ENSG00000173889:-:3:170122590:170129552

1. Sequences

id gene transcript strand chrom startGR endGR length seq type
ENSG00000173889:-:3:170122590:170129552 ENSG00000173889 ENST00000495893 - 3 170122591 170129552 1023 CUUCAUAUUCUCCAAUUCAGCCUCAUUCUCUAAUAAAACAUCAGCAGAUUCCUCUUCAUUCACCACCUUCCAAAGUUUCCCAUCAUCAGCUGAUAUUACAACAGCAGCAACAGCAAAUUCAGCCAAUCACACUUCAGAAUUCAACUCAAGACCCACCCCCAUCCCAGCACUGUAUACCACUCCAGAACCAUGGCCUUCCUCCAGCUCCCAGUAAUGCCCAGUCACAGCAUUGUUCACCGAUUCAGAGUCAUCCCUCUCCUUUAACAGUGUCUCCUAAUCAGUCACAGUCAGCACAGCAGUCUGUAGUGGUGUCUCCUCCACCACCUCAUUCACCAAGUCAGUCUCCUACUAUAAUUAUUCAUCCACAAGCACUUAUUCAGCCACACCCUCUUGUGUCAUCAGCUCUCCAGCCAGGGCCAAAUUUGCAGCAGUCCACUGCUAAUCAGGUGCAAGCUACAGCACAGUUGAAUCUUCCAUCCCAUCUUCCACUUCCAGCUUCCCCUGUUGUACACAUUGGCCCAGUUCAGCAGUCUGCCUUGGUAUCCCCAGGCCAGCAGAUUGUCUCUCCAUCACACCAGCAAUAUUCAUCCCUGCAGUCCUCUCCAAUCCCAAUUGCAAGUCCUCCACAGAUGUCGACAUCUCCUCCAGCUCAGAUUCCACCACUGCCCUUGCAGUCUAUGCAGUCUUUACAAGUGCAGCCUGAAAUUCUGUCCCAGGGCCAGGUUUUGGUGCAGAAUGCUUUGGUGUCAGAAGAGGAACUUCCAGCUGCAGAAGCUUUGGUCCAGUUGCCAUUUCAGACUCUUCCUCCUCCACAGACUGUUGCGGUAAACCUACAAGUGCAACCACCAGCACCUGUUGAUCCACCAGUGGUUUAUCAGGUAGAAGAUGUGUGUGAAGAAGAAAUGCCAGAAGAGUCAGAUGAAUGUGUCCGGAUGGAUAGAACCCCACCACCACCCACUUUGUCUCCAGCAGCUAUAACAGUGGGGAGAGGAGAAGAUUUGACUUCUGAACAUCCUUUGUUAGCUUCAUAUUCUCCAAUUCAGCCUCAUUCUCUAAUAAAACAUCAGCAGAUU circ
ENSG00000173889:-:3:170122590:170129552 ENSG00000173889 ENST00000495893 - 3 170122591 170129552 22 UCCUUUGUUAGCUUCAUAUUCU bsj
ENSG00000173889:-:3:170122590:170129552 ENSG00000173889 ENST00000495893 - 3 170129543 170129752 210 ACCCCAGCCUGGGUGACAAGAGCAAGACUCUGUCUCAAAAAAAAAAAUUUUUUUUUUUUCAAAUUACUCUUGUUUGGAAAACUUGUAAUAGAAUUCUGAUGAUUAUGACCUUCUGAUAAUGAACACUUUUUCCUUUAGAGUGAUUUAAAAAUUUCUGUAUUUUUGAAAUCAGUACUAAUUGUCAUUUUUUUCUCUCACAGCUUCAUAUUC ie_up
ENSG00000173889:-:3:170122590:170129552 ENSG00000173889 ENST00000495893 - 3 170122391 170122600 210 CCUUUGUUAGGUGAGAAAAUACCAAAAUUUGUGGGAAUUUUUCUAUUUGAUAAAUGUUAAUAAUAGGAAAAGUUGAUUUUUUUCCCUUUCCUCCUUUCACCCUUUUUGUAGCUGGAACUACAGGUGCACACCAUUACAGCUGGCUGAUUUUUUAUUUUUUAUGGUGACGAGGUUUUACUAUGUUGCUUAGGCUGGUCUUGAACUACUGGC ie_down
  • Note:
    • id: unique identifier.
    • gene: represents the gene from which the circRNA arises.
    • transcript: transcript whose exon coordinates overlap with the detected back-spliced junction coordinate and used in the downstream analysis.
    • strand: is the strand from which the gene is transcribed.
    • chrom: is the chromosome from which the circRNA is derived.
    • startGR: is the 5’ coordinate of the genomic range from which the sequence are extracted.
    • endGR: is the 3’ coordinate of the genomic range from which the sequence are extracted.
    • length: length of the extracted sequences.
    • seq: sequence used in the downstream analysis.
    • type: type of sequences retrieved. If type = “circ” the sequences derive from the internal circRNA sequences. If type = “bsj” the sequences derive from the back spliced junctions (BSJ). If type = “ie_up” the Intron or Exon sequences derive from the up-stream of BSJ up to 210 bp. If type = “ie_down” the Intron or Exon sequences derive from the down-stream of BSJ up to 210 bp.

2. RNA Binding Proteins Analysis

RBP on full sequence

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
ERI1 4 632 0.004887586 0.0009173461 2.413584 UUCAGA,UUUCAG UUCAGA,UUUCAG
SNRPB2 6 991 0.006842620 0.0014376103 2.250876 AUUGCA,UGCAGU,UUGCAG AUUGCA,GUAUUG,UAUUGC,UGCAGU,UUGCAG
YBX1 46 7119 0.045943304 0.0103183321 2.154645 AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCU,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,GUCUGC,UCCAGC,UGCGGU AACAUC,AACCAC,ACACCA,ACAUCA,ACAUCG,ACAUCU,ACCACA,ACCACC,AUCAUC,CAACCA,CACACC,CACCAC,CAGCAA,CAUCAU,CAUCGC,CAUCUG,CCACAA,CCACAC,CCACCA,CCAGCA,CCCUGC,CCUGCG,CUGCGG,GAUCUG,GCCUGC,GGUCUG,GUCUGC,UCCAGC,UGCGGU
NOVA1 22 3872 0.022482893 0.0056127669 2.002044 ACCACC,AGCACC,AGUCAC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,UCAGUC,UCAUUC,UUCAUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
PABPN1 5 1222 0.005865103 0.0017723764 1.726471 AGAAGA AAAAGA,AGAAGA
CELF2 8 1886 0.008797654 0.0027346479 1.685764 AUGUGU,GUCUGU,GUGUGU,UGUGUG,UGUUGU,UUGUGU AUGUGU,GUAUGU,GUCUGU,GUGUGU,GUUGUU,UAUGUG,UAUGUU,UGUGUG,UGUUGU,UUGUGU
RBMY1A1 1 489 0.001955034 0.0007101099 1.461080 CAAGAC ACAAGA,CAAGAC
MATR3 2 739 0.002932551 0.0010724109 1.451299 AAUCUU,CAUCUU AAUCUU,AUCUUA,AUCUUG,CAUCUU
YBX2 5 1480 0.005865103 0.0021462711 1.450324 AACAUC,ACAACA,ACAUCA,ACAUCU AACAAC,AACAUC,ACAACA,ACAACG,ACAACU,ACAUCA,ACAUCG,ACAUCU
NONO 5 1498 0.005865103 0.0021723567 1.432895 AGAGGA,AGGAAC,GAGAGG,GAGGAA AGAGGA,AGGAAC,GAGAGG,GAGGAA
SRSF3 65 16536 0.064516129 0.0239654858 1.428702 ACAUCA,ACCACC,ACUUCA,ACUUCU,AUCAUC,AUCUUC,AUUCAU,CACCAC,CACUUC,CAUCAC,CAUCAU,CAUUCA,CCACCA,CCUCUU,CUACAA,CUACAG,CUCCAA,CUCUUC,CUUCAG,CUUCAU,GACUUC,GCUUCA,UACAAC,UACAGC,UCAGAG,UCAUCA,UCAUCC,UCGACA,UCUCCA,UCUUCA,UCUUCC,UUCAAC,UUCAUC,UUCUCC AACGAC,AACGAU,AACUUU,ACAUCA,ACAUCG,ACAUUC,ACCACC,ACGACG,ACGACU,ACGAUC,ACGAUU,ACUACA,ACUACG,ACUUCA,ACUUCG,ACUUCU,ACUUUA,AGAGAU,AUCAAC,AUCAUC,AUCGAC,AUCGAU,AUCGCU,AUCGUU,AUCUUC,AUUCAU,CAACGA,CACAAC,CACAUC,CACCAC,CACUAC,CACUUC,CAGAGA,CAUCAA,CAUCAC,CAUCAU,CAUCGA,CAUCGC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CGAUCG,CGCUUC,CUACAA,CUACAC,CUACAG,CUACGA,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUCAC,CUUCAG,CUUCAU,CUUCGA,CUUCUU,CUUUAU,GACUUC,GAGAUU,GAUCAA,GAUCGA,GCUUCA,GUCAAC,UACAAA,UACAAC,UACAAU,UACAGC,UACAUC,UACGAC,UACGAU,UACUUC,UAUCAA,UCAACG,UCACAA,UCAGAG,UCAUCA,UCAUCC,UCAUCG,UCAUCU,UCGACA,UCGACU,UCGAUA,UCGAUC,UCGAUU,UCGCUU,UCGUCC,UCGUUC,UCUCCA,UCUUCA,UCUUCC,UCUUCG,UGUCAA,UUACGA,UUCAAC,UUCAUC,UUCGAC,UUCGAU,UUCUCC,UUCUUC
AGO1 1 548 0.001955034 0.0007956130 1.297055 AGGUAG AGGUAG,GAGGUA,GGUAGU,GUAGUA,UGAGGU
IGF2BP1 2 831 0.002932551 0.0012057377 1.282240 AAGCAC,AGCACC AAGCAC,ACCCGU,AGCACC,CACCCG,CCCGUU,GCACCC
QKI 8 2805 0.008797654 0.0040664663 1.113343 ACUUAU,CACACU,CUAAUC,UAAUCA,UCAUAU,UCUAAU AAUCAU,ACACAC,ACACUA,ACUAAC,ACUAAU,ACUCAU,ACUUAU,AUCAUA,AUCUAA,AUCUAC,AUUAAC,CACACU,CACUAA,CUAACA,CUAACC,CUAACG,CUAAUC,CUACUC,CUCAUA,UAACCU,UAAUCA,UACUCA,UCAUAU,UCUAAU,UCUACU
ACO1 3 1283 0.003910068 0.0018607779 1.071288 CAGUGG,CAGUGU CAGUGA,CAGUGC,CAGUGG,CAGUGU
HNRNPLL 10 3534 0.010752688 0.0051229360 1.069655 ACACCA,CACACC,CACCAC,CACUGC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
TARDBP 7 2654 0.007820137 0.0038476365 1.023221 GAAUGU,GUGUGU,GUUUUG,UGAAUG,UGUGUG,UUGUUC GAAUGA,GAAUGG,GAAUGU,GUGAAU,GUGUGU,GUUGUG,GUUGUU,GUUUUG,UGAAUG,UGUGUG,UUGUGC,UUGUUC,UUUUGC

RBP on BSJ (Exon Only)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
KHSRP 1 35 0.09090909 0.002357873 5.268867 AGCUUC ACCCUC,AGCCUC,AUAUUU,AUGUAU,AUGUGU,CAGCCU,CAGCUU,CCCCCU,CCCCUC,CCCCUU,CCCUCC,CGGCUU,CUCCCU,CUGCCU,CUGCUU,GCCCUC,GCCUCC,GCCUUC,GGCCUC,UAGGUU,UAUAUU,UAUUUU,UCCCUC,UGCAUG,UGUAUA,UGUGUG,UUAUUA
SRSF3 1 61 0.09090909 0.004060781 4.484596 GCUUCA AACGAU,ACCACC,ACUACG,AGAGAU,CACAAC,CACAUC,CACCAC,CAGAGA,CAUCAC,CAUCGU,CAUUCA,CCACCA,CCUCGU,CCUCUU,CUACAG,CUCCAA,CUCGUC,CUCUUC,CUUCAA,CUUUAU,GACUUC,GAGAUU,UACAGC,UCAGAG,UCUCCA,UCUUCA,UCUUCC,UGUCAA,UUCGAC,UUCUCC,UUCUUC

RBP on BSJ (Exon and Intron)

Plot

Spreadsheet

id foreground background foregroundNorm backgroundNorm log2FC motifF motifB
RBMY1A1 2 95 0.007142857 0.0004836759 3.884389 ACAAGA,CAAGAC ACAAGA,CAAGAC
RBM42 2 103 0.007142857 0.0005239823 3.768911 AACUAC AACUAA,AACUAC,ACUAAG,ACUACG
CPEB4 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
DDX19B 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
EIF4A3 13 691 0.033333333 0.0034864974 3.257115 UUUUUU UUUUUU
IGHMBP2 6 350 0.016666667 0.0017684401 3.236416 AAAAAA AAAAAA
U2AF2 20 1071 0.050000000 0.0054010480 3.210617 UUUUCC,UUUUUC,UUUUUU UUUUCC,UUUUUC,UUUUUU
SYNCRIP 19 1041 0.047619048 0.0052498992 3.181177 AAAAAA,UUUUUU AAAAAA,UUUUUU
RALY 20 1117 0.050000000 0.0056328094 3.150002 UUUUUC,UUUUUG,UUUUUU UUUUUC,UUUUUG,UUUUUU
HNRNPCL1 24 1381 0.059523810 0.0069629182 3.095703 AUUUUU,CUUUUU,UUUUUG,UUUUUU AUUUUU,CUUUUU,UUUUUG,UUUUUU
HNRNPU 19 1136 0.047619048 0.0057285369 3.055300 AAAAAA,UUUUUU AAAAAA,CCCCCC,GGGGGG,UUUUUU
CPEB2 24 1487 0.059523810 0.0074969770 2.989086 AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU AUUUUU,CAUUUU,CCUUUU,CUUUUU,UUUUUU
HNRNPC 31 2006 0.076190476 0.0101118501 2.913564 AUUUUU,CUUUUU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUU,CUUUUU,GCAUAC,GGAUAC,GGAUAU,GGAUUC,GGGGGG,GGGUAC,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PABPC4 6 462 0.016666667 0.0023327287 2.836875 AAAAAA AAAAAA,AAAAAG
KHDRBS2 14 1051 0.035714286 0.0053002821 2.752360 GAUAAA,UUUUUU AAUAAA,AUAAAA,AUAAAC,GAUAAA,UUUUUU
FUS 21 1711 0.052380952 0.0086255542 2.602353 AAAAAA,GGGUGA,UGGUGA,UUUUUU AAAAAA,CGGUGA,CGGUGG,GGGGGG,GGGUGA,GGGUGC,GGGUGG,GGGUGU,UGGUGA,UGGUGG,UGGUGU,UUUUUU
SART3 8 777 0.021428571 0.0039197904 2.450687 AAAAAA,AGAAAA,GAAAAC AAAAAA,AAAAAC,AGAAAA,GAAAAA,GAAAAC
AGO2 6 677 0.016666667 0.0034159613 2.286602 AAAAAA AAAAAA,AAAGUG,AAGUGC,AGUGCU,GUGCUU,UAAAGU
KHDRBS1 19 1945 0.047619048 0.0098045143 2.280021 AUUUAA,CAAAAU,GAAAAC,UAAAAA,UUAAAA,UUUUAC,UUUUUU AUAAAA,AUUUAA,AUUUAC,CAAAAU,CUAAAA,CUAAAU,GAAAAC,UAAAAA,UAAAAC,UAAAAG,UUAAAA,UUAAAU,UUUUAC,UUUUUU
ELAVL4 28 2916 0.069047619 0.0146966949 2.232100 AAAAAA,UAUUUU,UUAUUU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU AAAAAA,AUCUAA,AUUUAU,GUAUCU,UAUCUA,UAUUUA,UAUUUU,UCUAAU,UGUAUC,UUAUUU,UUGUAU,UUUAUU,UUUGUA,UUUUAU,UUUUUA,UUUUUU
NOVA1 13 1428 0.033333333 0.0071997179 2.210953 UUUUUU AACACC,ACCACC,AGCACC,AGUCAC,AUCAAC,AUCACC,AUCAUC,AUUCAU,CAGUCA,CAUUCA,CCCCCC,GGGGGG,UCAGUC,UCAUUC,UUCAUU,UUUUUU
NOVA2 13 1434 0.033333333 0.0072299476 2.204908 UUUUUU AACACC,ACCACC,AGACAU,AGAUCA,AGCACC,AGGCAU,AGUCAU,AUCAAC,AUCACC,AUCAUC,CCUAGA,CUAGAU,GAGACA,GAGGCA,GAGUCA,GAUCAC,GGGGGG,UAGAUC,UUUUUU
ELAVL3 17 1928 0.042857143 0.0097188634 2.140676 UAUUUU,UUAUUU,UUUAUU,UUUUUU AUUUAU,AUUUUA,UAUUUA,UAUUUU,UUAUUU,UUUAUU,UUUUUU
TIA1 46 5140 0.111904762 0.0259018541 2.111144 AUUUUU,CCUUUC,CUCCUU,CUUUUU,GUUUUA,UAUUUU,UCCUUU,UUAUUU,UUUAUU,UUUUAU,UUUUCU,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AUUUUC,AUUUUG,AUUUUU,CCUUUC,CUCCUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUA,GUUUUC,GUUUUG,GUUUUU,UAUUUU,UCCUUU,UCUCCU,UUAUUU,UUCUCC,UUUAUU,UUUUAU,UUUUCG,UUUUCU,UUUUGG,UUUUGU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
KHDRBS3 14 1646 0.035714286 0.0082980653 2.105654 GAUAAA,UUUUUU AAAUAA,AAUAAA,AGAUAA,AUAAAA,AUAAAC,AUAAAG,AUUAAA,GAUAAA,UAAAAC,UAAAUA,UUAAAC,UUUUUU
EIF4B 1 226 0.004761905 0.0011436921 2.057840 UUGGAA CUCGGA,CUUGGA,GUCGGA,GUUGGA,UCGGAA,UCGGAC,UUGGAA,UUGGAC
TUT1 1 230 0.004761905 0.0011638452 2.032640 AAAUAC AAAUAC,AAUACU,AGAUAC,CAAUAC,CGAUAC,GAUACU
TIAL1 44 5597 0.107142857 0.0282043531 1.925546 AAAUUU,AAUUUU,AUUUUU,CUUUUU,UAUUUU,UUAUUU,UUUAAA,UUUAUU,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAAUUU,AAUUUU,AGUUUU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAGUUU,CUUUUA,CUUUUC,CUUUUG,CUUUUU,GUUUUC,GUUUUU,UAAAUU,UAUUUU,UCAGUU,UUAAAU,UUAUUU,UUCAGU,UUUAAA,UUUAUU,UUUCAG,UUUUAA,UUUUAU,UUUUCA,UUUUUA,UUUUUC,UUUUUG,UUUUUU
RC3H1 4 631 0.011904762 0.0031841999 1.902536 CCUUCU,CUUCUG,UCCCUU,UUCUGU CCCUUC,CCUUCU,CUUCUG,UCCCUU,UCUGUG,UUCUGU
ELAVL1 25 3309 0.061904762 0.0166767432 1.892213 UAUUUU,UGAUUU,UUAUUU,UUGAUU,UUGUUU,UUUAUU,UUUGUU,UUUUUG,UUUUUU AUUUAU,CCCCCC,UAGUUU,UAUUUA,UAUUUU,UGAUUU,UGGUUU,UGUUUU,UUAGUU,UUAUUU,UUGAUU,UUGGUU,UUGUUU,UUUAGU,UUUAUU,UUUGGU,UUUGUU,UUUUUG,UUUUUU
DAZAP1 21 2878 0.052380952 0.0145052398 1.852468 AAAAAA,AGGAAA,UAGGAA,UUUUUU AAAAAA,AAUUUA,AGAUAU,AGGAAA,AGGAAG,AGGAUA,AGGAUG,AGGUAA,AGGUAG,AGGUUA,AGGUUG,AGUAAA,AGUAAG,AGUAGG,AGUAUA,AGUAUG,AGUUAA,AGUUAG,AGUUUA,AGUUUG,GGGGGG,GUAACG,UAGGAA,UAGGAU,UAGGUA,UAGGUU,UAGUAA,UAGUAU,UAGUUA,UAGUUU,UUUUUU
SAMD4A 5 790 0.014285714 0.0039852882 1.841817 CUGGAA,CUGGUC,GCUGGA,GCUGGC,GCUGGU CGGGAA,CGGGAC,CGGGCA,CGGGCC,CGGGUA,CGGGUC,CUGGAA,CUGGAC,CUGGCA,CUGGCC,CUGGUA,CUGGUC,GCGGGA,GCGGGC,GCGGGU,GCUGGA,GCUGGC,GCUGGU
PABPC1 9 1321 0.023809524 0.0066606207 1.837810 AAAAAA,ACUAAU,AGAAAA,GAAAAC AAAAAA,AAAAAC,ACAAAC,ACAAAU,ACGAAC,ACGAAU,ACUAAC,ACUAAU,AGAAAA,CAAACA,CAAACC,CAAAUA,CAAAUC,CGAACA,CGAACC,CGAAUA,CGAAUC,CUAACA,CUAACC,CUAAUA,CUAAUC,GAAAAA,GAAAAC
HNRNPK 22 3244 0.054761905 0.0163492543 1.743948 AAAAAA,ACCCCA,ACCCUU,UCCCUU,UUUUUU AAAAAA,ACCCAA,ACCCAU,ACCCCA,ACCCCC,ACCCGA,ACCCGC,ACCCGU,ACCCUU,CAAACC,CAACCC,CAUACC,CAUCCC,CCAAAC,CCAACC,CCAUAC,CCAUCC,CCCCAA,CCCCAC,CCCCAU,CCCCCA,CCCCCC,CCCCCU,CCCCUA,CCCCUU,GCCCAA,GCCCAC,GCCCAG,GCCCCC,GCCCCU,GGGGGG,UCCCAA,UCCCAC,UCCCAU,UCCCCA,UCCCCC,UCCCCU,UCCCGA,UCCCUA,UCCCUU,UUUUUU
FXR2 4 730 0.011904762 0.0036829907 1.692589 GACAAG,GACGAG,UGACAA,UGACGA AGACAA,AGACAG,AGACGA,AGACGG,GACAAA,GACAAG,GACAGA,GACAGG,GACGAA,GACGAG,GACGGA,GACGGG,GGACAA,GGACAG,GGACGA,GGACGG,UGACAA,UGACAG,UGACGA,UGACGG
HNRNPD 9 1488 0.023809524 0.0075020153 1.666189 AAAAAA,UUAGAG,UUAUUU,UUUAUU AAAAAA,AAUUUA,AGAUAU,AGUAGG,AUUUAU,UAUUUA,UUAGAG,UUAGGA,UUAGGG,UUAUUU,UUUAUU
A1CF 3 598 0.009523810 0.0030179363 1.657976 AUCAGU,UAAUUG,UCAGUA AGUAUA,AUAAUU,AUCAGU,CAGUAU,GAUCAG,UAAUUA,UAAUUG,UCAGUA,UGAUCA,UUAAUU
PABPC3 1 310 0.004761905 0.0015669085 1.603618 GAAAAC AAAAAC,AAAACA,AAAACC,GAAAAC
PPIE 55 9262 0.133333333 0.0466696896 1.514480 AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUUA,AAAUUU,AAUAAU,AAUUUU,AUAAAU,AUAAUA,AUUUAA,AUUUUU,UAAAAA,UAAUAA,UAUUUU,UUAAAA,UUAAUA,UUAUUU,UUUAAA,UUUAUU,UUUUAU,UUUUUA,UUUUUU AAAAAA,AAAAAU,AAAAUA,AAAAUU,AAAUAA,AAAUAU,AAAUUA,AAAUUU,AAUAAA,AAUAAU,AAUAUA,AAUAUU,AAUUAA,AAUUAU,AAUUUA,AAUUUU,AUAAAA,AUAAAU,AUAAUA,AUAAUU,AUAUAA,AUAUAU,AUAUUA,AUAUUU,AUUAAA,AUUAAU,AUUAUA,AUUAUU,AUUUAA,AUUUAU,AUUUUA,AUUUUU,UAAAAA,UAAAAU,UAAAUA,UAAAUU,UAAUAA,UAAUAU,UAAUUA,UAAUUU,UAUAAA,UAUAAU,UAUAUA,UAUAUU,UAUUAA,UAUUAU,UAUUUA,UAUUUU,UUAAAA,UUAAAU,UUAAUA,UUAAUU,UUAUAA,UUAUAU,UUAUUA,UUAUUU,UUUAAA,UUUAAU,UUUAUA,UUUAUU,UUUUAA,UUUUAU,UUUUUA,UUUUUU
PCBP1 28 4891 0.069047619 0.0246473196 1.486161 AAAAAA,AAAUUA,AAUUAC,ACCAAA,CACCCU,CCAUUA,CCUUUC,CUUUCC,UUAGAG,UUUUUU AAAAAA,AAACCA,AAAUUA,AAAUUC,AACCAA,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUC,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAACC,CAACCC,CAAUCC,CAAUUA,CACCCU,CAUACC,CAUCCC,CAUUAA,CAUUCC,CCAAAC,CCAACC,CCAAUC,CCACCC,CCAUAC,CCAUCC,CCAUUA,CCAUUC,CCCACC,CCCCAA,CCCCAC,CCCCCC,CCCUCC,CCCUCU,CCCUUA,CCCUUC,CCUAAC,CCUACC,CCUAUC,CCUCCC,CCUCUU,CCUUAA,CCUUAC,CCUUCC,CCUUUC,CUAACC,CUACCC,CUAUCC,CUUAAA,CUUACC,CUUCCC,CUUUCC,GGGGGG,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
ELAVL2 57 9826 0.138095238 0.0495112858 1.479834 AAUUUG,AAUUUU,AUUUAA,AUUUUU,CAUUUU,CUUUUU,GAUUUA,GAUUUU,GUUUUA,UAUGUU,UAUUUG,UAUUUU,UCAUUU,UGAUUU,UGUAUU,UUAUUU,UUGAUU,UUUACU,UUUAUG,UUUAUU,UUUGAU,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU AAUUUA,AAUUUG,AAUUUU,AUACUU,AUAUUU,AUUAUU,AUUUAA,AUUUAC,AUUUAG,AUUUAU,AUUUUA,AUUUUC,AUUUUG,AUUUUU,CAUUUU,CUUAUA,CUUUAA,CUUUCU,CUUUUA,CUUUUU,GAUUUA,GAUUUU,GUAUUG,GUUUUA,GUUUUC,GUUUUU,UAAGUU,UAAUUU,UACUUU,UAGUUA,UAUACU,UAUAUA,UAUAUU,UAUGUU,UAUUAU,UAUUGA,UAUUGU,UAUUUA,UAUUUG,UAUUUU,UCAUUU,UCUUAU,UCUUUU,UGAUUU,UGUAUU,UUAAGU,UUAAUU,UUACUU,UUAGUU,UUAUAC,UUAUAU,UUAUGU,UUAUUG,UUAUUU,UUCAUU,UUCUUU,UUGAUU,UUGUAU,UUUAAG,UUUAAU,UUUACU,UUUAGU,UUUAUA,UUUAUG,UUUAUU,UUUCAU,UUUCUU,UUUGAU,UUUUAA,UUUUAG,UUUUAU,UUUUUA,UUUUUC,UUUUUG,UUUUUU
PTBP1 45 8003 0.109523810 0.0403264813 1.441445 ACUUUU,AUUUUU,CCUUUC,CCUUUU,CUCUUG,CUUUCC,CUUUUU,UAGCUG,UAUUUU,UCUCUC,UUAUUU,UUCCUU,UUCUCU,UUUCCC,UUUUCC,UUUUCU,UUUUUC,UUUUUU ACUUUC,ACUUUU,AGCUGU,AUCUUC,AUUUUC,AUUUUU,CAUCUU,CCAUCU,CCCCCC,CCUCUU,CCUUCC,CCUUUC,CCUUUU,CUAUCU,CUCCAU,CUCCCC,CUCUCU,CUCUUA,CUCUUC,CUCUUG,CUCUUU,CUUCCU,CUUCUC,CUUCUU,CUUUCC,CUUUCU,CUUUUC,CUUUUU,GCUCCC,GCUGUG,GGCUCC,GGGGGG,GUCUUA,GUCUUU,UACUUU,UAGCUG,UAUUUU,UCCAUC,UCCCCC,UCCUCU,UCUAUC,UCUCUC,UCUCUU,UCUUCU,UCUUUC,UCUUUU,UUACUU,UUAUUU,UUCCCC,UUCCUU,UUCUCU,UUCUUC,UUCUUG,UUCUUU,UUUCCC,UUUCUU,UUUUCC,UUUUCU,UUUUUC,UUUUUU
RBM3 2 541 0.007142857 0.0027307537 1.387202 AAAACU,AAGACU AAAACG,AAAACU,AAACGA,AAACUA,AAGACG,AAGACU,AAUACG,AAUACU,AGACGA,AGACUA,AUACGA,AUACUA,GAAACG,GAAACU,GAGACG,GAGACU,GAUACG,GAUACU
HNRNPLL 3 748 0.009523810 0.0037736800 1.335567 ACACCA,CACACC,GCACAC ACAAAC,ACACAC,ACACCA,ACAUAC,ACCACA,ACCGCA,ACGACA,ACUGCA,AGACGA,CAAACA,CACACA,CACACC,CACCAC,CACCGC,CACUGC,CAGACG,CAUACA,GACGAC,GCAAAC,GCACAC,GCAUAC
FMR1 27 5430 0.066666667 0.0273629585 1.284741 AAAAAA,AGCUGG,CAGCUG,GACAAG,GGCUGA,GGCUGG,UGACAA,UGGCUG,UUUUUU AAAAAA,AAGCGG,AAGGAA,AAGGAG,AAGGAU,AAGGGA,ACUAAG,ACUGGG,ACUGGU,AGCAGC,AGCGAA,AGCGAC,AGCGGC,AGCUGG,AGGAAG,AGGAAU,AGGAGG,AGGAGU,AGGAUG,AGGAUU,AGGCAC,AGGGAG,AGUGGC,AUAGGC,AUGGAG,CAGCUG,CAUAGG,CGAAGG,CGACUG,CGGCUG,CUAAGG,CUAUGG,CUGAGG,CUGGGC,CUGGUG,GAAGGA,GAAGGG,GACAAG,GACAGG,GACUAA,GACUGG,GAGCGA,GAGCGG,GAGGAU,GCAGCU,GCAUAG,GCGAAG,GCGACU,GCGGCU,GCUAAG,GCUAUG,GCUGAG,GCUGGG,GGACAA,GGACAG,GGACUA,GGCAUA,GGCGAA,GGCUAA,GGCUAU,GGCUGA,GGCUGG,GGGCAU,GGGCGA,GGGCUA,GGGCUG,GGGGGG,GUGCGA,GUGCGG,GUGGCU,UAAGGA,UAGCAG,UAGCGA,UAGCGG,UAGGCA,UAGUGG,UAUGGA,UGACAA,UGACAG,UGAGGA,UGCGAC,UGCGGC,UGGAGU,UGGCUG,UUUUUU
PABPC5 2 596 0.007142857 0.0030078597 1.247764 AGAAAA,GAAAAU AGAAAA,AGAAAG,AGAAAU,GAAAAU,GAAAGU,GAAAUU
PCBP2 19 4164 0.047619048 0.0209844821 1.182216 AAAUUA,AAUUAC,ACCAAA,CCAUUA,CCUCCU,UUAGAG,UUUUUU AAACCA,AAAUUA,AAAUUC,AACCAA,AACCCU,AAUUAA,AAUUAC,AAUUCA,AAUUCC,ACAUUA,ACCAAA,ACCCUA,ACCUUA,AUUAAA,AUUACC,AUUCAC,AUUCCA,AUUCCC,CAAUUA,CAUUAA,CCAUUA,CCAUUC,CCCCCA,CCCCCC,CCCCCU,CCCUAA,CCCUCC,CCCUUA,CCCUUC,CCUCCA,CCUCCC,CCUCCU,CCUUAA,CCUUCC,CUAACC,CUCCCA,CUCCCC,CUCCCU,CUUAAA,CUUCCA,CUUCCC,CUUCCU,GGGGGG,UAACCC,UCCCCA,UUAGAG,UUAGGA,UUAGGG,UUUUUU
HNRNPA1 28 6340 0.069047619 0.0319478033 1.111875 AAAAAA,AUAGAA,AUUUAA,GUUAGG,UAGAGU,UAGGAA,UAGGCU,UUAUUU,UUUAGA,UUUAUU,UUUUUU AAAAAA,AAAGAG,AAGAGG,AAGGAG,AAGGUG,AAGUAC,AAUUUA,ACUAGA,AGACUA,AGAGGA,AGAUAU,AGAUUA,AGGAAG,AGGAGC,AGGGAC,AGGGCA,AGGGUU,AGUACG,AGUAGG,AGUGAA,AGUGGU,AGUUAG,AUAGAA,AUAGCA,AUAGGG,AUUAGA,AUUUAA,AUUUAU,CAAAGA,CAAGGA,CAGGGA,CCAAGG,CCCCCC,CGUAGG,CUAGAC,GAAGGU,GACUAG,GACUUA,GAGGAA,GAGGAG,GAGUGG,GAUUAG,GCAGGC,GCCAAG,GGAAGG,GGACUU,GGAGCC,GGAGGA,GGCAGG,GGGACU,GGGCAG,GGGUUA,GGUGCG,GGUUAG,GUAAGU,GUACGC,GUAGGG,GUAGGU,GUGGUG,GUUAGG,GUUUAG,UAAGUA,UACGGC,UAGACA,UAGACU,UAGAGA,UAGAGU,UAGAUU,UAGGAA,UAGGAU,UAGGCA,UAGGCU,UAGGGA,UAGGGC,UAGGGU,UAGGUA,UAGGUC,UAGUGA,UAGUUA,UCGGGC,UGGUGC,UUAGAU,UUAGGG,UUAUUU,UUUAGA,UUUAUA,UUUAUU,UUUUUU
ZCRB1 2 666 0.007142857 0.0033605401 1.087808 AUUUAA,GAUUUA AAUUAA,ACUUAA,AUUUAA,GAAUUA,GACUUA,GAUUAA,GAUUUA,GCUUAA,GGAUUA,GGCUUA,GGUUUA,GUUUAA

Help

  • Note:
    • foreground: number of motifs found in the foreground target sequences (e.g. predicted circRNAs).
    • background: number of motifs found in the background target sequences (e.g. randomly generated circRNAs).
    • foregroundNorm: number of motifs found in the foreground target sequences (+1) divided by the number (or length) of sequences analyzed.
    • backgroundNorm: number of motifs found in background target sequences (+1) divided by the number (or length) of sequences analyzed.
    • log2FC: log2 fold change calculated in this way (foregroundNorm)/(backgroundNorm).
    • motifF: motifs of the corresponding RBP found in the foreground sequences.
    • motifB: motifs of the corresponding RBP found in the background sequences.

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