGGGU,UUAGGG
ZCRB1 9 666 0.023809524 0.0033605401 2.824774 AAUUAA,ACUUAA,AUUUAA,GACUUA,GAUUAA,GAUUUA,GCUUAA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA
HNRNPA3 4 349 0.011904762 0.0017634019 2.755106 AAGGAG,CAAGGA,CCAAGG,GCCAAG AAGGAG,AGGAGC,CAAGGA,CCAAGG,GCCAAG,GGAGCC
AKAP1 2 221 0.007142857 0.0011185006 2.674935 AUAUAU,UAUAUA AUAUAU,UAUAUA
HNRNPM 2 222 0.007142857 0.0011235389 2.668451 AAGGAA,GAAGGA AAGGAA,GAAGGA,GGGGGG
PUM2 8 764 0.021428571 0.0038542926 2.474998 GUAAAU,UAAAUA,UACAUA,UAGAUA,UAUAUA,UGUAAA GUAAAU,GUACAU,GUAGAU,GUAUAU,UAAAUA,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUACA,UGUAGA,UGUAUA
PABPN1 1 178 0.004761905 0.0009018541 2.400573 AAAAGA AAAAGA,AGAAGA
RBM6 1 191 0.004761905 0.0009673519 2.299426 AAUCCA AAUCCA,AUCCAA,AUCCAG,CAUCCA,UAUCCA
HNRNPA0 1 200 0.004761905 0.0010126965 2.233337 AGAUAU AAUUUA,AGAUAU,AGUAGG
RBMS1 1 217 0.004761905 0.0010983474 2.116204 UAUAUA AUAUAC,AUAUAG,GAUAUA,UAUAUA
RBMS3 4 562 0.011904762 0.0028365578 2.069326 AAUAUA,AUAUAU,UAUAUA AAUAUA,AUAUAG,AUAUAU,CAUAUA,CUAUAG,CUAUAU,UAUAGA,UAUAGC,UAUAUA,UAUAUC
ERI1 1 228 0.004761905 0.0011537686 2.045185 UUCAGA UUCAGA,UUUCAG
NONO 2 364 0.007142857 0.0018389762 1.957598 AGAGGA,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SSB 3 505 0.009523810 0.0025493753 1.901395 GCUGUU,UGCUGU,UGUUUU CUGUUU,GCUGUU,UGCUGU,UGUUUU
KHDRBS3 12 1646 0.030952381 0.0082980653 1.899203 AAAUAA,AAUAAA,AUAAAC,AUAAAG,AUUAAA,UAAAUA,UUAAAC AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
PPIE 70 9262 0.169047619 0.0466696896 1.856872 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUUAA,AAUUUU,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUU,AUUAAA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAU,UAAAUA,UAAAUU,UAAUUU,UAUAAA,UAUAUA,UAUUAA,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUU,UUAUAA,UUAUUA,UUAUUU,UUUAAA,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
ZFP36L2 4 774 0.011904762 0.0039046755 1.608264 AUUUAU,UAUUUA,UUAUUU,UUUAUU AUUUAU,UAUUUA,UUAUUU,UUUAUU
RBM46 6 1091 0.016666667 0.0055018138 1.598986 AAUCAA,AAUGAA,AUCAAG,AUCAUA,AUCAUU,AUGAAA AAUCAA,AAUCAU,AAUGAA,AAUGAU,AUCAAA,AUCAAG,AUCAAU,AUCAUA,AUCAUG,AUCAUU,AUGAAA,AUGAAG,AUGAAU,AUGAUA,AUGAUG,AUGAUU,GAUCAA,GAUCAU,GAUGAA,GAUGAU
HNRNPA2B1 12 2033 0.030952381 0.0102478839 1.594724 AAGGAA,AAGGAG,AGAUAU,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CCAAGG,GAAGGA,GCCAAG,UAGGGU,UUUAUA AAGAAG,AAGGAA,AAGGAG,AAGGGG,AAUUUA,ACUAGA,AGAAGC,AGACUA,AGAUAU,AGGAAC,AGGAGC,AGGGGC,AGUAGG,AUAGCA,AUAGGG,AUUUAA,CAAGAA,CAAGGA,CAAGGG,CCAAGA,CCAAGG,CGAAGG,CUAGAC,GAAGCC,GAAGGA,GACUAG,GCCAAG,GCGAAG,GGAACC,GGAGCC,GGGGCC,GUAGGG,UAGACA,UAGACU,UAGGGA,UAGGGU,UUAGGG,UUUAUA
RBM41 2 502 0.007142857 0.0025342604 1.494937 AUACAU,UUACUU AUACAU,AUACUU,UACAUG,UACAUU,UACUUG,UACUUU,UUACAU,UUACUU
AGO2 3 677 0.009523810 0.0034159613 1.479247 AAAAAA,AGUGCU,GUGCUU AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
TARDBP 5 1034 0.014285714 0.0052146312 1.453936 GAAUGA,GUGAAU,UGAAUG,UUUUGC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC
TIAL1 31 5597 0.076190476 0.0282043531 1.433693 AAAUUU,AAUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,GUUUUU,UAAAUU,UAUUUU,UUAAAU,UUAUUU,UUUAAA,UUUAUU,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
IGHMBP2 1 350 0.004761905 0.0017684401 1.429061 AAAAAA AAAAAA
HNRNPAB 1 351 0.004761905 0.0017734784 1.424957 AAAGAC AAAGAC,AAGACA,ACAAAG,AGACAA,AUAGCA,CAAAGA,GACAAA
HNRNPD 7 1488 0.019047619 0.0075020153 1.344261 AAAAAA,AGAUAU,AUUUAU,UAUUUA,UUAGGA,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
PUM1 10 2172 0.026190476 0.0109482064 1.258348 GUAAAU,UAAAUA,UAAUGU,UACAUA,UAGAUA,UAUAUA,UGUAAA,UUAAUG AAUAUU,AAUGUU,AAUUGU,ACAUAA,AGAAUU,AGAUAA,AUUGUA,CAGAAU,CCAGAA,CUUGUA,GAAUUG,GUAAAU,GUAAUA,GUACAU,GUAGAU,GUAUAU,GUCCAG,UAAAUA,UAAUAU,UAAUGU,UACAUA,UACAUC,UAGAUA,UAUAUA,UGUAAA,UGUAAU,UGUACA,UGUAGA,UGUAUA,UGUCCA,UUAAUG,UUGUAC,UUGUAG,UUUAAU
A1CF 2 598 0.007142857 0.0030179363 1.242939 AUAAUU,UUAAUU AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
HNRNPL 6 1419 0.016666667 0.0071543732 1.220068 AAAUAA,AAUAAA,ACAUAC,CACAAA,CAUACA AAACAA,AAACAC,AAAUAA,AAAUAC,AACAAA,AACACA,AAUAAA,AAUACA,ACACAA,ACACAC,ACACCA,ACACGA,ACAUAA,ACAUAC,ACCACA,CACAAA,CACAAC,CACAAG,CACACA,CACACC,CACCAC,CACGAA,CACGAC,CACGAG,CAUAAA,CAUACA
TRA2B 6 1447 0.016666667 0.0072954454 1.191898 AAGAAC,AAGGAA,AGAAGG,AGGAAA,GAAGGA AAAGAA,AAGAAC,AAGAAG,AAGAAU,AAGGAA,AAUAAG,AGAAGA,AGAAGG,AGGAAA,AGGAAG,AUAAGA,GAAAGA,GAAGAA,GAAGGA,GAAUUA,GGAAGG,UAAGAA
ELAVL1 15 3309 0.038095238 0.0166767432 1.191773 AUUUAU,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGUUUU,UUAUUU,UUGAUU,UUGUUU,UUUAGU,UUUAUU,UUUGUU,UUUUUG AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
ELAVL3 8 1928 0.021428571 0.0097188634 1.140676 AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
RBM5 10 2359 0.026190476 0.0118903668 1.139249 AAAAAA,AAGGAA,AAGGAG,AGGGAA,CAAGGA,CUUCUC,GAAGGA,UCUUCU,UUCUCU AAAAAA,AAGGAA,AAGGAG,AAGGGG,AAGGUA,AAGGUG,AGGGAA,AGGGAG,AGGGUA,AGGGUG,AGGUAA,CAAGGA,CAAGGG,CCCCCC,CUCUUC,CUUCUC,GAAGGA,GAAGGG,GAAGGU,GAGGGA,GAGGGU,GGGGGG,GGUGGU,UCUUCU,UUCUCU
CELF1 4 1097 0.011904762 0.0055320435 1.105654 GUGUUG,GUUUGU,UGUGUU,UUGUGU CUGUCU,GUGUGU,GUGUUG,GUUGUG,GUUUGU,UGUCUG,UGUGUG,UGUGUU,UGUUGU,UGUUUG,UUGUGU
CELF5 2 669 0.007142857 0.0033756550 1.081334 GUGUUG,UGUGUU GUGUGG,GUGUGU,GUGUUG,GUGUUU,UGUGUG,UGUGUU
TRA2A 4 1133 0.011904762 0.0057134220 1.059112 AAGAGG,AGAAAG,AGAGGA,GAGGAA AAAGAA,AAGAAA,AAGAAG,AAGAGG,AGAAAG,AGAAGA,AGAGGA,AGGAAG,GAAAGA,GAAGAA,GAAGAG,GAGGAA
PABPC4 1 462 0.004761905 0.0023327287 1.029520 AAAAAA AAAAAA,AAAAAG
ELAVL2 41 9826 0.100000000 0.0495112858 1.014171 AAUUUG,AAUUUU,AUAUUU,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,GAUUUA,GAUUUU,GUUUUU,UAAUUU,UAUAUA,UAUGUU,UAUUUA,UAUUUU,UGAUUU,UUAAUU,UUACUU,UUAUUU,UUGAUU,UUUACU,UUUAGU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUC,UUUUUG AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
HNRNPA1 26 6340 0.064285714 0.0319478033 1.008781 AAAAAA,AAGAGG,AAGGAG,AGAGGA,AGAUAU,AGAUUA,AGGGUU,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAGGA,CCAAGG,GACUUA,GAGGAA,GCCAAG,GGACUU,GGGUUA,GUUUAG,UAAGUA,UAGGGU,UUAGAU,UUAUUU,UUUAUA,UUUAUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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